Wall clock time and date at job start Tue Mar 31 2020 11:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47548 * 2 1 4 4 H 1.08994 * 109.46839 * 55.00101 * 3 2 1 5 5 C 1.50693 * 109.47264 * 175.00702 * 3 2 1 6 6 H 1.08001 * 120.00489 * 120.00199 * 5 3 2 7 7 C 1.37884 * 119.99949 * 299.99462 * 5 3 2 8 8 N 1.31518 * 119.99462 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00068 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47291 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46872 * 120.00480 * 9 7 5 12 12 H 1.48497 * 109.47125 * 240.00463 * 9 7 5 13 13 N 1.46505 * 109.46987 * 295.00778 * 3 2 1 14 14 C 1.34774 * 120.00095 * 84.99609 * 13 3 2 15 15 O 1.21280 * 120.00231 * 355.82584 * 14 13 3 16 16 C 1.50705 * 119.99637 * 175.82755 * 14 13 3 17 17 C 1.50694 * 110.85934 * 61.21154 * 16 14 13 18 18 C 1.38235 * 120.00091 * 66.76375 * 17 16 14 19 19 C 1.38236 * 120.00097 * 179.76433 * 18 17 16 20 20 C 1.38234 * 120.00014 * 0.48408 * 19 18 17 21 21 C 1.38240 * 119.99753 * 359.79445 * 20 19 18 22 22 C 1.38233 * 119.99929 * 247.03393 * 17 16 14 23 23 C 1.54482 * 110.96472 * 185.00600 * 16 14 13 24 24 N 1.46759 * 105.47398 * 92.70182 * 23 16 14 25 25 C 1.34420 * 111.30468 * 17.01467 * 24 23 16 26 26 O 1.21283 * 124.94246 * 179.63111 * 25 24 23 27 27 C 1.51274 * 110.11225 * 359.58995 * 25 24 23 28 28 H 1.08996 * 109.47147 * 59.99500 * 1 2 3 29 29 H 1.08993 * 109.47568 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46713 * 299.99891 * 1 2 3 31 31 H 1.09007 * 109.46713 * 240.00109 * 2 1 3 32 32 H 1.08997 * 109.47670 * 120.00500 * 2 1 3 33 33 H 0.97001 * 119.99545 * 180.02562 * 8 7 5 34 34 H 0.96999 * 119.99738 * 264.99733 * 13 3 2 35 35 H 1.08004 * 120.00033 * 359.97438 * 18 17 16 36 36 H 1.07996 * 120.00215 * 180.25159 * 19 18 17 37 37 H 1.08001 * 120.00310 * 179.76530 * 20 19 18 38 38 H 1.07995 * 119.99829 * 179.97438 * 21 20 19 39 39 H 1.08001 * 120.00038 * 0.02562 * 22 17 16 40 40 H 1.09001 * 110.23901 * 211.69744 * 23 16 14 41 41 H 1.08999 * 110.24529 * 333.69351 * 23 16 14 42 42 H 0.97007 * 124.34644 * 197.03046 * 24 23 16 43 43 H 1.09006 * 110.49041 * 225.06914 * 27 25 24 44 44 H 1.09002 * 110.48727 * 102.42900 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1237 6 1 4.1473 1.8888 -0.6525 7 6 4.1434 0.8783 1.2278 8 7 3.4063 0.3366 2.1728 9 14 6.0051 0.8811 1.3815 10 1 6.5988 1.5471 0.1944 11 1 6.3992 1.6165 2.6099 12 1 6.4971 -0.5177 1.4625 13 7 1.6524 2.0976 -1.2518 14 6 0.4351 2.6645 -1.3668 15 8 -0.3672 2.5670 -0.4625 16 6 0.0709 3.4195 -2.6192 17 6 0.1166 2.5149 -3.8235 18 6 -0.7934 1.4816 -3.9468 19 6 -0.7545 0.6548 -5.0540 20 6 0.2007 0.8550 -6.0330 21 6 1.1143 1.8847 -5.9068 22 6 1.0721 2.7148 -4.8023 23 6 -1.3163 4.0849 -2.4797 24 7 -1.0523 5.4403 -1.9829 25 6 0.2348 5.7841 -2.1623 26 8 0.7192 6.8506 -1.8478 27 6 0.9912 4.6469 -2.8127 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.8294 -0.0612 2.9497 34 1 2.2718 2.1232 -1.9978 35 1 -1.5369 1.3224 -3.1798 36 1 -1.4680 -0.1499 -5.1523 37 1 0.2334 0.2067 -6.8961 38 1 1.8608 2.0409 -6.6714 39 1 1.7861 3.5191 -4.7036 40 1 -1.8127 4.1285 -3.4492 41 1 -1.9288 3.5340 -1.7660 42 1 -1.7207 6.0143 -1.5769 43 1 1.9472 4.4895 -2.3131 44 1 1.1425 4.8468 -3.8735 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597507782.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:20 Heat of formation + Delta-G solvation = -68.745101 kcal Electronic energy + Delta-G solvation = -27550.720921 eV Core-core repulsion = 23852.705757 eV Total energy + Delta-G solvation = -3698.015164 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.39045 -40.21490 -39.73111 -37.56033 -36.70036 -34.57032 -33.86993 -32.53853 -31.89394 -30.34760 -28.98377 -28.52212 -25.45746 -24.45014 -23.55613 -23.00818 -21.56515 -21.38838 -20.70938 -19.16837 -18.66701 -17.98588 -17.28839 -17.08293 -16.56061 -16.53355 -16.03431 -16.00399 -15.71241 -15.43167 -14.93030 -14.70532 -14.61148 -14.42768 -14.08786 -13.97442 -13.60440 -13.47241 -13.34620 -13.18747 -12.94635 -12.87779 -12.72417 -12.68520 -12.14592 -12.05961 -11.94724 -11.72464 -11.54479 -11.09658 -11.04745 -10.76085 -10.53621 -10.19309 -9.74398 -9.65895 -9.55981 -8.17046 -6.33652 0.41951 0.57417 1.42422 1.44016 1.44592 1.55406 1.73000 2.29604 2.36757 2.52598 2.88322 3.12703 3.15570 3.27852 3.53575 3.86595 3.98578 4.17268 4.21039 4.35934 4.45968 4.51671 4.57080 4.61241 4.61958 4.67084 4.73647 4.79394 4.84220 5.08370 5.10627 5.22117 5.28649 5.45954 5.57142 5.61359 5.63578 5.66158 5.70107 5.72259 5.80324 5.90922 5.92284 6.15418 6.17926 6.74410 6.94131 7.13527 7.32481 7.52194 8.88329 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.011285 B = 0.005030 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.534250 B = 5565.462242 C = 6368.754262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.118 4.118 3 C 0.282 3.718 4 H -0.004 1.004 5 C -0.546 4.546 6 H 0.070 0.930 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.965 3.035 10 H -0.260 1.260 11 H -0.286 1.286 12 H -0.278 1.278 13 N -0.696 5.696 14 C 0.517 3.483 15 O -0.571 6.571 16 C -0.041 4.041 17 C -0.078 4.078 18 C -0.117 4.117 19 C -0.122 4.122 20 C -0.119 4.119 21 C -0.117 4.117 22 C -0.119 4.119 23 C 0.126 3.874 24 N -0.716 5.716 25 C 0.514 3.486 26 O -0.581 6.581 27 C -0.145 4.145 28 H 0.052 0.948 29 H 0.041 0.959 30 H 0.024 0.976 31 H 0.038 0.962 32 H 0.069 0.931 33 H 0.264 0.736 34 H 0.401 0.599 35 H 0.116 0.884 36 H 0.138 0.862 37 H 0.144 0.856 38 H 0.147 0.853 39 H 0.144 0.856 40 H 0.114 0.886 41 H 0.092 0.908 42 H 0.419 0.581 43 H 0.102 0.898 44 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.106 1.604 -19.422 21.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.158 4.158 3 C 0.179 3.821 4 H 0.014 0.986 5 C -0.584 4.584 6 H 0.089 0.911 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.790 3.210 10 H -0.184 1.184 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.343 5.343 14 C 0.302 3.698 15 O -0.452 6.452 16 C -0.045 4.045 17 C -0.079 4.079 18 C -0.135 4.135 19 C -0.139 4.139 20 C -0.136 4.136 21 C -0.135 4.135 22 C -0.136 4.136 23 C 0.001 3.999 24 N -0.370 5.370 25 C 0.301 3.699 26 O -0.461 6.461 27 C -0.185 4.185 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.043 0.957 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.235 0.765 35 H 0.134 0.866 36 H 0.156 0.844 37 H 0.162 0.838 38 H 0.165 0.835 39 H 0.162 0.838 40 H 0.131 0.869 41 H 0.110 0.890 42 H 0.259 0.741 43 H 0.120 0.880 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.318 1.906 -18.468 20.344 hybrid contribution 0.792 0.083 0.919 1.216 sum -7.527 1.988 -17.549 19.198 Atomic orbital electron populations 1.21691 0.96663 0.98950 1.00578 1.21748 0.94033 0.98946 1.01024 1.18352 0.93503 0.89263 0.81029 0.98626 1.21607 0.91549 1.38697 1.06592 0.91145 1.25721 1.03047 0.94446 0.95095 1.70051 1.36882 1.38468 1.09871 0.85395 0.79527 0.77853 0.78189 1.18416 1.21244 1.20338 1.46150 1.15376 1.55472 1.17313 1.20360 0.82162 0.79157 0.88115 1.90666 1.50294 1.61787 1.42406 1.20454 0.97658 0.94155 0.92256 1.19072 0.98329 0.96724 0.93743 1.21082 0.98926 0.94998 0.98471 1.21358 0.99525 0.99284 0.93782 1.21534 0.94716 0.97976 0.99416 1.21449 0.99233 0.94842 0.97976 1.21367 0.97850 1.00653 0.93756 1.22183 0.94640 0.81046 1.01991 1.46151 1.10983 1.18047 1.61831 1.21132 0.83603 0.87821 0.77294 1.90723 1.73108 1.27659 1.54625 1.22681 0.99195 0.90797 1.05820 0.92945 0.93969 0.95702 0.94307 0.91301 0.92660 0.76504 0.86566 0.84447 0.83822 0.83497 0.83844 0.86854 0.88968 0.74138 0.87965 0.82798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.27 8.47 71.98 0.61 -4.66 16 2 C -0.12 -5.72 5.45 30.60 0.17 -5.55 16 3 C 0.28 14.11 2.24 44.24 0.10 14.21 16 4 H 0.00 -0.25 7.64 -2.39 -0.02 -0.27 16 5 C -0.55 -28.58 8.73 25.60 0.22 -28.35 16 6 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 7 C 0.02 0.91 5.29 84.66 0.45 1.36 16 8 N -0.91 -52.12 11.29 21.45 0.24 -51.88 16 9 Si 0.97 42.13 29.54 68.60 2.03 44.15 16 10 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 11 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 13 N -0.70 -27.42 4.70 -446.10 -2.10 -29.52 16 14 C 0.52 18.69 5.06 87.66 0.44 19.14 16 15 O -0.57 -24.72 12.33 -3.03 -0.04 -24.76 16 16 C -0.04 -1.04 0.63 -52.62 -0.03 -1.07 16 17 C -0.08 -1.63 4.51 -19.87 -0.09 -1.72 16 18 C -0.12 -2.43 9.15 22.27 0.20 -2.23 16 19 C -0.12 -2.10 10.05 22.27 0.22 -1.87 16 20 C -0.12 -1.76 10.05 22.27 0.22 -1.53 16 21 C -0.12 -1.73 10.05 22.27 0.22 -1.50 16 22 C -0.12 -2.03 8.94 22.27 0.20 -1.83 16 23 C 0.13 2.76 6.34 86.83 0.55 3.31 16 24 N -0.72 -17.61 6.24 -459.82 -2.87 -20.48 16 25 C 0.51 15.56 8.43 87.90 0.74 16.30 16 26 O -0.58 -22.40 18.03 -3.04 -0.05 -22.45 16 27 C -0.15 -3.53 5.20 30.59 0.16 -3.38 16 28 H 0.05 2.13 5.55 -2.39 -0.01 2.12 16 29 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.02 1.16 7.80 -2.38 -0.02 1.14 16 31 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.07 3.76 5.95 -2.39 -0.01 3.75 16 33 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 34 H 0.40 13.84 8.45 -92.71 -0.78 13.05 16 35 H 0.12 2.55 8.04 -2.91 -0.02 2.53 16 36 H 0.14 1.87 8.06 -2.91 -0.02 1.84 16 37 H 0.14 1.43 8.06 -2.91 -0.02 1.40 16 38 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 39 H 0.14 1.97 5.88 -2.91 -0.02 1.95 16 40 H 0.11 1.77 7.88 -2.39 -0.02 1.75 16 41 H 0.09 2.27 6.96 -2.39 -0.02 2.25 16 42 H 0.42 8.91 8.96 -92.70 -0.83 8.08 16 43 H 0.10 2.78 7.70 -2.38 -0.02 2.77 16 44 H 0.15 2.60 5.90 -2.39 -0.01 2.59 16 Total: -1.00 -71.73 355.23 1.03 -70.70 By element: Atomic # 1 Polarization: 34.19 SS G_CDS: -0.57 Total: 33.63 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: 4.39 Total: 0.61 kcal Atomic # 7 Polarization: -97.15 SS G_CDS: -4.72 Total: -101.88 kcal Atomic # 8 Polarization: -47.12 SS G_CDS: -0.09 Total: -47.21 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Total: -71.73 1.03 -70.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597507782.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.955 kcal (2) G-P(sol) polarization free energy of solvation -71.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds