Wall clock time and date at job start Tue Mar 31 2020 11:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46950 * 2 1 4 4 H 1.08996 * 109.47310 * 304.99644 * 3 2 1 5 5 C 1.50702 * 109.46819 * 185.00144 * 3 2 1 6 6 H 1.08008 * 119.99712 * 239.99691 * 5 3 2 7 7 C 1.37873 * 120.00412 * 60.00450 * 5 3 2 8 8 N 1.31517 * 119.99939 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00088 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47394 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47118 * 119.99836 * 9 7 5 12 12 H 1.48507 * 109.46936 * 239.99330 * 9 7 5 13 13 N 1.46500 * 109.47238 * 65.00382 * 3 2 1 14 14 C 1.34778 * 119.99686 * 274.99899 * 13 3 2 15 15 O 1.21283 * 119.99827 * 4.19407 * 14 13 3 16 16 C 1.50700 * 119.99811 * 184.20160 * 14 13 3 17 17 C 1.50690 * 110.88619 * 308.75572 * 16 14 13 18 18 C 1.38234 * 120.00202 * 289.24369 * 17 16 14 19 19 C 1.38239 * 119.99895 * 179.76287 * 18 17 16 20 20 C 1.38228 * 120.00160 * 0.48906 * 19 18 17 21 21 C 1.38238 * 120.00110 * 359.78858 * 20 19 18 22 22 C 1.38234 * 120.00030 * 359.95707 * 21 20 19 23 23 C 1.54309 * 110.74679 * 72.60232 * 16 14 13 24 24 N 1.46756 * 105.56340 * 92.99790 * 23 16 14 25 25 C 1.34416 * 111.30341 * 16.62151 * 24 23 16 26 26 O 1.21291 * 124.94197 * 179.88288 * 25 24 23 27 27 C 1.51278 * 110.11537 * 359.85709 * 25 24 23 28 28 H 1.09004 * 109.46626 * 60.00107 * 1 2 3 29 29 H 1.08997 * 109.46944 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46903 * 300.00006 * 1 2 3 31 31 H 1.09000 * 109.46903 * 239.99994 * 2 1 3 32 32 H 1.08994 * 109.47133 * 120.00039 * 2 1 3 33 33 H 0.96998 * 120.00333 * 180.02562 * 8 7 5 34 34 H 0.96997 * 120.00008 * 94.99516 * 13 3 2 35 35 H 1.07998 * 119.99846 * 0.02562 * 18 17 16 36 36 H 1.08001 * 119.99436 * 180.25472 * 19 18 17 37 37 H 1.08001 * 119.99900 * 179.76468 * 20 19 18 38 38 H 1.07997 * 120.00354 * 179.97438 * 21 20 19 39 39 H 1.07995 * 120.00533 * 180.02562 * 22 21 20 40 40 H 1.08996 * 110.30763 * 333.90912 * 23 16 14 41 41 H 1.09000 * 110.08781 * 211.97287 * 23 16 14 42 42 H 0.97004 * 124.34943 * 196.88346 * 24 23 16 43 43 H 1.08999 * 110.48463 * 102.42754 * 27 25 24 44 44 H 1.09008 * 110.48656 * 225.06763 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3367 -2.1730 9 14 6.0050 0.8801 -1.3811 10 1 6.5988 1.5451 -0.1936 11 1 6.4962 -0.5190 -1.4627 12 1 6.4000 1.6157 -2.6092 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3673 2.5665 0.4629 16 6 0.0712 3.4198 2.6191 17 6 0.3491 2.5910 3.8466 18 6 -0.4406 1.4930 4.1325 19 6 -0.1826 0.7299 5.2559 20 6 0.8586 1.0705 6.0987 21 6 1.6448 2.1719 5.8159 22 6 1.3902 2.9320 4.6898 23 6 0.8166 4.7696 2.6792 24 7 -0.0936 5.7493 2.0746 25 6 -1.3491 5.2738 2.0089 26 8 -2.2981 5.8784 1.5561 27 6 -1.4062 3.8747 2.5813 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8293 -0.0617 -2.9496 34 1 2.2720 2.1231 1.9978 35 1 -1.2564 1.2290 3.4759 36 1 -0.7971 -0.1304 5.4769 37 1 1.0578 0.4765 6.9784 38 1 2.4581 2.4384 6.4747 39 1 2.0045 3.7922 4.4686 40 1 1.7444 4.7151 2.1098 41 1 1.0243 5.0368 3.7153 42 1 0.1769 6.6259 1.7592 43 1 -1.8263 3.8908 3.5869 44 1 -1.9901 3.2209 1.9333 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597507781.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:16 Heat of formation + Delta-G solvation = -47.563326 kcal Electronic energy + Delta-G solvation = -27545.627576 eV Core-core repulsion = 23848.530923 eV Total energy + Delta-G solvation = -3697.096653 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.23801 -39.01671 -38.55294 -36.25042 -35.06332 -33.03488 -32.31624 -31.14686 -30.83179 -29.47596 -27.67598 -26.83097 -24.13049 -23.00520 -22.55189 -21.83051 -20.38009 -19.83580 -19.23245 -17.87251 -17.57755 -16.42507 -16.02800 -15.57759 -15.39417 -15.13097 -14.90783 -14.54670 -14.45817 -14.32982 -13.71001 -13.60559 -13.18668 -13.11951 -12.92911 -12.71926 -12.60004 -12.09021 -11.73605 -11.72419 -11.50684 -11.28256 -11.13796 -10.99954 -10.92982 -10.87105 -10.36184 -10.21636 -9.87495 -9.64829 -9.42672 -9.12169 -9.07487 -8.97854 -8.64938 -8.53588 -7.89426 -6.17020 -4.26838 1.21324 1.32231 2.68371 3.13735 3.19804 3.27954 3.29776 3.35077 3.62442 3.87370 4.20630 4.31107 4.34815 4.57984 4.85458 4.90573 4.99865 5.10774 5.14320 5.19046 5.37359 5.40065 5.41634 5.52321 5.71517 5.84960 5.89533 5.95090 6.36185 6.37931 6.42655 6.45452 6.46153 6.64392 6.77080 6.88214 6.99840 7.02233 7.16212 7.31951 7.38500 7.57418 7.67640 7.84511 8.13673 8.28975 8.57039 8.70638 9.01347 9.40577 10.88256 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.011482 B = 0.004995 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.912232 B = 5604.601861 C = 6480.028335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.126 4.126 3 C 0.272 3.728 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.283 1.283 13 N -0.697 5.697 14 C 0.518 3.482 15 O -0.534 6.534 16 C -0.057 4.057 17 C -0.067 4.067 18 C -0.101 4.101 19 C -0.114 4.114 20 C -0.119 4.119 21 C -0.115 4.115 22 C -0.117 4.117 23 C 0.112 3.888 24 N -0.730 5.730 25 C 0.531 3.469 26 O -0.535 6.535 27 C -0.133 4.133 28 H 0.049 0.951 29 H 0.021 0.979 30 H 0.041 0.959 31 H 0.098 0.902 32 H 0.031 0.969 33 H 0.264 0.736 34 H 0.389 0.611 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.128 0.872 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.411 0.589 43 H 0.108 0.892 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.857 3.872 16.817 17.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.165 4.165 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.727 3.273 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.209 1.209 13 N -0.344 5.344 14 C 0.300 3.700 15 O -0.411 6.411 16 C -0.061 4.061 17 C -0.067 4.067 18 C -0.119 4.119 19 C -0.132 4.132 20 C -0.137 4.137 21 C -0.133 4.133 22 C -0.135 4.135 23 C -0.013 4.013 24 N -0.386 5.386 25 C 0.318 3.682 26 O -0.412 6.412 27 C -0.173 4.173 28 H 0.068 0.932 29 H 0.040 0.960 30 H 0.060 0.940 31 H 0.116 0.884 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.221 0.779 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.141 0.859 39 H 0.146 0.854 40 H 0.109 0.891 41 H 0.105 0.895 42 H 0.250 0.750 43 H 0.126 0.874 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.926 3.901 15.735 16.680 hybrid contribution 1.634 0.177 0.089 1.646 sum -2.292 4.077 15.825 16.502 Atomic orbital electron populations 1.21864 0.98255 0.97938 1.01356 1.21918 0.92689 0.99685 1.02234 1.18821 0.94247 0.89313 0.80598 0.93420 1.21236 0.90611 1.39142 1.06258 0.92070 1.24878 0.98563 0.94777 0.95390 1.69902 1.35063 1.37498 1.09348 0.86423 0.84905 0.77834 0.78112 1.19741 1.20844 1.20893 1.46426 1.14275 1.55224 1.18483 1.19588 0.83376 0.80044 0.86950 1.90714 1.49425 1.60434 1.40570 1.20639 0.96917 0.94623 0.93923 1.19255 0.96805 0.96321 0.94338 1.21016 0.99427 0.94310 0.97135 1.21126 0.97914 0.99413 0.94741 1.21173 0.95696 0.97266 0.99614 1.21100 0.99479 0.95456 0.97284 1.21110 0.97289 1.00299 0.94821 1.22219 0.93539 0.86086 0.99478 1.46137 1.09621 1.19135 1.63718 1.20734 0.82382 0.88132 0.76976 1.90734 1.39044 1.64703 1.46702 1.22354 0.95551 0.95465 1.03978 0.93210 0.96007 0.94047 0.88361 0.95054 0.92569 0.77887 0.85789 0.85938 0.86161 0.85901 0.85401 0.89131 0.89539 0.75007 0.87361 0.86131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.47 37.16 0.31 -2.66 16 2 C -0.13 -2.99 5.45 -26.73 -0.15 -3.13 16 3 C 0.27 6.52 2.24 -69.08 -0.15 6.36 16 4 H 0.05 1.34 7.64 -51.93 -0.40 0.95 16 5 C -0.53 -13.50 8.73 -34.44 -0.30 -13.80 16 6 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.15 11.29 55.43 0.63 -23.52 16 9 Si 0.90 20.04 29.54 -169.99 -5.02 15.02 16 10 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 13 N -0.70 -13.35 4.92 -54.93 -0.27 -13.62 16 14 C 0.52 9.36 5.12 -10.98 -0.06 9.30 16 15 O -0.53 -11.69 12.40 5.55 0.07 -11.62 16 16 C -0.06 -0.76 0.69 -155.27 -0.11 -0.86 16 17 C -0.07 -0.77 4.11 -104.63 -0.43 -1.20 16 18 C -0.10 -1.18 9.13 -39.58 -0.36 -1.54 16 19 C -0.11 -1.16 10.05 -39.58 -0.40 -1.56 16 20 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 21 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 22 C -0.12 -1.15 8.90 -39.58 -0.35 -1.50 16 23 C 0.11 1.24 6.06 -3.22 -0.02 1.22 16 24 N -0.73 -9.18 6.24 -59.30 -0.37 -9.55 16 25 C 0.53 8.33 8.43 -10.86 -0.09 8.24 16 26 O -0.54 -10.37 18.03 5.55 0.10 -10.27 16 27 C -0.13 -1.82 5.19 -26.74 -0.14 -1.96 16 28 H 0.05 1.17 7.80 -51.93 -0.41 0.76 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.04 0.86 5.55 -51.93 -0.29 0.57 16 31 H 0.10 2.59 5.95 -51.93 -0.31 2.28 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 34 H 0.39 6.63 8.11 -40.82 -0.33 6.30 16 35 H 0.12 1.48 7.92 -52.49 -0.42 1.07 16 36 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.13 1.00 6.04 -52.49 -0.32 0.68 16 40 H 0.09 1.02 7.89 -51.93 -0.41 0.61 16 41 H 0.09 0.71 6.07 -51.93 -0.32 0.40 16 42 H 0.41 4.41 8.96 -40.82 -0.37 4.04 16 43 H 0.11 1.20 7.84 -51.93 -0.41 0.79 16 44 H 0.12 1.86 7.09 -51.92 -0.37 1.50 16 LS Contribution 355.06 15.07 5.35 5.35 Total: -1.00 -31.98 355.06 -8.63 -40.61 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -5.98 Total: 11.99 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -3.13 Total: -4.40 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: -0.01 Total: -46.69 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: 0.17 Total: -21.89 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.98 -8.63 -40.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597507781.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.949 kcal (2) G-P(sol) polarization free energy of solvation -31.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds