Wall clock time and date at job start Tue Mar 31 2020 11:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47443 * 2 1 4 4 H 1.09004 * 109.46618 * 55.00107 * 3 2 1 5 5 C 1.50692 * 109.47044 * 174.99892 * 3 2 1 6 6 H 1.07997 * 119.99846 * 120.00393 * 5 3 2 7 7 C 1.37879 * 120.00567 * 299.99977 * 5 3 2 8 8 N 1.31516 * 119.99678 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00415 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47129 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46934 * 119.99982 * 9 7 5 12 12 H 1.48497 * 109.47463 * 240.00384 * 9 7 5 13 13 N 1.46495 * 109.47204 * 295.00550 * 3 2 1 14 14 C 1.34771 * 120.00526 * 84.99728 * 13 3 2 15 15 O 1.21282 * 119.99702 * 5.43038 * 14 13 3 16 16 C 1.50700 * 120.00368 * 185.43435 * 14 13 3 17 17 C 1.50699 * 110.88467 * 58.87913 * 16 14 13 18 18 C 1.38234 * 119.99978 * 249.73041 * 17 16 14 19 19 C 1.38237 * 119.99826 * 179.77161 * 18 17 16 20 20 C 1.38234 * 119.99918 * 0.48213 * 19 18 17 21 21 C 1.38236 * 119.99901 * 359.79415 * 20 19 18 22 22 C 1.38231 * 120.00063 * 359.95393 * 21 20 19 23 23 C 1.54476 * 110.96523 * 295.07120 * 16 14 13 24 24 N 1.46764 * 105.47592 * 267.29432 * 23 16 14 25 25 C 1.34415 * 111.29995 * 342.98779 * 24 23 16 26 26 O 1.21281 * 124.94205 * 180.43769 * 25 24 23 27 27 C 1.51286 * 110.11568 * 0.40306 * 25 24 23 28 28 H 1.09004 * 109.46979 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46690 * 299.99668 * 1 2 3 30 30 H 1.08993 * 109.46998 * 59.99756 * 1 2 3 31 31 H 1.09008 * 109.47126 * 240.00139 * 2 1 3 32 32 H 1.09000 * 109.47200 * 120.00907 * 2 1 3 33 33 H 0.96999 * 120.00221 * 179.97438 * 8 7 5 34 34 H 0.97007 * 119.99799 * 264.99964 * 13 3 2 35 35 H 1.08003 * 120.00005 * 0.02562 * 18 17 16 36 36 H 1.07999 * 119.99856 * 180.25642 * 19 18 17 37 37 H 1.07997 * 120.00059 * 179.76930 * 20 19 18 38 38 H 1.08008 * 119.99844 * 179.97438 * 21 20 19 39 39 H 1.08000 * 119.99985 * 179.97438 * 22 21 20 40 40 H 1.09008 * 110.24897 * 148.29719 * 23 16 14 41 41 H 1.09003 * 110.32120 * 26.33782 * 23 16 14 42 42 H 0.96998 * 124.35201 * 163.00219 * 24 23 16 43 43 H 1.08999 * 110.48290 * 134.93336 * 27 25 24 44 44 H 1.08994 * 110.48937 * 257.57537 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1472 1.8887 -0.6522 7 6 4.1433 0.8782 1.2280 8 7 3.4063 0.3365 2.1729 9 14 6.0050 0.8797 1.3811 10 1 6.5989 1.5449 0.1936 11 1 6.4001 1.6154 2.6091 12 1 6.4962 -0.5193 1.4626 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6645 -1.3668 15 8 -0.3014 2.7196 -0.4050 16 6 -0.0106 3.2298 -2.6908 17 6 -0.0046 2.1662 -3.7584 18 6 0.9308 2.2127 -4.7751 19 6 0.9392 1.2345 -5.7518 20 6 0.0059 0.2154 -5.7174 21 6 -0.9331 0.1721 -4.7038 22 6 -0.9383 1.1474 -3.7243 23 6 0.8682 4.4316 -3.1027 24 7 0.1726 5.6187 -2.5920 25 6 -1.1079 5.3423 -2.2905 26 8 -1.9082 6.1441 -1.8574 27 6 -1.4057 3.8858 -2.5708 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5140 0.8899 33 1 3.8293 -0.0620 2.9495 34 1 2.2720 2.1231 -1.9978 35 1 1.6576 3.0110 -4.8041 36 1 1.6727 1.2686 -6.5438 37 1 0.0101 -0.5468 -6.4825 38 1 -1.6626 -0.6239 -4.6772 39 1 -1.6722 1.1138 -2.9326 40 1 0.9533 4.4822 -4.1882 41 1 1.8568 4.3501 -2.6508 42 1 0.5838 6.4907 -2.4858 43 1 -1.9648 3.4451 -1.7455 44 1 -1.9575 3.7821 -3.5050 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597507779.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:08 Heat of formation + Delta-G solvation = -48.692454 kcal Electronic energy + Delta-G solvation = -27575.260680 eV Core-core repulsion = 23878.115064 eV Total energy + Delta-G solvation = -3697.145616 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.23931 -39.01481 -38.53966 -36.25416 -35.11037 -32.98988 -32.34091 -31.16557 -30.83708 -29.47961 -27.70459 -26.81461 -24.14922 -23.04450 -22.53691 -21.79665 -20.38693 -19.85813 -19.24696 -17.87211 -17.60394 -16.41778 -16.03922 -15.56615 -15.43944 -15.11567 -14.89206 -14.51704 -14.49373 -14.30873 -13.71728 -13.60922 -13.20551 -13.08545 -12.93438 -12.71603 -12.58276 -12.17868 -11.79664 -11.71936 -11.50213 -11.29901 -11.13250 -11.00031 -10.91964 -10.87259 -10.35317 -10.24024 -9.89359 -9.70172 -9.44057 -9.13323 -9.07817 -8.96433 -8.65999 -8.53868 -7.90789 -6.16887 -4.26452 1.22955 1.33991 2.66498 3.13927 3.20143 3.28187 3.29975 3.32863 3.63808 3.87276 4.20119 4.31254 4.32608 4.57260 4.85489 4.91521 5.00316 5.11212 5.14482 5.18317 5.35753 5.38603 5.42276 5.53287 5.70851 5.86456 5.90964 5.96560 6.32984 6.37300 6.38757 6.44588 6.47717 6.58940 6.75293 6.89746 6.97720 6.97985 7.12860 7.29612 7.36146 7.56224 7.66186 7.84309 8.12788 8.27020 8.56258 8.71127 9.00547 9.40784 10.88477 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.011662 B = 0.004986 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.420655 B = 5614.334942 C = 6520.607698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.126 4.126 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.698 5.698 14 C 0.521 3.479 15 O -0.536 6.536 16 C -0.057 4.057 17 C -0.063 4.063 18 C -0.117 4.117 19 C -0.116 4.116 20 C -0.120 4.120 21 C -0.114 4.114 22 C -0.100 4.100 23 C 0.110 3.890 24 N -0.731 5.731 25 C 0.530 3.470 26 O -0.535 6.535 27 C -0.135 4.135 28 H 0.024 0.976 29 H 0.049 0.951 30 H 0.037 0.963 31 H 0.031 0.969 32 H 0.099 0.901 33 H 0.264 0.736 34 H 0.388 0.612 35 H 0.128 0.872 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.411 0.589 43 H 0.123 0.877 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.189 1.762 -16.936 17.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.165 4.165 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.345 5.345 14 C 0.304 3.696 15 O -0.414 6.414 16 C -0.061 4.061 17 C -0.064 4.064 18 C -0.135 4.135 19 C -0.134 4.134 20 C -0.138 4.138 21 C -0.132 4.132 22 C -0.118 4.118 23 C -0.015 4.015 24 N -0.387 5.387 25 C 0.316 3.684 26 O -0.411 6.411 27 C -0.175 4.175 28 H 0.044 0.956 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.118 0.882 33 H 0.074 0.926 34 H 0.220 0.780 35 H 0.145 0.855 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.250 0.750 43 H 0.141 0.859 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.162 1.979 -15.804 16.743 hybrid contribution 1.670 0.139 -0.197 1.688 sum -3.492 2.119 -16.001 16.514 Atomic orbital electron populations 1.21833 0.98530 0.98278 1.00978 1.21919 0.92494 0.99740 1.02345 1.18822 0.94333 0.89127 0.80816 0.93163 1.21227 0.90618 1.39088 1.06271 0.92089 1.24877 0.98568 0.94790 0.95378 1.69897 1.35060 1.37533 1.09351 0.86420 0.84903 0.77808 0.78126 1.19761 1.20885 1.20850 1.46395 1.14151 1.55307 1.18621 1.19559 0.83143 0.78971 0.87922 1.90699 1.54058 1.58060 1.38598 1.20667 0.96959 0.93981 0.94528 1.19195 0.96897 0.95657 0.94652 1.21089 0.98476 0.99428 0.94496 1.21090 0.98790 0.94656 0.98827 1.21168 0.95520 0.98453 0.98624 1.21125 0.99002 0.98466 0.94605 1.21021 0.98450 0.93821 0.98532 1.22297 0.96320 0.83126 0.99806 1.46144 1.12476 1.13035 1.67002 1.20765 0.81768 0.90290 0.75532 1.90733 1.50813 1.54194 1.45370 1.22376 0.96380 0.92902 1.05855 0.95650 0.93189 0.94408 0.94974 0.88241 0.92572 0.78004 0.85456 0.85929 0.86181 0.85950 0.85745 0.89487 0.89240 0.75001 0.85929 0.87323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.59 37.16 0.32 -2.64 16 2 C -0.13 -2.95 5.45 -26.73 -0.15 -3.09 16 3 C 0.27 6.48 2.25 -69.09 -0.16 6.33 16 4 H 0.05 1.42 7.51 -51.93 -0.39 1.03 16 5 C -0.53 -13.51 8.73 -34.44 -0.30 -13.82 16 6 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.14 11.29 55.43 0.63 -23.52 16 9 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 10 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 13 N -0.70 -13.36 4.75 -54.94 -0.26 -13.62 16 14 C 0.52 9.46 4.76 -10.99 -0.05 9.41 16 15 O -0.54 -11.85 13.10 5.56 0.07 -11.77 16 16 C -0.06 -0.76 0.63 -155.18 -0.10 -0.86 16 17 C -0.06 -0.75 4.54 -104.63 -0.47 -1.22 16 18 C -0.12 -1.16 8.90 -39.58 -0.35 -1.51 16 19 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 20 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 21 C -0.11 -1.20 10.05 -39.58 -0.40 -1.60 16 22 C -0.10 -1.21 9.14 -39.59 -0.36 -1.57 16 23 C 0.11 1.19 6.06 -3.12 -0.02 1.17 16 24 N -0.73 -9.02 6.24 -59.20 -0.37 -9.39 16 25 C 0.53 8.25 8.43 -10.86 -0.09 8.16 16 26 O -0.53 -10.29 18.03 5.56 0.10 -10.19 16 27 C -0.13 -1.85 5.27 -26.74 -0.14 -1.99 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 1.15 7.93 -51.93 -0.41 0.73 16 30 H 0.04 0.76 5.76 -51.93 -0.30 0.46 16 31 H 0.03 0.72 8.14 -51.92 -0.42 0.30 16 32 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16 33 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 34 H 0.39 6.51 8.38 -40.82 -0.34 6.17 16 35 H 0.13 0.99 6.01 -52.48 -0.32 0.67 16 36 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 38 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 39 H 0.12 1.55 7.95 -52.49 -0.42 1.14 16 40 H 0.09 0.70 6.05 -51.92 -0.31 0.38 16 41 H 0.09 0.96 7.63 -51.93 -0.40 0.57 16 42 H 0.41 4.30 8.96 -40.82 -0.37 3.94 16 43 H 0.12 1.92 6.97 -51.93 -0.36 1.56 16 44 H 0.11 1.22 7.86 -51.93 -0.41 0.81 16 LS Contribution 355.89 15.07 5.36 5.36 Total: -1.00 -32.15 355.89 -8.63 -40.79 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -5.99 Total: 11.87 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -3.16 Total: -4.59 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 0.00 Total: -46.53 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: 0.17 Total: -21.97 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.15 -8.63 -40.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597507779.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.907 kcal (2) G-P(sol) polarization free energy of solvation -32.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds