Wall clock time and date at job start Tue Mar 31 2020 11:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46892 * 2 1 4 4 H 1.08991 * 109.46960 * 304.99033 * 3 2 1 5 5 C 1.50709 * 109.47035 * 184.99656 * 3 2 1 6 6 H 1.07996 * 119.99635 * 239.99771 * 5 3 2 7 7 C 1.37878 * 119.99674 * 59.99585 * 5 3 2 8 8 N 1.31509 * 120.00243 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99646 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47391 * 90.00207 * 9 7 5 11 11 H 1.48497 * 109.47013 * 210.00401 * 9 7 5 12 12 H 1.48503 * 109.47376 * 329.99961 * 9 7 5 13 13 N 1.46502 * 109.47210 * 64.99735 * 3 2 1 14 14 C 1.34770 * 119.99937 * 274.99533 * 13 3 2 15 15 O 1.21286 * 120.00013 * 354.58983 * 14 13 3 16 16 C 1.50693 * 120.00265 * 174.57935 * 14 13 3 17 17 C 1.50707 * 110.85404 * 61.60411 * 16 14 13 18 18 C 1.38242 * 119.99699 * 185.00501 * 17 16 14 19 19 C 1.38234 * 119.99417 * 179.76477 * 18 17 16 20 20 C 1.38233 * 120.00022 * 0.49035 * 19 18 17 21 21 C 1.38234 * 120.00154 * 359.78438 * 20 19 18 22 22 C 1.38225 * 120.00080 * 5.27931 * 17 16 14 23 23 C 1.54482 * 110.97313 * 297.77447 * 16 14 13 24 24 N 1.46762 * 105.47231 * 267.29700 * 23 16 14 25 25 C 1.34416 * 111.29967 * 342.97755 * 24 23 16 26 26 O 1.21282 * 124.94156 * 180.44526 * 25 24 23 27 27 C 1.51277 * 110.11929 * 0.41263 * 25 24 23 28 28 H 1.08997 * 109.47733 * 300.00201 * 1 2 3 29 29 H 1.09002 * 109.46996 * 60.00341 * 1 2 3 30 30 H 1.09002 * 109.47370 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46997 * 119.99101 * 2 1 3 32 32 H 1.08997 * 109.47733 * 239.99799 * 2 1 3 33 33 H 0.96998 * 120.00088 * 180.02562 * 8 7 5 34 34 H 0.96995 * 120.00061 * 95.00450 * 13 3 2 35 35 H 1.07995 * 119.99859 * 359.97438 * 18 17 16 36 36 H 1.08001 * 119.99784 * 180.25150 * 19 18 17 37 37 H 1.08008 * 119.99861 * 179.76974 * 20 19 18 38 38 H 1.08003 * 120.00073 * 179.97438 * 21 20 19 39 39 H 1.08008 * 120.00118 * 359.97438 * 22 17 16 40 40 H 1.09007 * 110.23960 * 26.29349 * 23 16 14 41 41 H 1.09001 * 110.24741 * 148.28972 * 23 16 14 42 42 H 0.96997 * 124.35067 * 162.96461 * 24 23 16 43 43 H 1.09005 * 110.48529 * 257.57263 * 27 25 24 44 44 H 1.09001 * 110.48954 * 134.92592 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8890 0.6524 7 6 4.1433 0.8784 -1.2278 8 7 3.4063 0.3374 -2.1731 9 14 6.0050 0.8800 -1.3809 10 1 6.5539 -0.3520 -0.7595 11 1 6.3836 0.9214 -2.8162 12 1 6.5576 2.0720 -0.6887 13 7 1.6523 2.0976 1.2518 14 6 0.4350 2.6645 1.3668 15 8 -0.3018 2.7194 0.4050 16 6 -0.0108 3.2300 2.6906 17 6 0.8974 4.3501 3.1287 18 6 0.7233 4.9362 4.3685 19 6 1.5595 5.9603 4.7722 20 6 2.5632 6.4050 3.9322 21 6 2.7336 5.8226 2.6901 22 6 1.9008 4.7950 2.2885 23 6 -0.0855 2.1246 3.7671 24 7 -1.4712 1.6419 3.7371 25 6 -2.2778 2.5121 3.1054 26 8 -3.4708 2.3634 2.9460 27 6 -1.4811 3.7041 2.6229 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5137 0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 3.8294 -0.0611 -2.9497 34 1 2.2717 2.1233 1.9977 35 1 -0.0637 4.5918 5.0229 36 1 1.4261 6.4156 5.7425 37 1 3.2141 7.2076 4.2462 38 1 3.5175 6.1703 2.0336 39 1 2.0343 4.3397 1.3182 40 1 0.6016 1.3141 3.5237 41 1 0.1491 2.5372 4.7484 42 1 -1.7669 0.8027 4.1233 43 1 -1.6370 4.5589 3.2812 44 1 -1.7539 3.9558 1.5981 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597507780.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:11 Heat of formation + Delta-G solvation = -68.696643 kcal Electronic energy + Delta-G solvation = -27616.056261 eV Core-core repulsion = 23918.043198 eV Total energy + Delta-G solvation = -3698.013063 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.46213 -40.25976 -39.70586 -37.52632 -36.87176 -34.44693 -33.88203 -32.70263 -31.67929 -30.44969 -29.29340 -28.22658 -25.53899 -24.61508 -23.42889 -22.76427 -21.72809 -21.53875 -20.74060 -19.06797 -18.64829 -18.11873 -17.25069 -17.15435 -16.55657 -16.29481 -16.13810 -15.94693 -15.69224 -15.37938 -14.90130 -14.71021 -14.60200 -14.42620 -14.27685 -14.03214 -13.71019 -13.59677 -13.36715 -13.20914 -12.95391 -12.80236 -12.67578 -12.59026 -12.17321 -12.10358 -12.05902 -11.88871 -11.63856 -11.11787 -11.04903 -10.77739 -10.52251 -10.16574 -9.78252 -9.65931 -9.59695 -8.15081 -6.31933 0.39078 0.54483 1.45100 1.46243 1.46768 1.55955 1.70619 2.29339 2.33445 2.51783 2.81884 3.14901 3.19268 3.40139 3.42614 3.86776 3.92006 4.20008 4.21362 4.37141 4.43641 4.46552 4.50062 4.52066 4.57635 4.68976 4.72072 4.79963 4.81166 5.02478 5.09339 5.20576 5.21923 5.39384 5.54112 5.60468 5.61631 5.65382 5.70318 5.72311 5.77766 5.90842 5.91379 6.13748 6.16652 6.75913 6.92048 7.15016 7.33822 7.52062 8.90127 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.011939 B = 0.005388 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.641750 B = 5195.024601 C = 7028.880400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.119 4.119 3 C 0.280 3.720 4 H -0.002 1.002 5 C -0.541 4.541 6 H 0.073 0.927 7 C 0.017 3.983 8 N -0.916 5.916 9 Si 0.966 3.034 10 H -0.272 1.272 11 H -0.291 1.291 12 H -0.263 1.263 13 N -0.694 5.694 14 C 0.518 3.482 15 O -0.581 6.581 16 C -0.044 4.044 17 C -0.076 4.076 18 C -0.104 4.104 19 C -0.112 4.112 20 C -0.115 4.115 21 C -0.124 4.124 22 C -0.132 4.132 23 C 0.117 3.883 24 N -0.717 5.717 25 C 0.522 3.478 26 O -0.579 6.579 27 C -0.132 4.132 28 H 0.041 0.959 29 H 0.021 0.979 30 H 0.044 0.956 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.264 0.736 34 H 0.403 0.597 35 H 0.151 0.849 36 H 0.156 0.844 37 H 0.146 0.854 38 H 0.124 0.876 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.129 0.871 42 H 0.421 0.579 43 H 0.142 0.858 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.233 8.713 19.063 20.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.158 4.158 3 C 0.177 3.823 4 H 0.015 0.985 5 C -0.580 4.580 6 H 0.091 0.909 7 C -0.183 4.183 8 N -0.554 5.554 9 Si 0.791 3.209 10 H -0.197 1.197 11 H -0.217 1.217 12 H -0.188 1.188 13 N -0.343 5.343 14 C 0.304 3.696 15 O -0.461 6.461 16 C -0.048 4.048 17 C -0.077 4.077 18 C -0.122 4.122 19 C -0.130 4.130 20 C -0.133 4.133 21 C -0.142 4.142 22 C -0.150 4.150 23 C -0.007 4.007 24 N -0.372 5.372 25 C 0.310 3.690 26 O -0.460 6.460 27 C -0.173 4.173 28 H 0.060 0.940 29 H 0.040 0.960 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.238 0.762 35 H 0.169 0.831 36 H 0.174 0.826 37 H 0.163 0.837 38 H 0.142 0.858 39 H 0.118 0.882 40 H 0.111 0.889 41 H 0.147 0.853 42 H 0.262 0.738 43 H 0.160 0.840 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.285 8.640 18.068 20.069 hybrid contribution 0.980 -0.710 -0.855 1.482 sum -0.306 7.930 17.214 18.955 Atomic orbital electron populations 1.21660 0.97478 0.99152 0.99857 1.21780 0.93137 0.99339 1.01559 1.18354 0.93716 0.88931 0.81309 0.98455 1.21521 0.91237 1.38670 1.06526 0.90921 1.25719 1.02965 0.94509 0.95094 1.70046 1.36974 1.38465 1.09908 0.85435 0.79557 0.78909 0.76990 1.19745 1.21658 1.18757 1.46229 1.14911 1.55507 1.17632 1.20365 0.81889 0.77584 0.89746 1.90693 1.55098 1.59263 1.41095 1.20519 0.95341 0.95808 0.93099 1.19072 0.95799 0.96769 0.96027 1.21171 1.00217 0.96433 0.94382 1.21479 0.94484 0.96285 1.00708 1.21518 0.98554 0.99887 0.93323 1.21299 0.99202 0.96060 0.97682 1.21308 0.96168 0.98098 0.99442 1.22451 0.82778 0.96171 0.99267 1.46119 1.09546 1.23458 1.58115 1.21006 0.86236 0.85531 0.76254 1.90710 1.16139 1.79305 1.59808 1.22413 0.91324 0.98173 1.05345 0.94004 0.95990 0.93647 0.93571 0.91035 0.92726 0.76156 0.83095 0.82624 0.83658 0.85759 0.88228 0.88924 0.85298 0.73794 0.84036 0.88824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.54 8.59 71.98 0.62 -4.92 16 2 C -0.12 -5.66 5.45 30.59 0.17 -5.49 16 3 C 0.28 13.68 2.25 44.25 0.10 13.78 16 4 H 0.00 -0.15 7.51 -2.39 -0.02 -0.16 16 5 C -0.54 -27.28 8.73 25.60 0.22 -27.05 16 6 H 0.07 3.42 7.74 -2.91 -0.02 3.39 16 7 C 0.02 0.90 5.29 84.66 0.45 1.35 16 8 N -0.92 -51.39 11.29 21.45 0.24 -51.15 16 9 Si 0.97 40.88 29.54 68.60 2.03 42.91 16 10 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 11 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 12 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 13 N -0.69 -26.36 3.46 -446.09 -1.54 -27.91 16 14 C 0.52 19.09 3.57 87.66 0.31 19.40 16 15 O -0.58 -27.14 13.09 -3.05 -0.04 -27.18 16 16 C -0.04 -1.12 0.69 -52.61 -0.04 -1.16 16 17 C -0.08 -1.67 4.86 -19.86 -0.10 -1.77 16 18 C -0.10 -1.55 8.09 22.27 0.18 -1.37 16 19 C -0.11 -1.45 10.05 22.27 0.22 -1.23 16 20 C -0.12 -1.81 10.05 22.27 0.22 -1.59 16 21 C -0.12 -2.73 10.05 22.27 0.22 -2.50 16 22 C -0.13 -3.52 8.60 22.27 0.19 -3.32 16 23 C 0.12 2.20 6.77 86.83 0.59 2.79 16 24 N -0.72 -15.82 6.24 -459.80 -2.87 -18.69 16 25 C 0.52 15.61 8.43 87.90 0.74 16.35 16 26 O -0.58 -22.24 18.03 -3.04 -0.05 -22.30 16 27 C -0.13 -3.56 5.72 30.59 0.18 -3.39 16 28 H 0.04 1.77 5.76 -2.39 -0.01 1.76 16 29 H 0.02 1.06 7.93 -2.39 -0.02 1.05 16 30 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.07 3.86 5.95 -2.39 -0.01 3.85 16 33 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 34 H 0.40 13.09 8.05 -92.71 -0.75 12.35 16 35 H 0.15 1.40 7.31 -2.91 -0.02 1.38 16 36 H 0.16 1.04 8.06 -2.91 -0.02 1.01 16 37 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 38 H 0.12 2.60 8.06 -2.91 -0.02 2.58 16 39 H 0.10 3.41 5.86 -2.91 -0.02 3.40 16 40 H 0.09 1.77 7.67 -2.38 -0.02 1.75 16 41 H 0.13 1.41 6.54 -2.39 -0.02 1.39 16 42 H 0.42 7.73 8.96 -92.71 -0.83 6.89 16 43 H 0.14 2.80 7.26 -2.38 -0.02 2.78 16 44 H 0.09 3.16 6.94 -2.39 -0.02 3.14 16 Total: -1.00 -72.81 352.40 1.51 -71.30 By element: Atomic # 1 Polarization: 33.65 SS G_CDS: -0.53 Total: 33.12 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: 4.28 Total: -0.11 kcal Atomic # 7 Polarization: -93.57 SS G_CDS: -4.17 Total: -97.74 kcal Atomic # 8 Polarization: -49.38 SS G_CDS: -0.09 Total: -49.47 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Total: -72.81 1.51 -71.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597507780.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.600 kcal (2) G-P(sol) polarization free energy of solvation -72.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds