Wall clock time and date at job start Tue Mar 31 2020 11:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 120.00232 * 2 1 4 4 N 1.46903 * 109.47193 * 124.99678 * 3 2 1 5 5 C 1.46901 * 110.99955 * 288.24739 * 4 3 2 6 6 C 1.50697 * 109.47181 * 298.83484 * 5 4 3 7 7 H 1.08001 * 120.00310 * 4.45734 * 6 5 4 8 8 C 1.37875 * 119.99754 * 184.44632 * 6 5 4 9 9 N 1.31512 * 120.00019 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99756 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47456 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47274 * 120.00247 * 10 8 6 13 13 H 1.48508 * 109.47161 * 240.00123 * 10 8 6 14 14 C 1.46901 * 110.99702 * 164.29250 * 4 3 2 15 15 C 1.53004 * 109.46896 * 200.14395 * 14 4 3 16 16 H 1.08993 * 109.47216 * 300.78451 * 15 14 4 17 17 O 1.42897 * 109.46761 * 60.78334 * 15 14 4 18 18 C 1.53007 * 109.46813 * 180.78262 * 15 14 4 19 19 O 1.42899 * 109.46405 * 175.00145 * 18 15 14 20 20 C 1.35711 * 116.99419 * 179.97438 * 19 18 15 21 21 C 1.38646 * 120.15002 * 0.02562 * 20 19 18 22 22 C 1.38098 * 120.09267 * 179.97438 * 21 20 19 23 23 C 1.38520 * 120.39166 * 0.02562 * 22 21 20 24 24 C 1.37818 * 120.29599 * 0.02562 * 23 22 21 25 25 C 1.39714 * 119.90009 * 359.65682 * 24 23 22 26 26 C 1.43205 * 120.19475 * 180.32035 * 25 24 23 27 27 N 9.81717 * 146.73354 * 70.84242 * 2 1 3 28 28 H 1.08007 * 119.99571 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.00319 * 179.97438 * 1 2 3 30 30 H 1.07997 * 119.99699 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.47066 * 4.99776 * 3 2 1 32 32 H 1.09003 * 109.47083 * 244.99715 * 3 2 1 33 33 H 1.09000 * 109.47030 * 58.84021 * 5 4 3 34 34 H 1.09005 * 109.46781 * 178.83433 * 5 4 3 35 35 H 0.97007 * 120.00161 * 179.97438 * 9 8 6 36 36 H 1.08998 * 109.46949 * 80.14789 * 14 4 3 37 37 H 1.08994 * 109.47533 * 320.14534 * 14 4 3 38 38 H 0.96699 * 114.00166 * 59.99919 * 17 15 14 39 39 H 1.09000 * 109.46859 * 294.99741 * 18 15 14 40 40 H 1.09001 * 109.47091 * 55.00324 * 18 15 14 41 41 H 1.07998 * 119.95028 * 0.02562 * 21 20 19 42 42 H 1.08005 * 119.80610 * 179.97438 * 22 21 20 43 43 H 1.08004 * 119.85174 * 179.97438 * 23 22 21 44 44 H 1.07997 * 120.05035 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3319 1.1346 5 6 2.2752 1.4834 2.4054 6 6 1.5186 2.7867 2.4014 7 1 1.5097 3.4032 1.5148 8 6 0.8375 3.1918 3.5297 9 7 0.8486 2.4411 4.6095 10 14 -0.1010 4.8069 3.5245 11 1 0.0433 5.4590 2.1982 12 1 -1.5377 4.5455 3.7944 13 1 0.4458 5.7005 4.5770 14 6 3.9978 2.3936 0.9676 15 6 5.2103 2.0945 1.8516 16 1 4.8951 2.0371 2.8934 17 8 5.7895 0.8483 1.4597 18 6 6.2450 3.2104 1.6925 19 8 7.3244 2.9922 2.6032 20 6 8.3345 3.8984 2.5897 21 6 8.2908 4.9770 1.7196 22 6 9.3191 5.8988 1.7072 23 6 10.4002 5.7541 2.5610 24 6 10.4606 4.6875 3.4317 25 6 9.4240 3.7513 3.4592 26 6 9.4770 2.6444 4.3662 27 7 9.5184 1.7672 5.0868 28 1 -0.5400 0.9354 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8499 -0.9353 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6214 1.4025 -0.9314 33 1 1.5749 0.6570 2.5266 34 1 2.9879 1.4796 3.2302 35 1 0.3697 2.7263 5.4034 36 1 3.5642 3.3508 1.2574 37 1 4.3106 2.4374 -0.0755 38 1 6.0932 0.8271 0.5419 39 1 6.6256 3.2099 0.6711 40 1 5.7782 4.1719 1.9060 41 1 7.4510 5.0968 1.0511 42 1 9.2805 6.7370 1.0272 43 1 11.1998 6.4800 2.5437 44 1 11.3052 4.5789 4.0959 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599430054.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:17 Heat of formation + Delta-G solvation = -4.306935 kcal Electronic energy + Delta-G solvation = -25685.203712 eV Core-core repulsion = 21989.982797 eV Total energy + Delta-G solvation = -3695.220915 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.54053 -38.42854 -37.39582 -36.31550 -35.85825 -33.04778 -32.25915 -31.72055 -30.73994 -29.63105 -27.18223 -26.07325 -24.18992 -23.99983 -22.73765 -21.66845 -20.21969 -19.29067 -19.05028 -17.85943 -16.68738 -16.50625 -16.40380 -15.60829 -15.32103 -15.24040 -14.74270 -14.65355 -14.47901 -14.28520 -13.82187 -13.49227 -13.29376 -13.12812 -12.99428 -12.73947 -12.69053 -12.38697 -12.27533 -11.86441 -11.51766 -11.22211 -11.15423 -11.13126 -10.95275 -10.89935 -10.58395 -10.52313 -10.26389 -9.99782 -9.73905 -9.57777 -9.32397 -8.72968 -8.49762 -8.47876 -7.23489 -6.07365 -4.17382 0.56818 1.08223 2.74279 2.82244 2.87222 2.97072 3.20725 3.29606 3.30431 3.70456 3.83469 4.34157 4.47478 4.57554 4.65516 4.77972 4.83034 4.99773 5.05236 5.15377 5.22183 5.25700 5.44711 5.46366 5.54258 5.62549 5.77300 5.85052 5.88958 5.91768 6.06163 6.09937 6.30287 6.35993 6.43083 6.48985 6.61597 7.10046 7.17366 7.26781 7.38671 7.49826 7.57396 7.86657 7.94549 8.06984 8.20320 8.24106 8.92879 9.49139 10.97482 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.012511 B = 0.003295 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.435411 B = 8496.222079 C = 9276.806427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.127 4.127 3 C 0.083 3.917 4 N -0.527 5.527 5 C 0.186 3.814 6 C -0.552 4.552 7 H 0.056 0.944 8 C 0.068 3.932 9 N -0.885 5.885 10 Si 0.885 3.115 11 H -0.274 1.274 12 H -0.283 1.283 13 H -0.283 1.283 14 C 0.034 3.966 15 C 0.118 3.882 16 H 0.115 0.885 17 O -0.538 6.538 18 C 0.027 3.973 19 O -0.293 6.293 20 C 0.184 3.816 21 C -0.213 4.213 22 C -0.049 4.049 23 C -0.166 4.166 24 C -0.033 4.033 25 C -0.067 4.067 26 C 0.260 3.740 27 N -0.415 5.415 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.033 0.967 34 H 0.034 0.966 35 H 0.262 0.738 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.362 0.638 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.139 0.861 42 H 0.132 0.868 43 H 0.133 0.867 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.662 7.580 -10.337 20.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.145 4.145 3 C -0.045 4.045 4 N -0.250 5.250 5 C 0.061 3.939 6 C -0.591 4.591 7 H 0.074 0.926 8 C -0.136 4.136 9 N -0.523 5.523 10 Si 0.713 3.287 11 H -0.199 1.199 12 H -0.209 1.209 13 H -0.209 1.209 14 C -0.095 4.095 15 C 0.058 3.942 16 H 0.132 0.868 17 O -0.341 6.341 18 C -0.049 4.049 19 O -0.204 6.204 20 C 0.134 3.866 21 C -0.232 4.232 22 C -0.068 4.068 23 C -0.184 4.184 24 C -0.054 4.054 25 C -0.071 4.071 26 C -0.055 4.055 27 N -0.090 5.090 28 H 0.112 0.888 29 H 0.106 0.894 30 H 0.120 0.880 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.207 0.793 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.157 0.843 42 H 0.150 0.850 43 H 0.151 0.849 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 15.710 5.402 -8.276 18.560 hybrid contribution -1.163 2.456 -0.829 2.841 sum 14.547 7.857 -9.105 18.875 Atomic orbital electron populations 1.23709 0.96113 1.01106 1.02576 1.22783 0.95384 0.98416 0.97966 1.21126 0.94986 0.95247 0.93099 1.62363 1.14950 1.43589 1.04121 1.19800 0.92982 0.95763 0.85392 1.21697 1.32438 1.06490 0.98434 0.92582 1.24940 0.96269 0.96839 0.95512 1.69955 1.42176 1.37369 1.02792 0.86661 0.80047 0.84063 0.77958 1.19911 1.20883 1.20931 1.22471 0.93257 0.96519 0.97296 1.21963 0.88823 0.81515 1.01886 0.86758 1.86713 1.80963 1.34264 1.32152 1.23868 0.86973 1.01934 0.92129 1.86215 1.29154 1.46327 1.58732 1.19086 0.87090 0.88347 0.92080 1.21281 1.02438 0.96468 1.03028 1.21188 0.92122 0.97132 0.96330 1.20959 0.99898 0.99264 0.98323 1.21016 0.95775 0.91703 0.96858 1.15340 0.97146 0.95434 0.99156 1.25313 0.93953 0.92961 0.93260 1.81225 1.07466 1.10048 1.10306 0.88788 0.89361 0.87954 0.93012 0.92564 0.94931 0.94836 0.92776 0.91953 0.92597 0.79297 0.91459 0.90372 0.84327 0.85049 0.84930 0.84470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.36 14.32 29.01 0.42 -2.94 16 2 C -0.13 -2.25 8.91 -36.03 -0.32 -2.57 16 3 C 0.08 1.52 5.25 -4.97 -0.03 1.50 16 4 N -0.53 -10.60 4.47 -237.51 -1.06 -11.66 16 5 C 0.19 4.64 4.88 -4.98 -0.02 4.61 16 6 C -0.55 -14.35 7.18 -34.44 -0.25 -14.60 16 7 H 0.06 1.42 6.07 -52.49 -0.32 1.11 16 8 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 9 N -0.88 -25.66 13.29 55.43 0.74 -24.92 16 10 Si 0.88 20.71 29.54 -169.99 -5.02 15.69 16 11 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 C 0.03 0.57 4.50 -3.82 -0.02 0.55 16 15 C 0.12 1.93 3.31 -26.73 -0.09 1.84 16 16 H 0.11 2.32 6.88 -51.93 -0.36 1.96 16 17 O -0.54 -8.95 13.18 -40.08 -0.53 -9.48 16 18 C 0.03 0.33 4.37 37.16 0.16 0.50 16 19 O -0.29 -4.27 9.53 -23.69 -0.23 -4.49 16 20 C 0.18 2.19 6.69 -38.71 -0.26 1.94 16 21 C -0.21 -1.91 9.03 -39.48 -0.36 -2.27 16 22 C -0.05 -0.34 10.03 -39.53 -0.40 -0.73 16 23 C -0.17 -1.08 10.02 -39.63 -0.40 -1.48 16 24 C -0.03 -0.27 9.76 -39.18 -0.38 -0.65 16 25 C -0.07 -0.77 5.75 -106.69 -0.61 -1.38 16 26 C 0.26 3.79 14.87 -22.47 -0.33 3.46 16 27 N -0.41 -7.07 18.54 41.84 0.78 -6.30 16 28 H 0.09 1.65 7.84 -52.48 -0.41 1.24 16 29 H 0.09 1.33 8.06 -52.49 -0.42 0.90 16 30 H 0.10 1.74 8.06 -52.49 -0.42 1.31 16 31 H 0.05 1.05 5.82 -51.93 -0.30 0.74 16 32 H 0.06 0.88 7.68 -51.93 -0.40 0.48 16 33 H 0.03 0.90 7.46 -51.93 -0.39 0.51 16 34 H 0.03 0.92 6.81 -51.93 -0.35 0.57 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.06 1.15 6.42 -51.93 -0.33 0.82 16 37 H 0.06 0.76 7.64 -51.93 -0.40 0.37 16 38 H 0.36 4.39 9.05 45.56 0.41 4.80 16 39 H 0.07 0.64 7.66 -51.93 -0.40 0.25 16 40 H 0.08 0.91 7.66 -51.93 -0.40 0.51 16 41 H 0.14 1.05 6.30 -52.49 -0.33 0.72 16 42 H 0.13 0.56 8.06 -52.48 -0.42 0.14 16 43 H 0.13 0.52 8.06 -52.48 -0.42 0.10 16 44 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 376.10 15.07 5.67 5.67 Total: -1.00 -32.64 376.10 -7.86 -40.50 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -5.22 Total: 5.48 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -2.98 Total: -10.49 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: 0.45 Total: -42.88 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -0.75 Total: -13.98 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.64 -7.86 -40.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599430054.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.195 kcal (2) G-P(sol) polarization free energy of solvation -32.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds