Wall clock time and date at job start Tue Mar 31 2020 11:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46892 * 2 1 4 4 H 1.08991 * 109.46960 * 304.99033 * 3 2 1 5 5 C 1.50709 * 109.47035 * 184.99656 * 3 2 1 6 6 H 1.07996 * 119.99635 * 239.99771 * 5 3 2 7 7 C 1.37878 * 119.99674 * 59.99585 * 5 3 2 8 8 N 1.31509 * 120.00243 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99646 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47391 * 90.00207 * 9 7 5 11 11 H 1.48497 * 109.47013 * 210.00401 * 9 7 5 12 12 H 1.48503 * 109.47376 * 329.99961 * 9 7 5 13 13 N 1.46502 * 109.47210 * 64.99735 * 3 2 1 14 14 C 1.34770 * 119.99937 * 274.99533 * 13 3 2 15 15 O 1.21286 * 120.00013 * 354.58983 * 14 13 3 16 16 C 1.50693 * 120.00265 * 174.57935 * 14 13 3 17 17 C 1.50707 * 110.85404 * 61.60411 * 16 14 13 18 18 C 1.38242 * 119.99699 * 185.00501 * 17 16 14 19 19 C 1.38234 * 119.99417 * 179.76477 * 18 17 16 20 20 C 1.38233 * 120.00022 * 0.49035 * 19 18 17 21 21 C 1.38234 * 120.00154 * 359.78438 * 20 19 18 22 22 C 1.38225 * 120.00080 * 5.27931 * 17 16 14 23 23 C 1.54482 * 110.97313 * 297.77447 * 16 14 13 24 24 N 1.46762 * 105.47231 * 267.29700 * 23 16 14 25 25 C 1.34416 * 111.29967 * 342.97755 * 24 23 16 26 26 O 1.21282 * 124.94156 * 180.44526 * 25 24 23 27 27 C 1.51277 * 110.11929 * 0.41263 * 25 24 23 28 28 H 1.08997 * 109.47733 * 300.00201 * 1 2 3 29 29 H 1.09002 * 109.46996 * 60.00341 * 1 2 3 30 30 H 1.09002 * 109.47370 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46997 * 119.99101 * 2 1 3 32 32 H 1.08997 * 109.47733 * 239.99799 * 2 1 3 33 33 H 0.96998 * 120.00088 * 180.02562 * 8 7 5 34 34 H 0.96995 * 120.00061 * 95.00450 * 13 3 2 35 35 H 1.07995 * 119.99859 * 359.97438 * 18 17 16 36 36 H 1.08001 * 119.99784 * 180.25150 * 19 18 17 37 37 H 1.08008 * 119.99861 * 179.76974 * 20 19 18 38 38 H 1.08003 * 120.00073 * 179.97438 * 21 20 19 39 39 H 1.08008 * 120.00118 * 359.97438 * 22 17 16 40 40 H 1.09007 * 110.23960 * 26.29349 * 23 16 14 41 41 H 1.09001 * 110.24741 * 148.28972 * 23 16 14 42 42 H 0.96997 * 124.35067 * 162.96461 * 24 23 16 43 43 H 1.09005 * 110.48529 * 257.57263 * 27 25 24 44 44 H 1.09001 * 110.48954 * 134.92592 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8890 0.6524 7 6 4.1433 0.8784 -1.2278 8 7 3.4063 0.3374 -2.1731 9 14 6.0050 0.8800 -1.3809 10 1 6.5539 -0.3520 -0.7595 11 1 6.3836 0.9214 -2.8162 12 1 6.5576 2.0720 -0.6887 13 7 1.6523 2.0976 1.2518 14 6 0.4350 2.6645 1.3668 15 8 -0.3018 2.7194 0.4050 16 6 -0.0108 3.2300 2.6906 17 6 0.8974 4.3501 3.1287 18 6 0.7233 4.9362 4.3685 19 6 1.5595 5.9603 4.7722 20 6 2.5632 6.4050 3.9322 21 6 2.7336 5.8226 2.6901 22 6 1.9008 4.7950 2.2885 23 6 -0.0855 2.1246 3.7671 24 7 -1.4712 1.6419 3.7371 25 6 -2.2778 2.5121 3.1054 26 8 -3.4708 2.3634 2.9460 27 6 -1.4811 3.7041 2.6229 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5137 0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 3.8294 -0.0611 -2.9497 34 1 2.2717 2.1233 1.9977 35 1 -0.0637 4.5918 5.0229 36 1 1.4261 6.4156 5.7425 37 1 3.2141 7.2076 4.2462 38 1 3.5175 6.1703 2.0336 39 1 2.0343 4.3397 1.3182 40 1 0.6016 1.3141 3.5237 41 1 0.1491 2.5372 4.7484 42 1 -1.7669 0.8027 4.1233 43 1 -1.6370 4.5589 3.2812 44 1 -1.7539 3.9558 1.5981 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597507780.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:12 Heat of formation + Delta-G solvation = -47.658970 kcal Electronic energy + Delta-G solvation = -27615.143999 eV Core-core repulsion = 23918.043198 eV Total energy + Delta-G solvation = -3697.100801 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.28620 -39.04209 -38.53017 -36.25246 -35.15060 -33.03920 -32.36512 -31.16880 -30.64683 -29.46932 -27.79064 -26.78236 -24.18652 -23.05308 -22.48916 -21.60929 -20.58021 -19.87057 -19.28694 -17.78164 -17.52436 -16.65028 -15.97048 -15.53711 -15.23477 -15.17331 -14.79377 -14.62191 -14.52440 -14.11900 -13.71970 -13.49713 -13.26032 -13.13489 -12.99083 -12.79101 -12.72917 -12.04454 -11.79582 -11.58745 -11.51664 -11.30635 -11.18449 -11.04851 -11.02718 -10.87181 -10.37269 -10.25899 -9.88859 -9.73980 -9.33008 -9.11444 -9.02657 -8.93221 -8.77717 -8.56789 -7.93725 -6.18115 -4.28042 1.22281 1.36640 2.66055 3.11056 3.20031 3.27698 3.28858 3.33004 3.67674 3.79272 4.26277 4.29638 4.46005 4.52129 4.83496 4.93735 4.99402 5.12528 5.16237 5.24688 5.36569 5.42624 5.43749 5.56880 5.71615 5.89994 5.96089 6.02955 6.30954 6.35492 6.38951 6.49945 6.54116 6.57184 6.74940 6.92873 6.94053 6.97549 7.11288 7.26538 7.32702 7.53641 7.64040 7.81486 8.10386 8.26392 8.52464 8.69329 8.97364 9.39429 10.87103 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.011939 B = 0.005388 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.641750 B = 5195.024601 C = 7028.880400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.052 0.948 5 C -0.534 4.534 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.703 5.703 14 C 0.519 3.481 15 O -0.534 6.534 16 C -0.056 4.056 17 C -0.070 4.070 18 C -0.113 4.113 19 C -0.121 4.121 20 C -0.119 4.119 21 C -0.111 4.111 22 C -0.105 4.105 23 C 0.115 3.885 24 N -0.731 5.731 25 C 0.529 3.471 26 O -0.534 6.534 27 C -0.136 4.136 28 H 0.034 0.966 29 H 0.050 0.950 30 H 0.024 0.976 31 H 0.031 0.969 32 H 0.100 0.900 33 H 0.265 0.735 34 H 0.390 0.610 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.125 0.875 39 H 0.139 0.861 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.411 0.589 43 H 0.109 0.891 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.525 7.731 14.939 16.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.070 0.930 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.351 5.351 14 C 0.303 3.697 15 O -0.411 6.411 16 C -0.060 4.060 17 C -0.071 4.071 18 C -0.131 4.131 19 C -0.139 4.139 20 C -0.137 4.137 21 C -0.129 4.129 22 C -0.123 4.123 23 C -0.010 4.010 24 N -0.387 5.387 25 C 0.315 3.685 26 O -0.411 6.411 27 C -0.176 4.176 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.044 0.956 31 H 0.050 0.950 32 H 0.119 0.881 33 H 0.075 0.925 34 H 0.222 0.778 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.143 0.857 39 H 0.157 0.843 40 H 0.108 0.892 41 H 0.102 0.898 42 H 0.250 0.750 43 H 0.127 0.873 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.623 7.665 13.884 16.074 hybrid contribution 1.368 -0.486 0.440 1.517 sum -1.254 7.178 14.324 16.071 Atomic orbital electron populations 1.21824 0.98456 0.98319 1.00989 1.21945 0.92410 0.99853 1.02409 1.18836 0.94372 0.89087 0.80856 0.93046 1.21189 0.90525 1.39256 1.06315 0.92021 1.24871 0.98532 0.94778 0.95364 1.69883 1.35161 1.37412 1.09342 0.86477 0.84930 0.78459 0.77416 1.20576 1.21097 1.19831 1.46570 1.14090 1.55628 1.18832 1.19592 0.82979 0.78844 0.88331 1.90705 1.53904 1.57731 1.38773 1.20699 0.95521 0.94457 0.95345 1.19227 0.96231 0.96693 0.94924 1.20907 0.99713 0.96892 0.95569 1.21054 0.95864 0.97300 0.99702 1.21197 0.98182 0.99898 0.94439 1.21209 0.99233 0.96121 0.96375 1.21529 0.93999 0.96430 1.00373 1.22219 0.83700 0.96821 0.98219 1.46158 1.09457 1.23633 1.59450 1.20789 0.86630 0.84739 0.76305 1.90736 1.14208 1.78242 1.57871 1.22421 0.91418 0.97405 1.06336 0.94650 0.93112 0.95646 0.95011 0.88142 0.92505 0.77752 0.86015 0.86094 0.86184 0.85688 0.84337 0.89242 0.89758 0.75026 0.87326 0.85856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.59 37.15 0.32 -2.68 16 2 C -0.13 -2.93 5.45 -26.73 -0.15 -3.08 16 3 C 0.27 6.29 2.25 -69.07 -0.16 6.14 16 4 H 0.05 1.41 7.51 -51.93 -0.39 1.03 16 5 C -0.53 -13.18 8.73 -34.44 -0.30 -13.48 16 6 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -23.77 11.29 55.43 0.63 -23.15 16 9 Si 0.90 19.79 29.54 -169.99 -5.02 14.77 16 10 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 11 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 13 N -0.70 -13.01 3.46 -54.93 -0.19 -13.20 16 14 C 0.52 9.29 3.57 -10.99 -0.04 9.25 16 15 O -0.53 -11.70 13.09 5.55 0.07 -11.63 16 16 C -0.06 -0.75 0.69 -155.18 -0.11 -0.86 16 17 C -0.07 -0.85 4.86 -104.62 -0.51 -1.35 16 18 C -0.11 -1.10 8.09 -39.58 -0.32 -1.43 16 19 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 20 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 21 C -0.11 -1.29 10.05 -39.58 -0.40 -1.69 16 22 C -0.11 -1.42 8.60 -39.59 -0.34 -1.76 16 23 C 0.12 1.27 6.77 -3.12 -0.02 1.25 16 24 N -0.73 -8.91 6.24 -59.20 -0.37 -9.28 16 25 C 0.53 8.15 8.43 -10.86 -0.09 8.05 16 26 O -0.53 -10.21 18.03 5.56 0.10 -10.11 16 27 C -0.14 -1.88 5.72 -26.74 -0.15 -2.03 16 28 H 0.03 0.73 5.76 -51.93 -0.30 0.43 16 29 H 0.05 1.19 7.93 -51.93 -0.41 0.78 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16 33 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 34 H 0.39 6.37 8.05 -40.82 -0.33 6.04 16 35 H 0.12 0.96 7.31 -52.49 -0.38 0.58 16 36 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 38 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 39 H 0.14 2.23 5.86 -52.48 -0.31 1.92 16 40 H 0.09 1.00 7.67 -51.92 -0.40 0.60 16 41 H 0.08 0.70 6.54 -51.93 -0.34 0.36 16 42 H 0.41 4.28 8.96 -40.82 -0.37 3.91 16 43 H 0.11 1.22 7.26 -51.93 -0.38 0.84 16 44 H 0.12 1.99 6.94 -51.93 -0.36 1.63 16 LS Contribution 352.40 15.07 5.31 5.31 Total: -1.00 -30.91 352.40 -8.55 -39.46 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -5.93 Total: 12.91 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -3.15 Total: -5.08 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: 0.07 Total: -45.63 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: 0.17 Total: -21.74 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.91 -8.55 -39.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597507780.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.201 kcal (2) G-P(sol) polarization free energy of solvation -30.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds