Wall clock time and date at job start Tue Mar 31 2020 11:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 120.00232 * 2 1 4 4 N 1.46903 * 109.47193 * 124.99678 * 3 2 1 5 5 C 1.46901 * 110.99955 * 288.24739 * 4 3 2 6 6 C 1.50697 * 109.47181 * 298.83484 * 5 4 3 7 7 H 1.08001 * 120.00310 * 4.45734 * 6 5 4 8 8 C 1.37875 * 119.99754 * 184.44632 * 6 5 4 9 9 N 1.31512 * 120.00019 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99756 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47456 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47274 * 120.00247 * 10 8 6 13 13 H 1.48508 * 109.47161 * 240.00123 * 10 8 6 14 14 C 1.46901 * 110.99702 * 164.29250 * 4 3 2 15 15 C 1.53004 * 109.46896 * 200.14395 * 14 4 3 16 16 H 1.08993 * 109.47216 * 300.78451 * 15 14 4 17 17 O 1.42897 * 109.46761 * 60.78334 * 15 14 4 18 18 C 1.53007 * 109.46813 * 180.78262 * 15 14 4 19 19 O 1.42899 * 109.46405 * 175.00145 * 18 15 14 20 20 C 1.35711 * 116.99419 * 179.97438 * 19 18 15 21 21 C 1.38646 * 120.15002 * 0.02562 * 20 19 18 22 22 C 1.38098 * 120.09267 * 179.97438 * 21 20 19 23 23 C 1.38520 * 120.39166 * 0.02562 * 22 21 20 24 24 C 1.37818 * 120.29599 * 0.02562 * 23 22 21 25 25 C 1.39714 * 119.90009 * 359.65682 * 24 23 22 26 26 C 1.43205 * 120.19475 * 180.32035 * 25 24 23 27 27 N 9.81717 * 146.73354 * 70.84242 * 2 1 3 28 28 H 1.08007 * 119.99571 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.00319 * 179.97438 * 1 2 3 30 30 H 1.07997 * 119.99699 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.47066 * 4.99776 * 3 2 1 32 32 H 1.09003 * 109.47083 * 244.99715 * 3 2 1 33 33 H 1.09000 * 109.47030 * 58.84021 * 5 4 3 34 34 H 1.09005 * 109.46781 * 178.83433 * 5 4 3 35 35 H 0.97007 * 120.00161 * 179.97438 * 9 8 6 36 36 H 1.08998 * 109.46949 * 80.14789 * 14 4 3 37 37 H 1.08994 * 109.47533 * 320.14534 * 14 4 3 38 38 H 0.96699 * 114.00166 * 59.99919 * 17 15 14 39 39 H 1.09000 * 109.46859 * 294.99741 * 18 15 14 40 40 H 1.09001 * 109.47091 * 55.00324 * 18 15 14 41 41 H 1.07998 * 119.95028 * 0.02562 * 21 20 19 42 42 H 1.08005 * 119.80610 * 179.97438 * 22 21 20 43 43 H 1.08004 * 119.85174 * 179.97438 * 23 22 21 44 44 H 1.07997 * 120.05035 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3319 1.1346 5 6 2.2752 1.4834 2.4054 6 6 1.5186 2.7867 2.4014 7 1 1.5097 3.4032 1.5148 8 6 0.8375 3.1918 3.5297 9 7 0.8486 2.4411 4.6095 10 14 -0.1010 4.8069 3.5245 11 1 0.0433 5.4590 2.1982 12 1 -1.5377 4.5455 3.7944 13 1 0.4458 5.7005 4.5770 14 6 3.9978 2.3936 0.9676 15 6 5.2103 2.0945 1.8516 16 1 4.8951 2.0371 2.8934 17 8 5.7895 0.8483 1.4597 18 6 6.2450 3.2104 1.6925 19 8 7.3244 2.9922 2.6032 20 6 8.3345 3.8984 2.5897 21 6 8.2908 4.9770 1.7196 22 6 9.3191 5.8988 1.7072 23 6 10.4002 5.7541 2.5610 24 6 10.4606 4.6875 3.4317 25 6 9.4240 3.7513 3.4592 26 6 9.4770 2.6444 4.3662 27 7 9.5184 1.7672 5.0868 28 1 -0.5400 0.9354 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8499 -0.9353 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6214 1.4025 -0.9314 33 1 1.5749 0.6570 2.5266 34 1 2.9879 1.4796 3.2302 35 1 0.3697 2.7263 5.4034 36 1 3.5642 3.3508 1.2574 37 1 4.3106 2.4374 -0.0755 38 1 6.0932 0.8271 0.5419 39 1 6.6256 3.2099 0.6711 40 1 5.7782 4.1719 1.9060 41 1 7.4510 5.0968 1.0511 42 1 9.2805 6.7370 1.0272 43 1 11.1998 6.4800 2.5437 44 1 11.3052 4.5789 4.0959 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599430054.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:17 Heat of formation + Delta-G solvation = -27.504945 kcal Electronic energy + Delta-G solvation = -25686.209653 eV Core-core repulsion = 21989.982797 eV Total energy + Delta-G solvation = -3696.226856 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.37451 -39.64970 -38.55713 -37.43434 -37.19234 -34.84373 -33.92438 -32.50044 -31.68013 -30.65099 -29.07973 -27.28392 -25.85517 -24.89718 -23.88043 -22.65709 -21.76291 -20.56006 -20.15014 -18.79284 -18.38870 -17.69343 -17.56645 -16.91666 -16.53558 -16.31305 -15.97447 -15.89638 -15.79757 -15.36524 -15.10091 -14.74024 -14.57337 -14.44915 -14.13215 -14.08591 -13.97258 -13.72041 -13.18226 -13.09281 -12.90968 -12.61767 -12.51436 -12.45534 -12.29966 -12.26112 -12.10989 -11.96980 -11.74635 -11.71262 -11.53177 -10.91264 -10.61053 -10.13274 -10.00315 -9.25234 -8.95578 -8.12985 -6.33683 -0.15914 0.43151 1.35523 1.37125 1.47844 1.50181 1.64458 1.97312 1.99616 2.36678 2.89520 2.94466 3.11711 3.33671 3.58806 3.81925 3.92514 3.94703 4.10112 4.20584 4.24109 4.31522 4.40531 4.42960 4.46038 4.48921 4.54657 4.68051 4.89355 4.91383 4.99349 5.10864 5.14835 5.23363 5.29013 5.36240 5.37995 5.51597 5.76326 5.78466 5.82660 5.91666 6.08163 6.25562 6.31205 6.51007 6.57464 6.88120 7.01879 7.37982 8.89043 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.012511 B = 0.003295 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.435411 B = 8496.222079 C = 9276.806427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.142 4.142 3 C 0.084 3.916 4 N -0.532 5.532 5 C 0.206 3.794 6 C -0.546 4.546 7 H 0.066 0.934 8 C 0.010 3.990 9 N -0.929 5.929 10 Si 0.954 3.046 11 H -0.258 1.258 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.037 3.963 15 C 0.124 3.876 16 H 0.058 0.942 17 O -0.560 6.560 18 C 0.037 3.963 19 O -0.331 6.331 20 C 0.159 3.841 21 C -0.216 4.216 22 C -0.036 4.036 23 C -0.154 4.154 24 C -0.028 4.028 25 C -0.098 4.098 26 C 0.279 3.721 27 N -0.479 5.479 28 H 0.086 0.914 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.032 0.968 32 H 0.093 0.907 33 H -0.003 1.003 34 H -0.005 1.005 35 H 0.262 0.738 36 H 0.047 0.953 37 H 0.102 0.898 38 H 0.383 0.617 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.155 0.845 42 H 0.168 0.832 43 H 0.170 0.830 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.993 10.853 -13.530 24.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.161 4.161 3 C -0.043 4.043 4 N -0.255 5.255 5 C 0.079 3.921 6 C -0.585 4.585 7 H 0.084 0.916 8 C -0.189 4.189 9 N -0.569 5.569 10 Si 0.780 3.220 11 H -0.181 1.181 12 H -0.209 1.209 13 H -0.208 1.208 14 C -0.091 4.091 15 C 0.064 3.936 16 H 0.076 0.924 17 O -0.366 6.366 18 C -0.038 4.038 19 O -0.244 6.244 20 C 0.110 3.890 21 C -0.234 4.234 22 C -0.055 4.055 23 C -0.171 4.171 24 C -0.048 4.048 25 C -0.102 4.102 26 C -0.035 4.035 27 N -0.156 5.156 28 H 0.104 0.896 29 H 0.126 0.874 30 H 0.127 0.873 31 H 0.051 0.949 32 H 0.111 0.889 33 H 0.015 0.985 34 H 0.013 0.987 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.120 0.880 38 H 0.231 0.769 39 H 0.125 0.875 40 H 0.104 0.896 41 H 0.172 0.828 42 H 0.186 0.814 43 H 0.187 0.813 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 17.063 8.687 -11.512 22.341 hybrid contribution -1.479 1.471 0.081 2.087 sum 15.584 10.157 -11.431 21.833 Atomic orbital electron populations 1.23859 0.96094 1.01727 1.01668 1.22903 0.95788 0.98599 0.98801 1.21197 0.94738 0.94796 0.93590 1.62242 1.15237 1.45269 1.02737 1.19312 0.91495 0.94260 0.86993 1.21957 1.31511 1.06589 0.98484 0.91619 1.25835 0.97456 1.00447 0.95177 1.70111 1.43610 1.39589 1.03614 0.85561 0.78214 0.79684 0.78581 1.18125 1.20923 1.20776 1.22537 0.92204 0.94437 0.99937 1.21658 0.90238 0.82990 0.98746 0.92383 1.86661 1.81115 1.34718 1.34137 1.23708 0.86094 1.00094 0.93936 1.86140 1.30259 1.48086 1.59880 1.19361 0.86662 0.89321 0.93657 1.21526 1.03716 0.95723 1.02458 1.21679 0.90855 0.96986 0.95971 1.21428 1.00487 0.98646 0.96579 1.21329 0.95105 0.91110 0.97304 1.15692 0.98994 0.95823 0.99719 1.26006 0.92181 0.92753 0.92529 1.81210 1.09663 1.12103 1.12657 0.89583 0.87389 0.87267 0.94942 0.88939 0.98467 0.98667 0.92896 0.93455 0.88006 0.76855 0.87477 0.89607 0.82765 0.81441 0.81301 0.82583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.56 14.32 67.78 0.97 -5.59 16 2 C -0.14 -4.97 8.91 25.65 0.23 -4.74 16 3 C 0.08 2.98 5.25 85.56 0.45 3.43 16 4 N -0.53 -21.58 4.47 -905.35 -4.04 -25.62 16 5 C 0.21 10.80 4.88 85.56 0.42 11.21 16 6 C -0.55 -29.02 7.18 25.60 0.18 -28.84 16 7 H 0.07 3.31 6.07 -2.91 -0.02 3.29 16 8 C 0.01 0.55 5.46 84.65 0.46 1.01 16 9 N -0.93 -56.11 13.29 21.45 0.28 -55.82 16 10 Si 0.95 42.83 29.54 68.60 2.03 44.86 16 11 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 12 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 13 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 14 C 0.04 1.23 4.50 86.30 0.39 1.62 16 15 C 0.12 4.14 3.31 30.60 0.10 4.25 16 16 H 0.06 2.59 6.88 -2.39 -0.02 2.57 16 17 O -0.56 -18.86 13.18 -144.34 -1.90 -20.77 16 18 C 0.04 0.89 4.37 71.98 0.31 1.21 16 19 O -0.33 -9.83 9.53 -85.68 -0.82 -10.65 16 20 C 0.16 3.66 6.69 22.84 0.15 3.81 16 21 C -0.22 -3.19 9.03 22.33 0.20 -2.99 16 22 C -0.04 -0.33 10.03 22.30 0.22 -0.10 16 23 C -0.15 -1.30 10.02 22.24 0.22 -1.08 16 24 C -0.03 -0.39 9.76 22.53 0.22 -0.17 16 25 C -0.10 -2.23 5.75 -21.21 -0.12 -2.35 16 26 C 0.28 8.57 14.87 88.33 1.31 9.88 16 27 N -0.48 -17.55 18.54 19.01 0.35 -17.20 16 28 H 0.09 3.00 7.84 -2.91 -0.02 2.98 16 29 H 0.11 3.13 8.06 -2.91 -0.02 3.11 16 30 H 0.11 3.64 8.06 -2.91 -0.02 3.62 16 31 H 0.03 1.28 5.82 -2.39 -0.01 1.27 16 32 H 0.09 2.61 7.68 -2.39 -0.02 2.59 16 33 H 0.00 -0.17 7.46 -2.39 -0.02 -0.18 16 34 H 0.00 -0.29 6.81 -2.38 -0.02 -0.30 16 35 H 0.26 15.00 8.31 -92.70 -0.77 14.23 16 36 H 0.05 1.71 6.42 -2.39 -0.02 1.70 16 37 H 0.10 2.41 7.64 -2.39 -0.02 2.39 16 38 H 0.38 8.74 9.05 -74.06 -0.67 8.07 16 39 H 0.11 1.70 7.66 -2.39 -0.02 1.68 16 40 H 0.09 1.90 7.66 -2.39 -0.02 1.88 16 41 H 0.15 1.72 6.30 -2.91 -0.02 1.70 16 42 H 0.17 0.35 8.06 -2.91 -0.02 0.33 16 43 H 0.17 0.28 8.06 -2.91 -0.02 0.26 16 44 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 Total: -1.00 -77.81 376.10 1.98 -75.83 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.35 Total: 18.81 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: 5.73 Total: -9.43 kcal Atomic # 7 Polarization: -95.24 SS G_CDS: -3.41 Total: -98.65 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -2.72 Total: -31.42 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -77.81 1.98 -75.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599430054.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.329 kcal (2) G-P(sol) polarization free energy of solvation -77.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds