Wall clock time and date at job start Tue Mar 31 2020 11:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47115 * 2 1 4 4 N 1.46509 * 109.46699 * 119.99631 * 2 1 3 5 5 C 1.46764 * 124.34669 * 120.00433 * 4 2 1 6 6 C 1.54479 * 105.47116 * 162.98292 * 5 4 2 7 7 C 1.54630 * 101.76603 * 25.41211 * 6 5 4 8 8 H 1.09001 * 110.48697 * 94.01407 * 7 6 5 9 9 N 1.46501 * 110.48963 * 216.52384 * 7 6 5 10 10 C 1.34773 * 119.99965 * 205.00515 * 9 7 6 11 11 O 1.21602 * 120.00446 * 359.97438 * 10 9 7 12 12 C 1.47439 * 119.99676 * 180.02562 * 10 9 7 13 13 C 1.39224 * 120.28232 * 355.69748 * 12 10 9 14 14 C 1.38224 * 120.09293 * 180.02562 * 13 12 10 15 15 C 1.38829 * 120.67224 * 0.04505 * 14 13 12 16 16 C 1.37592 * 120.57053 * 359.97438 * 15 14 13 17 17 C 1.40701 * 119.88595 * 0.02562 * 16 15 14 18 18 C 1.40892 * 120.32995 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99966 * 215.46150 * 18 17 16 20 20 C 1.40269 * 119.99948 * 35.46624 * 18 17 16 21 21 N 1.30626 * 120.00049 * 9.15195 * 20 18 17 22 22 Si 1.86804 * 119.99882 * 189.15157 * 20 18 17 23 23 H 1.48495 * 109.47251 * 59.99883 * 22 20 18 24 24 H 1.48504 * 109.47104 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47029 * 299.99851 * 22 20 18 26 26 C 1.34415 * 124.35053 * 300.00202 * 4 2 1 27 27 O 1.21285 * 124.94095 * 0.43893 * 26 4 2 28 28 H 1.08995 * 109.47498 * 300.00756 * 1 2 3 29 29 H 1.09004 * 109.46765 * 60.00564 * 1 2 3 30 30 H 1.09001 * 109.47276 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47498 * 239.99244 * 2 1 3 32 32 H 1.09004 * 109.47288 * 59.99826 * 3 2 1 33 33 H 1.09000 * 109.47118 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47191 * 299.99725 * 3 2 1 35 35 H 1.08990 * 110.25004 * 43.98128 * 5 4 2 36 36 H 1.09000 * 110.24475 * 281.97849 * 5 4 2 37 37 H 1.08998 * 110.96952 * 267.29501 * 6 5 4 38 38 H 1.09000 * 110.96957 * 143.53105 * 6 5 4 39 39 H 0.96999 * 119.99400 * 24.99730 * 9 7 6 40 40 H 1.08001 * 119.95629 * 0.02562 * 13 12 10 41 41 H 1.07994 * 119.66361 * 180.02562 * 14 13 12 42 42 H 1.07997 * 119.71301 * 180.02562 * 15 14 13 43 43 H 1.08003 * 120.06011 * 179.72262 * 16 15 14 44 44 H 0.97001 * 119.99909 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 2.8655 -1.8887 1.1729 6 6 3.4721 -1.9921 2.5899 7 6 2.4201 -1.2415 3.4388 8 1 1.6979 -1.9420 3.8581 9 7 3.0720 -0.4789 4.5065 10 6 2.3920 -0.1756 5.6297 11 8 1.2370 -0.5343 5.7570 12 6 3.0479 0.5924 6.7039 13 6 4.3949 0.9299 6.6036 14 6 5.0061 1.6495 7.6132 15 6 4.2902 2.0430 8.7358 16 6 2.9579 1.7239 8.8634 17 6 2.3120 0.9921 7.8500 18 6 0.9482 0.6598 7.9714 19 1 0.5867 -0.2846 7.5921 20 6 0.0600 1.5557 8.5846 21 7 0.4535 2.7653 8.8815 22 14 -1.6858 1.0187 8.9766 23 1 -1.6506 -0.1418 9.9023 24 1 -2.4165 2.1411 9.6182 25 1 -2.3777 0.6300 7.7215 26 6 1.7478 -0.3082 2.4562 27 8 1.0638 0.6459 2.7610 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 3.6563 -1.7771 0.4313 36 1 2.2645 -2.7715 0.9547 37 1 4.4399 -1.4929 2.6372 38 1 3.5559 -3.0327 2.9033 39 1 3.9932 -0.1926 4.4048 40 1 4.9631 0.6292 5.7358 41 1 6.0512 1.9080 7.5281 42 1 4.7832 2.6051 9.5151 43 1 2.4101 2.0303 9.7423 44 1 -0.1609 3.3849 9.3052 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601179085.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:31 Heat of formation + Delta-G solvation = -45.548842 kcal Electronic energy + Delta-G solvation = -26803.203219 eV Core-core repulsion = 23106.193920 eV Total energy + Delta-G solvation = -3697.009299 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.63084 -38.65646 -36.75337 -36.23021 -35.24890 -33.73182 -32.83531 -30.10851 -29.67773 -28.93826 -27.24693 -26.88213 -25.26974 -22.76312 -22.32254 -21.61670 -20.75623 -19.49130 -18.74270 -17.56182 -16.95758 -16.44213 -16.01213 -15.47884 -15.16319 -14.70370 -14.35369 -14.16341 -13.84402 -13.69527 -13.63832 -13.32318 -13.06968 -12.88439 -12.75934 -12.64155 -12.19132 -12.10602 -11.96186 -11.87248 -11.56155 -11.32977 -11.25897 -11.09618 -11.04480 -10.97504 -10.62342 -10.46004 -10.05923 -9.72782 -9.63331 -9.18821 -8.68390 -8.36933 -8.23839 -7.54504 -7.28340 -6.73522 -4.32919 2.40350 2.76512 2.87850 2.96677 3.14598 3.20846 3.31314 3.91727 4.04668 4.14555 4.42617 4.48606 4.75803 4.79739 4.82659 4.98315 5.01691 5.09317 5.27483 5.48253 5.54912 5.58926 5.66274 5.67575 5.73448 5.80060 5.85647 6.00945 6.17158 6.20715 6.21990 6.32567 6.63735 6.68698 6.98644 7.01541 7.17418 7.23279 7.28870 7.50610 7.66047 7.91808 8.03222 8.22881 8.36497 8.46011 8.73338 8.88560 8.96277 9.46420 10.22555 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013449 B = 0.004293 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.385067 B = 6521.224142 C = 7644.197024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.156 3.844 3 C -0.168 4.168 4 N -0.626 5.626 5 C 0.108 3.892 6 C -0.138 4.138 7 C 0.121 3.879 8 H 0.120 0.880 9 N -0.731 5.731 10 C 0.569 3.431 11 O -0.528 6.528 12 C -0.258 4.258 13 C -0.057 4.057 14 C -0.246 4.246 15 C -0.096 4.096 16 C -0.146 4.146 17 C 0.147 3.853 18 C -0.419 4.419 19 H 0.109 0.891 20 C 0.070 3.930 21 N -0.793 5.793 22 Si 0.916 3.084 23 H -0.263 1.263 24 H -0.280 1.280 25 H -0.262 1.262 26 C 0.503 3.497 27 O -0.497 6.497 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.394 0.606 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.115 0.885 44 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.812 -7.714 -15.147 17.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.053 3.947 3 C -0.226 4.226 4 N -0.364 5.364 5 C -0.016 4.016 6 C -0.177 4.177 7 C 0.011 3.989 8 H 0.138 0.862 9 N -0.387 5.387 10 C 0.364 3.636 11 O -0.405 6.405 12 C -0.263 4.263 13 C -0.076 4.076 14 C -0.265 4.265 15 C -0.115 4.115 16 C -0.165 4.165 17 C 0.143 3.857 18 C -0.447 4.447 19 H 0.127 0.873 20 C -0.148 4.148 21 N -0.418 5.418 22 Si 0.740 3.260 23 H -0.187 1.187 24 H -0.205 1.205 25 H -0.186 1.186 26 C 0.288 3.712 27 O -0.368 6.368 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.105 0.895 38 H 0.115 0.885 39 H 0.230 0.770 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.133 0.867 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.445 -7.176 -14.815 17.051 hybrid contribution -0.179 0.160 -0.114 0.266 sum 4.265 -7.016 -14.929 17.038 Atomic orbital electron populations 1.22192 0.94879 1.02267 1.03369 1.20867 0.94426 0.93040 0.86336 1.22186 1.01103 0.95993 1.03350 1.48482 1.52517 1.29281 1.06157 1.22008 0.93899 0.87908 0.97781 1.22906 0.98763 1.02413 0.93578 1.21361 0.96178 0.93427 0.87912 0.86239 1.45824 1.16036 1.59553 1.17242 1.18413 0.85631 0.78766 0.80802 1.90657 1.16876 1.53229 1.79712 1.19404 0.94879 1.14925 0.97120 1.20622 0.93608 0.96827 0.96516 1.20263 0.98439 1.09822 0.97993 1.20784 0.94939 0.99028 0.96784 1.21323 0.92800 1.02792 0.99589 1.17463 0.92895 0.87403 0.87933 1.20255 0.92309 1.04135 1.28025 0.87308 1.26132 1.01800 0.94303 0.92607 1.69711 1.37640 1.04570 1.29882 0.86222 0.81040 0.78970 0.79720 1.18746 1.20492 1.18597 1.21499 0.80665 0.85561 0.83458 1.90744 1.37217 1.27924 1.80933 0.90742 0.91726 0.92607 0.89858 0.90793 0.92627 0.91709 0.90493 0.91107 0.89529 0.88545 0.77050 0.89395 0.89144 0.89114 0.86675 0.90710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 9.20 37.16 0.34 -1.60 16 2 C 0.16 1.67 3.48 -67.93 -0.24 1.44 16 3 C -0.17 -1.93 9.20 37.16 0.34 -1.58 16 4 N -0.63 -7.67 2.83 -164.85 -0.47 -8.14 16 5 C 0.11 0.88 7.30 -3.12 -0.02 0.86 16 6 C -0.14 -1.27 6.87 -25.10 -0.17 -1.44 16 7 C 0.12 1.86 3.28 -67.94 -0.22 1.63 16 8 H 0.12 1.99 7.55 -51.93 -0.39 1.60 16 9 N -0.73 -13.29 5.08 -54.89 -0.28 -13.56 16 10 C 0.57 13.65 7.73 -12.51 -0.10 13.56 16 11 O -0.53 -14.42 13.17 5.28 0.07 -14.35 16 12 C -0.26 -6.50 5.92 -104.36 -0.62 -7.12 16 13 C -0.06 -1.24 9.52 -39.22 -0.37 -1.61 16 14 C -0.25 -5.31 10.03 -39.37 -0.39 -5.71 16 15 C -0.10 -2.22 10.01 -39.60 -0.40 -2.62 16 16 C -0.15 -3.79 8.61 -38.89 -0.33 -4.13 16 17 C 0.15 4.07 5.49 -106.54 -0.58 3.48 16 18 C -0.42 -11.93 7.77 -37.81 -0.29 -12.23 16 19 H 0.11 3.20 5.74 -52.48 -0.30 2.90 16 20 C 0.07 1.87 5.25 -17.30 -0.09 1.78 16 21 N -0.79 -21.38 11.24 55.56 0.62 -20.75 16 22 Si 0.92 20.54 29.57 -169.99 -5.03 15.51 16 23 H -0.26 -5.70 7.11 56.52 0.40 -5.29 16 24 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 25 H -0.26 -6.07 7.11 56.52 0.40 -5.67 16 26 C 0.50 8.57 7.05 -10.86 -0.08 8.50 16 27 O -0.50 -11.06 15.11 5.55 0.08 -10.97 16 28 H 0.07 1.13 6.77 -51.93 -0.35 0.78 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.65 8.07 -51.93 -0.42 0.23 16 32 H 0.07 1.13 6.80 -51.93 -0.35 0.77 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.09 0.71 7.82 -51.93 -0.41 0.30 16 38 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.39 6.12 6.47 -40.82 -0.26 5.85 16 40 H 0.09 1.56 6.42 -52.49 -0.34 1.22 16 41 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 42 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 43 H 0.12 3.04 6.71 -52.48 -0.35 2.69 16 44 H 0.28 6.94 8.29 -40.82 -0.34 6.60 16 LS Contribution 358.78 15.07 5.41 5.41 Total: -1.00 -34.54 358.78 -8.93 -43.47 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -6.12 Total: 10.17 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -3.23 Total: -6.77 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: -0.12 Total: -42.46 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: 0.15 Total: -25.33 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.03 Total: 15.51 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.54 -8.93 -43.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601179085.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.079 kcal (2) G-P(sol) polarization free energy of solvation -34.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds