Wall clock time and date at job start Tue Mar 31 2020 11:19:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52997 * 109.47102 * 2 1
4 4 N 1.46500 * 109.47128 * 120.00425 * 2 1 3
5 5 C 1.45650 * 117.70667 * 120.00223 * 4 2 1
6 6 C 1.52987 * 110.77424 * 158.09939 * 5 4 2
7 7 N 1.47267 * 108.18916 * 46.72197 * 6 5 4
8 8 C 1.34775 * 121.35720 * 118.47482 * 7 6 5
9 9 O 1.21608 * 119.99468 * 4.52066 * 8 7 6
10 10 C 1.47424 * 120.00281 * 184.52011 * 8 7 6
11 11 C 1.39228 * 120.28453 * 307.88198 * 10 8 7
12 12 C 1.38210 * 120.09600 * 180.02562 * 11 10 8
13 13 C 1.38836 * 120.67671 * 359.97438 * 12 11 10
14 14 C 1.37597 * 120.56488 * 0.02562 * 13 12 11
15 15 C 1.40708 * 119.88461 * 0.24593 * 14 13 12
16 16 C 1.40888 * 120.32369 * 179.72924 * 15 14 13
17 17 H 1.08008 * 119.99533 * 148.42042 * 16 15 14
18 18 C 1.40271 * 120.00532 * 328.41151 * 16 15 14
19 19 N 1.30626 * 119.99710 * 347.89638 * 18 16 15
20 20 Si 1.86799 * 120.00178 * 167.88823 * 18 16 15
21 21 H 1.48498 * 109.46877 * 90.00670 * 20 18 16
22 22 H 1.48500 * 109.47267 * 210.00374 * 20 18 16
23 23 H 1.48499 * 109.47254 * 330.00809 * 20 18 16
24 24 C 1.47058 * 117.29098 * 298.74858 * 7 6 5
25 25 C 1.33378 * 117.70175 * 299.97681 * 4 2 1
26 26 O 1.21283 * 118.49341 * 4.32324 * 25 4 2
27 27 H 1.09001 * 109.47380 * 299.99470 * 1 2 3
28 28 H 1.08997 * 109.47462 * 60.00394 * 1 2 3
29 29 H 1.08999 * 109.47217 * 180.02562 * 1 2 3
30 30 H 1.09001 * 109.46834 * 239.99995 * 2 1 3
31 31 H 1.09000 * 109.46975 * 179.97438 * 3 2 1
32 32 H 1.09006 * 109.46912 * 300.00009 * 3 2 1
33 33 H 1.09001 * 109.47280 * 60.00268 * 3 2 1
34 34 H 1.08995 * 109.21949 * 37.75900 * 5 4 2
35 35 H 1.09000 * 109.17959 * 278.40669 * 5 4 2
36 36 H 1.09009 * 109.71648 * 287.05156 * 6 5 4
37 37 H 1.08992 * 109.72110 * 166.39631 * 6 5 4
38 38 H 1.08006 * 119.95095 * 0.04499 * 11 10 8
39 39 H 1.08003 * 119.66824 * 179.97438 * 12 11 10
40 40 H 1.07996 * 119.71713 * 179.97438 * 13 12 11
41 41 H 1.08002 * 120.05775 * 179.97438 * 14 13 12
42 42 H 0.97010 * 119.99929 * 179.97438 * 19 18 16
43 43 H 1.09000 * 109.56085 * 162.31112 * 24 7 6
44 44 H 1.09004 * 109.56535 * 282.66217 * 24 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 2.0183 -0.6907 1.1961
5 6 2.8520 -1.8695 1.0045
6 6 3.6989 -2.1433 2.2487
7 7 2.8249 -2.0469 3.4301
8 6 2.6259 -3.1031 4.2433
9 8 3.2363 -4.1381 4.0560
10 6 1.6683 -3.0037 5.3598
11 6 1.7562 -1.9526 6.2687
12 6 0.8567 -1.8635 7.3142
13 6 -0.1421 -2.8148 7.4724
14 6 -0.2542 -3.8649 6.5904
15 6 0.6524 -3.9819 5.5207
16 6 0.5496 -5.0565 4.6154
17 1 0.8403 -4.9231 3.5837
18 6 0.0700 -6.2996 5.0538
19 7 -0.0573 -6.5366 6.3321
20 14 -0.3870 -7.6160 3.8098
21 1 0.8022 -8.4567 3.5193
22 1 -1.4708 -8.4664 4.3643
23 1 -0.8556 -6.9716 2.5566
24 6 2.1732 -0.7531 3.6829
25 6 1.6687 -0.1955 2.3842
26 8 0.9050 0.7461 2.4166
27 1 -0.3634 0.5137 0.8900
28 1 -0.3634 0.5137 -0.8900
29 1 -0.3633 -1.0276 0.0005
30 1 1.8933 -0.5138 -0.8900
31 1 3.1300 1.4424 0.0005
32 1 1.6766 1.9563 -0.8900
33 1 1.6767 1.9563 0.8900
34 1 3.5101 -1.7086 0.1507
35 1 2.2140 -2.7312 0.8081
36 1 4.4969 -1.4042 2.3203
37 1 4.1276 -3.1436 2.1891
38 1 2.5281 -1.2057 6.1563
39 1 0.9315 -1.0455 8.0155
40 1 -0.8364 -2.7303 8.2953
41 1 -1.0340 -4.6005 6.7214
42 1 -0.3893 -7.3962 6.6353
43 1 1.3379 -0.8931 4.3690
44 1 2.8935 -0.0605 4.1185
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000601419831.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:19:52
Heat of formation + Delta-G solvation = -36.576934 kcal
Electronic energy + Delta-G solvation = -27416.336363 eV
Core-core repulsion = 23719.716115 eV
Total energy + Delta-G solvation = -3696.620247 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 316.157 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-40.79749 -39.01079 -37.07352 -36.13638 -35.33518 -33.77461 -32.23715 -30.35762
-29.86951 -29.19842 -27.18883 -26.79342 -25.46619 -24.12840 -22.38906 -21.28860
-20.99609 -19.53419 -18.15612 -17.29662 -17.10797 -16.64046 -15.87033 -15.55699
-15.43227 -15.16419 -14.57117 -14.46869 -13.94890 -13.90155 -13.62539 -13.32294
-13.15018 -12.80406 -12.58948 -12.51697 -12.23069 -12.11297 -12.03055 -11.73886
-11.66572 -11.46389 -11.23080 -11.16709 -11.13758 -11.02631 -10.88165 -10.53938
-10.04574 -9.78088 -9.60659 -9.30351 -8.83268 -8.71184 -8.26316 -7.59949
-7.49055 -6.86330 -4.48923 2.41586 2.67882 2.77262 2.90244 3.03866
3.08341 3.16628 3.37473 3.75961 3.89206 4.49052 4.55330 4.77356
4.91250 5.01644 5.14499 5.15791 5.28083 5.42500 5.49135 5.54172
5.60319 5.66621 5.68585 5.80803 5.86731 5.93200 5.95314 6.02767
6.17719 6.27403 6.34530 6.48520 6.60186 6.81404 6.91332 7.02937
7.14980 7.38111 7.50216 7.60212 7.71435 7.90645 7.94280 8.10927
8.24478 8.46884 8.71546 8.78297 9.02504 10.08955
Molecular weight = 316.16amu
Principal moments of inertia in cm(-1)
A = 0.013426 B = 0.004836 C = 0.004243
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2084.980711 B = 5788.408254 C = 6597.591607
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C 0.137 3.863
3 C -0.168 4.168
4 N -0.599 5.599
5 C 0.100 3.900
6 C 0.099 3.901
7 N -0.628 5.628
8 C 0.592 3.408
9 O -0.530 6.530
10 C -0.258 4.258
11 C -0.064 4.064
12 C -0.241 4.241
13 C -0.093 4.093
14 C -0.151 4.151
15 C 0.150 3.850
16 C -0.435 4.435
17 H 0.078 0.922
18 C 0.078 3.922
19 N -0.787 5.787
20 Si 0.912 3.088
21 H -0.267 1.267
22 H -0.275 1.275
23 H -0.261 1.261
24 C 0.098 3.902
25 C 0.516 3.484
26 O -0.543 6.543
27 H 0.087 0.913
28 H 0.058 0.942
29 H 0.052 0.948
30 H 0.082 0.918
31 H 0.050 0.950
32 H 0.061 0.939
33 H 0.080 0.920
34 H 0.083 0.917
35 H 0.070 0.930
36 H 0.070 0.930
37 H 0.110 0.890
38 H 0.093 0.907
39 H 0.093 0.907
40 H 0.092 0.908
41 H 0.119 0.881
42 H 0.284 0.716
43 H 0.133 0.867
44 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.569 9.158 -10.035 14.046
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.230 4.230
2 C 0.034 3.966
3 C -0.226 4.226
4 N -0.332 5.332
5 C -0.024 4.024
6 C -0.024 4.024
7 N -0.366 5.366
8 C 0.385 3.615
9 O -0.405 6.405
10 C -0.263 4.263
11 C -0.082 4.082
12 C -0.260 4.260
13 C -0.112 4.112
14 C -0.170 4.170
15 C 0.147 3.853
16 C -0.463 4.463
17 H 0.096 0.904
18 C -0.142 4.142
19 N -0.411 5.411
20 Si 0.736 3.264
21 H -0.192 1.192
22 H -0.200 1.200
23 H -0.185 1.185
24 C -0.028 4.028
25 C 0.304 3.696
26 O -0.421 6.421
27 H 0.106 0.894
28 H 0.077 0.923
29 H 0.071 0.929
30 H 0.100 0.900
31 H 0.070 0.930
32 H 0.080 0.920
33 H 0.099 0.901
34 H 0.101 0.899
35 H 0.088 0.912
36 H 0.088 0.912
37 H 0.128 0.872
38 H 0.111 0.889
39 H 0.111 0.889
40 H 0.110 0.890
41 H 0.136 0.864
42 H 0.095 0.905
43 H 0.151 0.849
44 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges 3.451 8.828 -9.913 13.716
hybrid contribution -0.050 -0.714 -0.498 0.872
sum 3.401 8.114 -10.412 13.631
Atomic orbital electron populations
1.22263 0.94635 1.02373 1.03777 1.21085 0.95217 0.93336 0.86931
1.22190 1.00553 0.96190 1.03626 1.47398 1.50928 1.28770 1.06114
1.21849 0.93968 0.87753 0.98832 1.21784 0.92356 1.04476 0.83815
1.48315 1.48827 1.11681 1.27781 1.18541 0.80676 0.81077 0.81185
1.90693 1.48411 1.28799 1.72624 1.19367 1.02140 1.03799 1.01004
1.20614 0.97196 0.95422 0.95008 1.20289 1.01458 1.02355 1.01904
1.20811 0.97362 0.95080 0.97903 1.21296 1.00499 0.97882 0.97355
1.17342 0.87436 0.89486 0.91054 1.19525 1.35369 0.94170 0.97249
0.90406 1.25943 0.92521 0.99913 0.95773 1.69697 1.32181 1.24101
1.15129 0.86240 0.78977 0.79976 0.81203 1.19168 1.19974 1.18459
1.21932 1.00382 0.85363 0.95141 1.20362 0.80622 0.83167 0.85480
1.90621 1.35013 1.29225 1.87223 0.89397 0.92291 0.92862 0.90031
0.93040 0.91994 0.90131 0.89917 0.91164 0.91183 0.87191 0.88902
0.88875 0.88965 0.86351 0.90530 0.84893 0.88885
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.13 9.08 37.16 0.34 -1.79 16
2 C 0.14 1.56 3.19 -67.93 -0.22 1.34 16
3 C -0.17 -1.78 9.08 37.16 0.34 -1.44 16
4 N -0.60 -7.87 2.78 -167.46 -0.47 -8.34 16
5 C 0.10 1.16 6.45 -4.51 -0.03 1.13 16
6 C 0.10 1.32 6.53 -3.63 -0.02 1.30 16
7 N -0.63 -10.83 2.98 -175.62 -0.52 -11.35 16
8 C 0.59 13.13 6.47 -12.52 -0.08 13.05 16
9 O -0.53 -13.35 15.56 5.27 0.08 -13.26 16
10 C -0.26 -6.12 4.94 -104.37 -0.52 -6.64 16
11 C -0.06 -1.34 7.56 -39.22 -0.30 -1.64 16
12 C -0.24 -5.04 10.03 -39.37 -0.39 -5.44 16
13 C -0.09 -2.06 10.01 -39.59 -0.40 -2.46 16
14 C -0.15 -3.77 8.64 -38.88 -0.34 -4.10 16
15 C 0.15 3.93 5.53 -106.54 -0.59 3.34 16
16 C -0.43 -11.56 7.87 -37.82 -0.30 -11.86 16
17 H 0.08 2.09 7.23 -52.48 -0.38 1.71 16
18 C 0.08 1.95 5.21 -17.30 -0.09 1.86 16
19 N -0.79 -20.11 11.11 55.56 0.62 -19.49 16
20 Si 0.91 18.99 29.58 -169.99 -5.03 13.96 16
21 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16
22 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16
23 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16
24 C 0.10 1.54 5.24 -5.19 -0.03 1.51 16
25 C 0.52 8.02 6.97 -11.91 -0.08 7.94 16
26 O -0.54 -9.46 12.49 5.55 0.07 -9.39 16
27 H 0.09 1.32 5.76 -51.93 -0.30 1.02 16
28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16
29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16
30 H 0.08 0.74 7.73 -51.93 -0.40 0.34 16
31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16
32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16
33 H 0.08 1.06 6.07 -51.93 -0.32 0.74 16
34 H 0.08 0.69 7.94 -51.93 -0.41 0.27 16
35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16
36 H 0.07 0.78 8.14 -51.92 -0.42 0.35 16
37 H 0.11 1.57 7.07 -51.93 -0.37 1.20 16
38 H 0.09 1.68 7.23 -52.48 -0.38 1.30 16
39 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16
40 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16
41 H 0.12 3.02 6.49 -52.49 -0.34 2.68 16
42 H 0.28 6.57 8.29 -40.82 -0.34 6.24 16
43 H 0.13 2.38 5.35 -51.93 -0.28 2.10 16
44 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16
LS Contribution 350.90 15.07 5.29 5.29
Total: -1.00 -30.36 350.90 -8.78 -39.14
By element:
Atomic # 1 Polarization: 13.45 SS G_CDS: -6.11 Total: 7.34 kcal
Atomic # 6 Polarization: -1.19 SS G_CDS: -2.70 Total: -3.90 kcal
Atomic # 7 Polarization: -38.81 SS G_CDS: -0.37 Total: -39.18 kcal
Atomic # 8 Polarization: -22.81 SS G_CDS: 0.15 Total: -22.65 kcal
Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.96 kcal
Total LS contribution 5.29 Total: 5.29 kcal
Total: -30.36 -8.78 -39.14 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601419831.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 2.564 kcal
(2) G-P(sol) polarization free energy of solvation -30.365 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.801 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.141 kcal
(6) G-S(sol) free energy of system = (1) + (5) -36.577 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds