Wall clock time and date at job start Tue Mar 31 2020 11:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47115 * 2 1 4 4 N 1.46509 * 109.46699 * 119.99631 * 2 1 3 5 5 C 1.46764 * 124.34669 * 120.00433 * 4 2 1 6 6 C 1.54479 * 105.47116 * 162.98292 * 5 4 2 7 7 C 1.54630 * 101.76603 * 25.41211 * 6 5 4 8 8 H 1.09001 * 110.48697 * 94.01407 * 7 6 5 9 9 N 1.46501 * 110.48963 * 216.52384 * 7 6 5 10 10 C 1.34773 * 119.99965 * 205.00515 * 9 7 6 11 11 O 1.21602 * 120.00446 * 359.97438 * 10 9 7 12 12 C 1.47439 * 119.99676 * 180.02562 * 10 9 7 13 13 C 1.39224 * 120.28232 * 355.69748 * 12 10 9 14 14 C 1.38224 * 120.09293 * 180.02562 * 13 12 10 15 15 C 1.38829 * 120.67224 * 0.04505 * 14 13 12 16 16 C 1.37592 * 120.57053 * 359.97438 * 15 14 13 17 17 C 1.40701 * 119.88595 * 0.02562 * 16 15 14 18 18 C 1.40892 * 120.32995 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99966 * 215.46150 * 18 17 16 20 20 C 1.40269 * 119.99948 * 35.46624 * 18 17 16 21 21 N 1.30626 * 120.00049 * 9.15195 * 20 18 17 22 22 Si 1.86804 * 119.99882 * 189.15157 * 20 18 17 23 23 H 1.48495 * 109.47251 * 59.99883 * 22 20 18 24 24 H 1.48504 * 109.47104 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47029 * 299.99851 * 22 20 18 26 26 C 1.34415 * 124.35053 * 300.00202 * 4 2 1 27 27 O 1.21285 * 124.94095 * 0.43893 * 26 4 2 28 28 H 1.08995 * 109.47498 * 300.00756 * 1 2 3 29 29 H 1.09004 * 109.46765 * 60.00564 * 1 2 3 30 30 H 1.09001 * 109.47276 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47498 * 239.99244 * 2 1 3 32 32 H 1.09004 * 109.47288 * 59.99826 * 3 2 1 33 33 H 1.09000 * 109.47118 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47191 * 299.99725 * 3 2 1 35 35 H 1.08990 * 110.25004 * 43.98128 * 5 4 2 36 36 H 1.09000 * 110.24475 * 281.97849 * 5 4 2 37 37 H 1.08998 * 110.96952 * 267.29501 * 6 5 4 38 38 H 1.09000 * 110.96957 * 143.53105 * 6 5 4 39 39 H 0.96999 * 119.99400 * 24.99730 * 9 7 6 40 40 H 1.08001 * 119.95629 * 0.02562 * 13 12 10 41 41 H 1.07994 * 119.66361 * 180.02562 * 14 13 12 42 42 H 1.07997 * 119.71301 * 180.02562 * 15 14 13 43 43 H 1.08003 * 120.06011 * 179.72262 * 16 15 14 44 44 H 0.97001 * 119.99909 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 2.8655 -1.8887 1.1729 6 6 3.4721 -1.9921 2.5899 7 6 2.4201 -1.2415 3.4388 8 1 1.6979 -1.9420 3.8581 9 7 3.0720 -0.4789 4.5065 10 6 2.3920 -0.1756 5.6297 11 8 1.2370 -0.5343 5.7570 12 6 3.0479 0.5924 6.7039 13 6 4.3949 0.9299 6.6036 14 6 5.0061 1.6495 7.6132 15 6 4.2902 2.0430 8.7358 16 6 2.9579 1.7239 8.8634 17 6 2.3120 0.9921 7.8500 18 6 0.9482 0.6598 7.9714 19 1 0.5867 -0.2846 7.5921 20 6 0.0600 1.5557 8.5846 21 7 0.4535 2.7653 8.8815 22 14 -1.6858 1.0187 8.9766 23 1 -1.6506 -0.1418 9.9023 24 1 -2.4165 2.1411 9.6182 25 1 -2.3777 0.6300 7.7215 26 6 1.7478 -0.3082 2.4562 27 8 1.0638 0.6459 2.7610 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 3.6563 -1.7771 0.4313 36 1 2.2645 -2.7715 0.9547 37 1 4.4399 -1.4929 2.6372 38 1 3.5559 -3.0327 2.9033 39 1 3.9932 -0.1926 4.4048 40 1 4.9631 0.6292 5.7358 41 1 6.0512 1.9080 7.5281 42 1 4.7832 2.6051 9.5151 43 1 2.4101 2.0303 9.7423 44 1 -0.1609 3.3849 9.3052 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601179085.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:30 Heat of formation + Delta-G solvation = -69.547409 kcal Electronic energy + Delta-G solvation = -26804.243875 eV Core-core repulsion = 23106.193920 eV Total energy + Delta-G solvation = -3698.049955 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.82550 -40.40164 -38.54745 -37.49822 -36.49699 -35.60082 -34.28283 -31.87471 -31.46825 -30.11148 -28.17052 -28.11282 -27.14704 -24.30302 -23.32566 -23.00639 -22.46110 -21.21090 -19.93346 -19.39556 -18.35498 -17.68477 -17.45158 -17.08814 -16.65765 -16.03655 -15.93483 -15.72519 -15.30175 -15.00602 -14.90761 -14.63092 -14.58547 -14.50669 -14.11234 -13.92092 -13.68721 -13.45972 -13.06100 -12.96527 -12.87540 -12.84722 -12.75432 -12.46193 -12.33152 -12.27286 -12.20151 -11.99468 -11.89333 -11.48698 -11.17953 -11.11738 -10.26125 -9.80615 -9.67184 -9.39394 -9.21379 -8.69321 -6.38042 0.51254 1.01122 1.28249 1.40459 1.47442 1.48457 1.94972 2.18825 2.38258 2.54039 2.78779 3.43328 3.52602 3.72498 3.91881 4.02274 4.06090 4.10633 4.28412 4.32291 4.35913 4.55555 4.62882 4.65595 4.66726 4.79982 4.83754 4.85600 4.90724 5.00537 5.07351 5.11487 5.21903 5.23733 5.26792 5.33253 5.57662 5.61461 5.76310 5.81225 6.04404 6.10131 6.16408 6.34902 6.62743 6.77741 6.90830 7.00090 7.24224 7.66939 8.28963 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013449 B = 0.004293 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.385067 B = 6521.224142 C = 7644.197024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.150 3.850 3 C -0.164 4.164 4 N -0.615 5.615 5 C 0.103 3.897 6 C -0.120 4.120 7 C 0.108 3.892 8 H 0.097 0.903 9 N -0.711 5.711 10 C 0.563 3.437 11 O -0.574 6.574 12 C -0.280 4.280 13 C -0.054 4.054 14 C -0.233 4.233 15 C -0.092 4.092 16 C -0.176 4.176 17 C 0.115 3.885 18 C -0.464 4.464 19 H 0.084 0.916 20 C 0.030 3.970 21 N -0.825 5.825 22 Si 0.976 3.024 23 H -0.251 1.251 24 H -0.257 1.257 25 H -0.280 1.280 26 C 0.490 3.510 27 O -0.567 6.567 28 H 0.024 0.976 29 H 0.088 0.912 30 H 0.062 0.938 31 H 0.133 0.867 32 H 0.024 0.976 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.118 0.882 36 H 0.094 0.906 37 H 0.106 0.894 38 H 0.124 0.876 39 H 0.409 0.591 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.122 0.878 43 H 0.098 0.902 44 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.245 -9.098 -18.074 22.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.048 3.952 3 C -0.222 4.222 4 N -0.350 5.350 5 C -0.018 4.018 6 C -0.158 4.158 7 C -0.001 4.001 8 H 0.115 0.885 9 N -0.366 5.366 10 C 0.356 3.644 11 O -0.454 6.454 12 C -0.285 4.285 13 C -0.072 4.072 14 C -0.252 4.252 15 C -0.111 4.111 16 C -0.195 4.195 17 C 0.111 3.889 18 C -0.493 4.493 19 H 0.102 0.898 20 C -0.184 4.184 21 N -0.452 5.452 22 Si 0.798 3.202 23 H -0.175 1.175 24 H -0.181 1.181 25 H -0.206 1.206 26 C 0.276 3.724 27 O -0.444 6.444 28 H 0.044 0.956 29 H 0.106 0.894 30 H 0.081 0.919 31 H 0.151 0.849 32 H 0.043 0.957 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.136 0.864 36 H 0.112 0.888 37 H 0.125 0.875 38 H 0.142 0.858 39 H 0.247 0.753 40 H 0.153 0.847 41 H 0.154 0.846 42 H 0.140 0.860 43 H 0.116 0.884 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.964 -8.601 -17.804 21.317 hybrid contribution -1.019 0.551 0.605 1.307 sum 6.945 -8.050 -17.200 20.220 Atomic orbital electron populations 1.22170 0.95943 1.02278 1.02100 1.21159 0.93734 0.93111 0.87155 1.22149 1.01660 0.96380 1.02040 1.48610 1.51589 1.29862 1.04936 1.22433 0.94646 0.86740 0.98004 1.22996 0.97335 1.03123 0.92364 1.21677 0.98031 0.92951 0.87420 0.88501 1.45508 1.16279 1.58599 1.16249 1.18483 0.85233 0.78459 0.82216 1.90632 1.18893 1.55022 1.80886 1.19858 0.96650 1.14925 0.97029 1.21075 0.92257 0.95701 0.98183 1.20827 1.00359 1.07547 0.96506 1.21194 0.93733 0.97987 0.98152 1.21265 0.94369 1.04681 0.99212 1.17863 0.93236 0.88459 0.89302 1.20210 0.93764 1.04352 1.30974 0.89812 1.26807 1.05176 0.94169 0.92276 1.69737 1.39005 1.05159 1.31266 0.85358 0.76510 0.79551 0.78830 1.17528 1.18052 1.20590 1.21823 0.80170 0.84926 0.85520 1.90716 1.40320 1.31046 1.82353 0.95639 0.89351 0.91922 0.84888 0.95665 0.91533 0.89452 0.86385 0.88816 0.87525 0.85760 0.75268 0.84716 0.84577 0.86034 0.88437 0.90106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.73 9.20 71.98 0.66 -3.07 16 2 C 0.15 2.83 3.48 44.99 0.16 2.99 16 3 C -0.16 -3.54 9.20 71.98 0.66 -2.88 16 4 N -0.61 -13.66 2.83 -794.06 -2.25 -15.91 16 5 C 0.10 1.17 7.30 86.83 0.63 1.81 16 6 C -0.12 -1.70 6.87 31.65 0.22 -1.49 16 7 C 0.11 3.28 3.28 44.98 0.15 3.43 16 8 H 0.10 3.37 7.55 -2.39 -0.02 3.35 16 9 N -0.71 -25.70 5.08 -445.83 -2.26 -27.97 16 10 C 0.56 28.14 7.73 86.67 0.67 28.81 16 11 O -0.57 -33.86 13.17 -4.04 -0.05 -33.91 16 12 C -0.28 -14.43 5.92 -19.70 -0.12 -14.55 16 13 C -0.05 -2.21 9.52 22.50 0.21 -2.00 16 14 C -0.23 -9.30 10.03 22.41 0.22 -9.08 16 15 C -0.09 -4.12 10.01 22.26 0.22 -3.89 16 16 C -0.18 -9.47 8.61 22.72 0.20 -9.28 16 17 C 0.12 6.71 5.49 -21.11 -0.12 6.59 16 18 C -0.46 -28.55 7.77 23.41 0.18 -28.37 16 19 H 0.08 5.42 5.74 -2.91 -0.02 5.40 16 20 C 0.03 1.72 5.25 85.37 0.45 2.17 16 21 N -0.83 -47.14 11.24 21.88 0.25 -46.89 16 22 Si 0.98 44.97 29.57 68.60 2.03 47.00 16 23 H -0.25 -10.94 7.11 99.48 0.71 -10.23 16 24 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 25 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 26 C 0.49 16.98 7.05 87.90 0.62 17.60 16 27 O -0.57 -27.19 15.11 -3.04 -0.05 -27.23 16 28 H 0.02 0.82 6.77 -2.39 -0.02 0.80 16 29 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.13 1.31 8.07 -2.39 -0.02 1.30 16 32 H 0.02 0.79 6.80 -2.39 -0.02 0.77 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.12 0.54 8.14 -2.39 -0.02 0.53 16 36 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.11 1.15 7.82 -2.39 -0.02 1.13 16 38 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.41 11.77 6.47 -92.71 -0.60 11.17 16 40 H 0.14 4.19 6.42 -2.91 -0.02 4.17 16 41 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 42 H 0.12 4.61 8.06 -2.91 -0.02 4.58 16 43 H 0.10 5.47 6.71 -2.91 -0.02 5.45 16 44 H 0.29 14.93 8.29 -92.71 -0.77 14.16 16 Total: -1.00 -88.05 358.78 3.11 -84.94 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: 0.43 Total: 31.19 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: 5.02 Total: -11.20 kcal Atomic # 7 Polarization: -86.50 SS G_CDS: -4.27 Total: -90.77 kcal Atomic # 8 Polarization: -61.05 SS G_CDS: -0.10 Total: -61.15 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -88.05 3.11 -84.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601179085.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.389 kcal (2) G-P(sol) polarization free energy of solvation -88.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds