Wall clock time and date at job start Tue Mar 31 2020 11:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50699 * 119.99741 * 2 1 4 4 N 1.46903 * 109.46861 * 124.96232 * 3 2 1 5 5 C 1.46908 * 110.99701 * 190.94199 * 4 3 2 6 6 C 1.50695 * 109.46871 * 70.93524 * 5 4 3 7 7 H 1.08001 * 120.00373 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99807 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00393 * 179.97438 * 8 6 5 10 10 Si 1.86807 * 119.99867 * 0.02562 * 8 6 5 11 11 H 1.48494 * 109.47255 * 89.99763 * 10 8 6 12 12 H 1.48506 * 109.46997 * 209.99728 * 10 8 6 13 13 H 1.48495 * 109.47138 * 329.99513 * 10 8 6 14 14 C 1.46897 * 111.00487 * 66.98727 * 4 3 2 15 15 C 1.52994 * 109.47293 * 201.21456 * 14 4 3 16 16 H 1.08998 * 109.46659 * 53.66201 * 15 14 4 17 17 O 1.42894 * 109.47270 * 293.66003 * 15 14 4 18 18 C 1.53004 * 109.47222 * 173.65585 * 15 14 4 19 19 O 1.42894 * 109.47095 * 185.00342 * 18 15 14 20 20 C 1.35712 * 116.99657 * 180.02562 * 19 18 15 21 21 C 1.38635 * 120.14972 * 359.97438 * 20 19 18 22 22 C 1.38108 * 120.09263 * 179.97438 * 21 20 19 23 23 C 1.38519 * 120.39132 * 0.02562 * 22 21 20 24 24 C 1.37819 * 120.29422 * 0.02669 * 23 22 21 25 25 C 1.39723 * 119.90292 * 359.65611 * 24 23 22 26 26 C 1.43198 * 120.19550 * 180.31996 * 25 24 23 27 27 N 9.05083 * 127.85448 * 104.69640 * 2 1 3 28 28 H 1.08006 * 120.00034 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.00363 * 180.02562 * 1 2 3 30 30 H 1.07995 * 119.99697 * 180.02562 * 2 1 3 31 31 H 1.08993 * 109.47758 * 4.95481 * 3 2 1 32 32 H 1.09000 * 109.46866 * 244.95740 * 3 2 1 33 33 H 1.08999 * 109.46897 * 190.93408 * 5 4 3 34 34 H 1.09003 * 109.46794 * 310.93347 * 5 4 3 35 35 H 0.97003 * 120.00404 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.46945 * 81.21372 * 14 4 3 37 37 H 1.08998 * 109.47082 * 321.22126 * 14 4 3 38 38 H 0.96703 * 114.00023 * 299.99306 * 17 15 14 39 39 H 1.09003 * 109.47169 * 305.00575 * 18 15 14 40 40 H 1.09002 * 109.46852 * 65.00036 * 18 15 14 41 41 H 1.07994 * 119.95727 * 0.02562 * 21 20 19 42 42 H 1.08004 * 119.80843 * 179.97438 * 22 21 20 43 43 H 1.08002 * 119.85372 * 180.02562 * 23 22 21 44 44 H 1.08004 * 120.04887 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9956 1.3323 1.1351 5 6 3.5569 2.6769 1.3232 6 6 2.4876 3.5981 1.8514 7 1 1.4910 3.2224 2.0299 8 6 2.7820 4.9205 2.1077 9 7 1.8488 5.7247 2.5681 10 14 4.5061 5.5702 1.7995 11 1 4.6027 6.0767 0.4070 12 1 4.7960 6.6746 2.7491 13 1 5.4902 4.4760 1.9977 14 6 4.0616 0.3360 0.9651 15 6 4.6791 0.0124 2.3269 16 1 3.8924 -0.2800 3.0223 17 8 5.3547 1.1667 2.8299 18 6 5.6777 -1.1368 2.1740 19 8 6.1675 -1.5166 3.4615 20 6 7.0695 -2.5297 3.5031 21 6 7.4767 -3.1482 2.3311 22 6 8.3951 -4.1787 2.3748 23 6 8.9156 -4.6025 3.5864 24 6 8.5213 -3.9998 4.7615 25 6 7.5979 -2.9517 4.7309 26 6 7.1889 -2.3165 5.9474 27 7 6.8641 -1.8130 6.9125 28 1 -0.5400 0.9354 0.0004 29 1 -0.5401 -0.9353 0.0004 30 1 1.8499 -0.9353 -0.0004 31 1 1.3586 2.1317 0.0887 32 1 2.6218 1.4023 -0.9311 33 1 4.3807 2.6303 2.0354 34 1 3.9229 3.0546 0.3685 35 1 2.0560 6.6549 2.7488 36 1 4.8300 0.7354 0.3033 37 1 3.6440 -0.5722 0.5303 38 1 6.0694 1.4834 2.2607 39 1 5.1826 -1.9887 1.7077 40 1 6.5103 -0.8138 1.5491 41 1 7.0758 -2.8231 1.3824 42 1 8.7088 -4.6575 1.4589 43 1 9.6337 -5.4089 3.6105 44 1 8.9294 -4.3338 5.7040 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599430053.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:14 Heat of formation + Delta-G solvation = 5.120698 kcal Electronic energy + Delta-G solvation = -25599.813705 eV Core-core repulsion = 21905.001603 eV Total energy + Delta-G solvation = -3694.812102 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.69166 -38.68071 -37.58634 -36.41366 -35.87488 -33.11684 -32.28798 -31.85429 -31.02884 -30.02803 -27.75735 -26.30872 -24.31321 -23.85044 -22.54182 -21.58655 -20.52623 -19.49565 -19.23864 -17.96623 -16.92725 -16.66773 -16.62425 -15.86647 -15.46314 -15.42373 -15.13957 -14.75478 -14.43083 -14.11623 -13.89323 -13.66799 -13.44713 -13.31770 -13.19415 -12.84271 -12.67084 -12.52021 -12.25176 -12.00803 -11.83703 -11.78541 -11.60199 -11.33906 -11.26476 -10.81297 -10.77192 -10.62563 -10.28073 -9.89027 -9.60316 -9.44437 -9.21655 -8.90753 -8.63373 -8.48195 -7.45097 -5.98644 -3.94154 0.45028 0.95344 2.59494 2.65207 2.73713 2.76520 3.31087 3.39941 3.40862 3.59665 3.72455 4.30382 4.44728 4.45871 4.47988 4.54683 4.68722 4.85936 4.88350 4.99804 5.06542 5.11413 5.29808 5.32382 5.33976 5.36085 5.44487 5.52846 5.70373 5.75028 5.80289 5.97246 5.97864 6.17191 6.19832 6.24824 6.43668 6.85562 6.93011 6.95550 7.02914 7.18090 7.48112 7.71000 7.87066 7.89602 7.99824 8.70796 9.10272 9.63328 11.14950 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.012747 B = 0.003265 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.994292 B = 8572.636348 C = 9760.261940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.141 4.141 3 C 0.083 3.917 4 N -0.514 5.514 5 C 0.145 3.855 6 C -0.503 4.503 7 H 0.078 0.922 8 C 0.067 3.933 9 N -0.903 5.903 10 Si 0.876 3.124 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.265 1.265 14 C 0.024 3.976 15 C 0.117 3.883 16 H 0.117 0.883 17 O -0.531 6.531 18 C 0.026 3.974 19 O -0.292 6.292 20 C 0.182 3.818 21 C -0.214 4.214 22 C -0.049 4.049 23 C -0.164 4.164 24 C -0.033 4.033 25 C -0.064 4.064 26 C 0.257 3.743 27 N -0.411 5.411 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.028 0.972 33 H 0.065 0.935 34 H -0.023 1.023 35 H 0.262 0.738 36 H 0.032 0.968 37 H 0.075 0.925 38 H 0.366 0.634 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.138 0.862 42 H 0.132 0.868 43 H 0.134 0.866 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.916 -23.074 -6.035 27.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.160 4.160 3 C -0.044 4.044 4 N -0.237 5.237 5 C 0.019 3.981 6 C -0.541 4.541 7 H 0.096 0.904 8 C -0.134 4.134 9 N -0.543 5.543 10 Si 0.704 3.296 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.190 1.190 14 C -0.105 4.105 15 C 0.057 3.943 16 H 0.135 0.865 17 O -0.335 6.335 18 C -0.050 4.050 19 O -0.204 6.204 20 C 0.132 3.868 21 C -0.233 4.233 22 C -0.068 4.068 23 C -0.183 4.183 24 C -0.053 4.053 25 C -0.068 4.068 26 C -0.058 4.058 27 N -0.086 5.086 28 H 0.117 0.883 29 H 0.109 0.891 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.046 0.954 33 H 0.083 0.917 34 H -0.006 1.006 35 H 0.072 0.928 36 H 0.050 0.950 37 H 0.093 0.907 38 H 0.212 0.788 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.156 0.844 42 H 0.150 0.850 43 H 0.152 0.848 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 12.587 -22.134 -3.416 25.690 hybrid contribution 1.802 0.428 -2.028 2.747 sum 14.389 -21.706 -5.444 26.605 Atomic orbital electron populations 1.23769 0.95983 1.01495 1.01728 1.22946 0.96003 0.98113 0.98908 1.21235 0.96011 0.95893 0.91275 1.61916 1.15017 1.07301 1.39475 1.20662 0.97800 0.84343 0.95288 1.21001 0.97837 0.92829 1.42448 0.90400 1.24880 0.96682 0.96841 0.95016 1.69893 1.32994 1.05561 1.45817 0.86853 0.85984 0.78959 0.77853 1.20727 1.21307 1.18956 1.22629 0.95145 0.97915 0.94814 1.21983 0.92456 0.82768 0.97141 0.86516 1.86829 1.51146 1.44732 1.50824 1.23865 0.98411 0.99624 0.83105 1.86223 1.54415 1.47392 1.32339 1.19072 0.88074 0.87013 0.92665 1.21254 1.03668 1.01073 0.97273 1.21193 0.93271 0.93905 0.98439 1.20979 1.03050 1.02466 0.91783 1.21044 0.92904 0.91814 0.99548 1.15344 1.04651 1.01335 0.85476 1.25307 0.93939 0.93728 0.92819 1.81248 1.07893 1.07977 1.11514 0.88319 0.89138 0.88418 0.88634 0.95420 0.91709 1.00554 0.92790 0.94980 0.90657 0.78776 0.90630 0.91321 0.84425 0.85015 0.84850 0.84381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.73 14.32 29.01 0.42 -2.31 16 2 C -0.14 -2.11 9.18 -36.03 -0.33 -2.44 16 3 C 0.08 1.50 5.25 -4.97 -0.03 1.48 16 4 N -0.51 -10.10 4.36 -237.52 -1.04 -11.14 16 5 C 0.14 3.40 3.59 -4.97 -0.02 3.38 16 6 C -0.50 -14.36 8.97 -34.44 -0.31 -14.67 16 7 H 0.08 2.45 7.77 -52.49 -0.41 2.04 16 8 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 9 N -0.90 -28.19 13.96 55.43 0.77 -27.42 16 10 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 14 C 0.02 0.35 4.65 -3.83 -0.02 0.34 16 15 C 0.12 1.69 3.47 -26.73 -0.09 1.59 16 16 H 0.12 1.94 8.14 -51.93 -0.42 1.52 16 17 O -0.53 -9.26 10.54 -40.08 -0.42 -9.68 16 18 C 0.03 0.27 4.37 37.16 0.16 0.43 16 19 O -0.29 -3.75 9.53 -23.69 -0.23 -3.97 16 20 C 0.18 1.88 6.69 -38.71 -0.26 1.62 16 21 C -0.21 -1.57 9.03 -39.48 -0.36 -1.92 16 22 C -0.05 -0.27 10.03 -39.53 -0.40 -0.67 16 23 C -0.16 -0.88 10.02 -39.63 -0.40 -1.27 16 24 C -0.03 -0.23 9.76 -39.18 -0.38 -0.61 16 25 C -0.06 -0.66 5.75 -106.69 -0.61 -1.27 16 26 C 0.26 3.49 14.87 -22.48 -0.33 3.15 16 27 N -0.41 -6.69 18.54 41.83 0.78 -5.91 16 28 H 0.10 1.48 7.84 -52.48 -0.41 1.07 16 29 H 0.09 1.08 8.06 -52.49 -0.42 0.65 16 30 H 0.10 1.24 6.79 -52.49 -0.36 0.88 16 31 H 0.10 2.01 6.67 -51.93 -0.35 1.66 16 32 H 0.03 0.47 8.11 -51.93 -0.42 0.05 16 33 H 0.07 1.54 3.97 -51.93 -0.21 1.33 16 34 H -0.02 -0.54 7.49 -51.93 -0.39 -0.93 16 35 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 36 H 0.03 0.43 7.98 -51.93 -0.41 0.02 16 37 H 0.08 0.90 6.18 -51.93 -0.32 0.58 16 38 H 0.37 5.08 8.87 45.56 0.40 5.48 16 39 H 0.08 0.60 7.66 -51.93 -0.40 0.20 16 40 H 0.07 0.57 7.66 -51.93 -0.40 0.17 16 41 H 0.14 0.78 6.30 -52.49 -0.33 0.45 16 42 H 0.13 0.39 8.06 -52.48 -0.42 -0.04 16 43 H 0.13 0.38 8.06 -52.49 -0.42 -0.05 16 44 H 0.14 0.68 8.06 -52.48 -0.42 0.26 16 LS Contribution 372.56 15.07 5.61 5.61 Total: -1.00 -35.56 372.56 -7.52 -43.08 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -5.28 Total: 3.66 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: -3.05 Total: -11.31 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 0.51 Total: -44.47 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -0.65 Total: -13.65 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.56 -7.52 -43.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599430053.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.200 kcal (2) G-P(sol) polarization free energy of solvation -35.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds