Wall clock time and date at job start Tue Mar 31 2020 11:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50699 * 119.99741 * 2 1 4 4 N 1.46903 * 109.46861 * 124.96232 * 3 2 1 5 5 C 1.46908 * 110.99701 * 190.94199 * 4 3 2 6 6 C 1.50695 * 109.46871 * 70.93524 * 5 4 3 7 7 H 1.08001 * 120.00373 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99807 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00393 * 179.97438 * 8 6 5 10 10 Si 1.86807 * 119.99867 * 0.02562 * 8 6 5 11 11 H 1.48494 * 109.47255 * 89.99763 * 10 8 6 12 12 H 1.48506 * 109.46997 * 209.99728 * 10 8 6 13 13 H 1.48495 * 109.47138 * 329.99513 * 10 8 6 14 14 C 1.46897 * 111.00487 * 66.98727 * 4 3 2 15 15 C 1.52994 * 109.47293 * 201.21456 * 14 4 3 16 16 H 1.08998 * 109.46659 * 53.66201 * 15 14 4 17 17 O 1.42894 * 109.47270 * 293.66003 * 15 14 4 18 18 C 1.53004 * 109.47222 * 173.65585 * 15 14 4 19 19 O 1.42894 * 109.47095 * 185.00342 * 18 15 14 20 20 C 1.35712 * 116.99657 * 180.02562 * 19 18 15 21 21 C 1.38635 * 120.14972 * 359.97438 * 20 19 18 22 22 C 1.38108 * 120.09263 * 179.97438 * 21 20 19 23 23 C 1.38519 * 120.39132 * 0.02562 * 22 21 20 24 24 C 1.37819 * 120.29422 * 0.02669 * 23 22 21 25 25 C 1.39723 * 119.90292 * 359.65611 * 24 23 22 26 26 C 1.43198 * 120.19550 * 180.31996 * 25 24 23 27 27 N 9.05083 * 127.85448 * 104.69640 * 2 1 3 28 28 H 1.08006 * 120.00034 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.00363 * 180.02562 * 1 2 3 30 30 H 1.07995 * 119.99697 * 180.02562 * 2 1 3 31 31 H 1.08993 * 109.47758 * 4.95481 * 3 2 1 32 32 H 1.09000 * 109.46866 * 244.95740 * 3 2 1 33 33 H 1.08999 * 109.46897 * 190.93408 * 5 4 3 34 34 H 1.09003 * 109.46794 * 310.93347 * 5 4 3 35 35 H 0.97003 * 120.00404 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.46945 * 81.21372 * 14 4 3 37 37 H 1.08998 * 109.47082 * 321.22126 * 14 4 3 38 38 H 0.96703 * 114.00023 * 299.99306 * 17 15 14 39 39 H 1.09003 * 109.47169 * 305.00575 * 18 15 14 40 40 H 1.09002 * 109.46852 * 65.00036 * 18 15 14 41 41 H 1.07994 * 119.95727 * 0.02562 * 21 20 19 42 42 H 1.08004 * 119.80843 * 179.97438 * 22 21 20 43 43 H 1.08002 * 119.85372 * 180.02562 * 23 22 21 44 44 H 1.08004 * 120.04887 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9956 1.3323 1.1351 5 6 3.5569 2.6769 1.3232 6 6 2.4876 3.5981 1.8514 7 1 1.4910 3.2224 2.0299 8 6 2.7820 4.9205 2.1077 9 7 1.8488 5.7247 2.5681 10 14 4.5061 5.5702 1.7995 11 1 4.6027 6.0767 0.4070 12 1 4.7960 6.6746 2.7491 13 1 5.4902 4.4760 1.9977 14 6 4.0616 0.3360 0.9651 15 6 4.6791 0.0124 2.3269 16 1 3.8924 -0.2800 3.0223 17 8 5.3547 1.1667 2.8299 18 6 5.6777 -1.1368 2.1740 19 8 6.1675 -1.5166 3.4615 20 6 7.0695 -2.5297 3.5031 21 6 7.4767 -3.1482 2.3311 22 6 8.3951 -4.1787 2.3748 23 6 8.9156 -4.6025 3.5864 24 6 8.5213 -3.9998 4.7615 25 6 7.5979 -2.9517 4.7309 26 6 7.1889 -2.3165 5.9474 27 7 6.8641 -1.8130 6.9125 28 1 -0.5400 0.9354 0.0004 29 1 -0.5401 -0.9353 0.0004 30 1 1.8499 -0.9353 -0.0004 31 1 1.3586 2.1317 0.0887 32 1 2.6218 1.4023 -0.9311 33 1 4.3807 2.6303 2.0354 34 1 3.9229 3.0546 0.3685 35 1 2.0560 6.6549 2.7488 36 1 4.8300 0.7354 0.3033 37 1 3.6440 -0.5722 0.5303 38 1 6.0694 1.4834 2.2607 39 1 5.1826 -1.9887 1.7077 40 1 6.5103 -0.8138 1.5491 41 1 7.0758 -2.8231 1.3824 42 1 8.7088 -4.6575 1.4589 43 1 9.6337 -5.4089 3.6105 44 1 8.9294 -4.3338 5.7040 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599430053.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:13 Heat of formation + Delta-G solvation = -21.491460 kcal Electronic energy + Delta-G solvation = -25600.967695 eV Core-core repulsion = 21905.001603 eV Total energy + Delta-G solvation = -3695.966092 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.37566 -39.78458 -38.53519 -37.42285 -37.13078 -34.91406 -33.91428 -32.57286 -31.96953 -30.86273 -29.48233 -27.40905 -25.46706 -24.84767 -23.50505 -22.52710 -22.16033 -20.52281 -20.15162 -18.99412 -18.62290 -17.71703 -17.51803 -17.04194 -16.60502 -16.43673 -16.00086 -15.86076 -15.46331 -15.36650 -15.25876 -14.80628 -14.69140 -14.45193 -14.27459 -14.11528 -13.91539 -13.71440 -13.40263 -13.32355 -13.00172 -12.79828 -12.52388 -12.50733 -12.41384 -12.24446 -11.97409 -11.91357 -11.80624 -11.59532 -11.39045 -10.86368 -10.55673 -10.25728 -9.99273 -9.24176 -8.94617 -8.25474 -6.26112 -0.14855 0.44170 1.32238 1.37831 1.43553 1.47970 1.66154 1.98456 1.98841 2.36893 2.91014 2.94973 3.09174 3.27883 3.48052 3.76890 3.93268 3.98322 4.04920 4.09691 4.20003 4.29133 4.32215 4.37931 4.43557 4.47263 4.50177 4.56279 4.69490 4.86976 4.91141 4.97227 5.07038 5.10161 5.23831 5.26654 5.37482 5.52852 5.68022 5.72650 5.78737 5.99418 6.03539 6.28601 6.42111 6.52828 6.70318 6.79333 6.85383 7.35873 8.92095 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.012747 B = 0.003265 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.994292 B = 8572.636348 C = 9760.261940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.145 4.145 3 C 0.085 3.915 4 N -0.539 5.539 5 C 0.157 3.843 6 C -0.508 4.508 7 H 0.026 0.974 8 C -0.001 4.001 9 N -0.957 5.957 10 Si 0.949 3.051 11 H -0.266 1.266 12 H -0.290 1.290 13 H -0.238 1.238 14 C 0.028 3.972 15 C 0.115 3.885 16 H 0.083 0.917 17 O -0.567 6.567 18 C 0.035 3.965 19 O -0.331 6.331 20 C 0.161 3.839 21 C -0.213 4.213 22 C -0.037 4.037 23 C -0.155 4.155 24 C -0.030 4.030 25 C -0.098 4.098 26 C 0.279 3.721 27 N -0.481 5.481 28 H 0.077 0.923 29 H 0.122 0.878 30 H 0.134 0.866 31 H 0.048 0.952 32 H 0.043 0.957 33 H 0.069 0.931 34 H -0.018 1.018 35 H 0.263 0.737 36 H 0.054 0.946 37 H 0.110 0.890 38 H 0.379 0.621 39 H 0.106 0.894 40 H 0.096 0.904 41 H 0.159 0.841 42 H 0.168 0.832 43 H 0.167 0.833 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.517 -26.747 -9.039 33.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.163 4.163 3 C -0.043 4.043 4 N -0.263 5.263 5 C 0.030 3.970 6 C -0.547 4.547 7 H 0.045 0.955 8 C -0.197 4.197 9 N -0.599 5.599 10 Si 0.773 3.227 11 H -0.191 1.191 12 H -0.216 1.216 13 H -0.162 1.162 14 C -0.100 4.100 15 C 0.055 3.945 16 H 0.101 0.899 17 O -0.374 6.374 18 C -0.040 4.040 19 O -0.244 6.244 20 C 0.112 3.888 21 C -0.231 4.231 22 C -0.055 4.055 23 C -0.173 4.173 24 C -0.050 4.050 25 C -0.102 4.102 26 C -0.035 4.035 27 N -0.158 5.158 28 H 0.095 0.905 29 H 0.140 0.860 30 H 0.151 0.849 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.000 1.000 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.128 0.872 38 H 0.228 0.772 39 H 0.124 0.876 40 H 0.114 0.886 41 H 0.177 0.823 42 H 0.186 0.814 43 H 0.184 0.816 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 16.197 -25.852 -6.444 31.180 hybrid contribution 0.614 1.425 -1.135 1.923 sum 16.812 -24.427 -7.579 30.606 Atomic orbital electron populations 1.23949 0.96125 1.02042 1.00825 1.22964 0.96097 0.97654 0.99620 1.21140 0.95378 0.96321 0.91424 1.61723 1.17176 1.06366 1.40987 1.20380 0.95911 0.85682 0.95027 1.21343 0.97258 0.94111 1.41950 0.95527 1.25919 1.01781 0.97174 0.94842 1.70079 1.35849 1.06038 1.47905 0.85679 0.80255 0.78625 0.78167 1.19133 1.21645 1.16160 1.22717 0.94279 0.97621 0.95378 1.21944 0.92875 0.83606 0.96082 0.89929 1.86761 1.52027 1.46350 1.52230 1.23739 0.98463 0.98894 0.82874 1.86150 1.55655 1.48828 1.33724 1.19305 0.88471 0.87291 0.93688 1.21529 1.03779 1.01092 0.96750 1.21685 0.91446 0.92503 0.99885 1.21417 1.02595 1.02330 0.90915 1.21315 0.91761 0.90616 1.01327 1.15691 1.07050 1.03267 0.84216 1.26037 0.92237 0.92352 0.92881 1.81237 1.10481 1.10428 1.13677 0.90463 0.85980 0.84885 0.93351 0.93918 0.91359 1.00003 0.92782 0.92820 0.87226 0.77227 0.87596 0.88557 0.82311 0.81445 0.81563 0.82898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.30 14.32 67.78 0.97 -4.33 16 2 C -0.15 -4.09 9.18 25.64 0.24 -3.86 16 3 C 0.08 3.06 5.25 85.56 0.45 3.51 16 4 N -0.54 -21.06 4.36 -905.38 -3.95 -25.01 16 5 C 0.16 7.38 3.59 85.55 0.31 7.69 16 6 C -0.51 -30.47 8.97 25.60 0.23 -30.24 16 7 H 0.03 1.80 7.77 -2.91 -0.02 1.78 16 8 C 0.00 -0.08 5.47 84.65 0.46 0.38 16 9 N -0.96 -62.76 13.96 21.45 0.30 -62.46 16 10 Si 0.95 45.43 27.47 68.60 1.88 47.31 16 11 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 12 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 13 H -0.24 -10.30 6.54 99.48 0.65 -9.65 16 14 C 0.03 0.74 4.65 86.30 0.40 1.14 16 15 C 0.11 3.16 3.47 30.59 0.11 3.27 16 16 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 17 O -0.57 -19.47 10.54 -144.34 -1.52 -20.99 16 18 C 0.04 0.62 4.37 71.98 0.31 0.94 16 19 O -0.33 -8.12 9.53 -85.69 -0.82 -8.94 16 20 C 0.16 3.01 6.69 22.83 0.15 3.17 16 21 C -0.21 -2.17 9.03 22.33 0.20 -1.97 16 22 C -0.04 -0.20 10.03 22.31 0.22 0.03 16 23 C -0.15 -0.90 10.02 22.24 0.22 -0.67 16 24 C -0.03 -0.34 9.76 22.53 0.22 -0.12 16 25 C -0.10 -1.92 5.75 -21.21 -0.12 -2.04 16 26 C 0.28 7.85 14.87 88.33 1.31 9.16 16 27 N -0.48 -16.69 18.54 19.00 0.35 -16.34 16 28 H 0.08 2.44 7.84 -2.91 -0.02 2.41 16 29 H 0.12 2.60 8.06 -2.91 -0.02 2.57 16 30 H 0.13 2.82 6.79 -2.91 -0.02 2.80 16 31 H 0.05 2.17 6.67 -2.39 -0.02 2.15 16 32 H 0.04 1.39 8.11 -2.39 -0.02 1.37 16 33 H 0.07 3.21 3.97 -2.39 -0.01 3.20 16 34 H -0.02 -0.81 7.49 -2.39 -0.02 -0.82 16 35 H 0.26 16.15 8.31 -92.71 -0.77 15.38 16 36 H 0.05 1.22 7.98 -2.39 -0.02 1.21 16 37 H 0.11 2.11 6.18 -2.39 -0.01 2.10 16 38 H 0.38 9.90 8.87 -74.06 -0.66 9.24 16 39 H 0.11 1.19 7.66 -2.39 -0.02 1.18 16 40 H 0.10 1.16 7.66 -2.39 -0.02 1.14 16 41 H 0.16 0.88 6.30 -2.91 -0.02 0.86 16 42 H 0.17 -0.22 8.06 -2.91 -0.02 -0.24 16 43 H 0.17 -0.08 8.06 -2.91 -0.02 -0.10 16 44 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 Total: -1.00 -86.68 372.56 2.25 -84.44 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.31 Total: 15.94 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: 5.69 Total: -13.95 kcal Atomic # 7 Polarization: -100.51 SS G_CDS: -3.30 Total: -103.81 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -2.34 Total: -29.93 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.88 Total: 47.31 kcal Total: -86.68 2.25 -84.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599430053.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.945 kcal (2) G-P(sol) polarization free energy of solvation -86.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds