Wall clock time and date at job start Tue Mar 31 2020 11:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47451 * 2 1 4 4 N 1.46506 * 109.47288 * 119.99968 * 2 1 3 5 5 C 1.46499 * 119.99537 * 300.00127 * 4 2 1 6 6 C 1.50697 * 109.46949 * 269.99553 * 5 4 2 7 7 H 1.08004 * 120.00186 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00081 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99813 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 120.00047 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47231 * 89.99796 * 10 8 6 12 12 H 1.48499 * 109.47342 * 210.00322 * 10 8 6 13 13 H 1.48505 * 109.46935 * 330.00024 * 10 8 6 14 14 C 1.34777 * 120.00264 * 119.99477 * 4 2 1 15 15 O 1.21283 * 119.99750 * 180.02562 * 14 4 2 16 16 C 1.50702 * 119.99928 * 0.28128 * 14 4 2 17 17 C 1.52996 * 109.47159 * 179.72352 * 16 14 4 18 18 H 1.09000 * 110.45582 * 56.14469 * 17 16 14 19 19 C 1.51130 * 110.51094 * 178.89728 * 17 16 14 20 20 C 1.37674 * 132.85496 * 298.64161 * 19 17 16 21 21 C 1.38393 * 119.91877 * 180.02562 * 20 19 17 22 22 C 1.38308 * 119.82468 * 0.02562 * 21 20 19 23 23 C 1.37932 * 120.37329 * 0.02562 * 22 21 20 24 24 C 1.38901 * 106.33954 * 118.64596 * 19 17 16 25 25 N 1.39529 * 110.23305 * 359.97438 * 24 19 17 26 26 C 1.34368 * 112.24409 * 0.02562 * 25 24 19 27 27 O 1.21290 * 126.44291 * 180.02562 * 26 25 24 28 28 H 1.09005 * 109.47280 * 300.00296 * 1 2 3 29 29 H 1.09002 * 109.46985 * 60.00287 * 1 2 3 30 30 H 1.09000 * 109.47344 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47280 * 239.99704 * 2 1 3 32 32 H 1.09006 * 109.47195 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46792 * 299.99831 * 3 2 1 34 34 H 1.08995 * 109.47040 * 59.99763 * 3 2 1 35 35 H 1.09001 * 109.47567 * 29.99407 * 5 4 2 36 36 H 1.09005 * 109.47076 * 149.99913 * 5 4 2 37 37 H 0.97004 * 119.99796 * 179.97438 * 9 8 6 38 38 H 1.09004 * 109.46965 * 299.72211 * 16 14 4 39 39 H 1.08994 * 109.46990 * 59.72065 * 16 14 4 40 40 H 1.08004 * 120.04413 * 359.97438 * 20 19 17 41 41 H 1.08002 * 120.09172 * 180.02562 * 21 20 19 42 42 H 1.08002 * 119.81302 * 180.02562 * 22 21 20 43 43 H 1.08000 * 119.93420 * 179.97438 * 23 22 21 44 44 H 0.96994 * 123.87689 * 180.02562 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6643 -0.1900 2.5267 6 6 2.7031 0.8018 2.9829 7 1 3.5427 1.0363 2.3454 8 6 2.5816 1.4101 4.2143 9 7 3.4879 2.2762 4.6122 10 14 1.1298 1.0042 5.3174 11 1 1.4800 -0.1414 6.1950 12 1 0.7982 2.1855 6.1541 13 1 -0.0431 0.6459 4.4801 14 6 2.7931 -1.7865 1.0726 15 8 3.1970 -2.3584 2.0629 16 6 3.1623 -2.2978 -0.2961 17 6 4.0464 -3.5385 -0.1557 18 1 3.5443 -4.2982 0.4434 19 6 4.4088 -4.0872 -1.5164 20 6 3.6563 -4.5869 -2.5554 21 6 4.2797 -5.0281 -3.7094 22 6 5.6574 -4.9656 -3.8140 23 6 6.4138 -4.4664 -2.7742 24 6 5.7930 -4.0183 -1.6096 25 7 6.3291 -3.4794 -0.4395 26 6 5.3799 -3.1722 0.4605 27 8 5.5578 -2.6912 1.5596 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 0.6904 0.2975 2.4843 36 1 1.6237 -1.0226 3.2292 37 1 3.4022 2.7044 5.4784 38 1 2.2562 -2.5573 -0.8436 39 1 3.7055 -1.5241 -0.8386 40 1 2.5807 -4.6353 -2.4696 41 1 3.6920 -5.4202 -4.5264 42 1 6.1437 -5.3096 -4.7149 43 1 7.4892 -4.4212 -2.8632 44 1 7.2780 -3.3424 -0.2927 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608814687.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:41 Heat of formation + Delta-G solvation = -28.304093 kcal Electronic energy + Delta-G solvation = -26973.080695 eV Core-core repulsion = 23276.819185 eV Total energy + Delta-G solvation = -3696.261510 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.62196 -39.16242 -38.24644 -35.97945 -35.56765 -33.52824 -32.60376 -30.91907 -30.42912 -29.28615 -28.01179 -26.74263 -25.75250 -22.75920 -22.36106 -21.51857 -21.37159 -20.44029 -18.00054 -17.90263 -17.08657 -16.77736 -16.39975 -15.89020 -15.80159 -15.15159 -14.66620 -14.47350 -14.17785 -13.99330 -13.58879 -13.50005 -13.41209 -13.03405 -12.85522 -12.63377 -12.44493 -12.22749 -12.06893 -11.77628 -11.69588 -11.58655 -11.30578 -11.07213 -10.87208 -10.83031 -10.79714 -10.44816 -10.27124 -10.02908 -9.74165 -9.36787 -9.13660 -8.80206 -8.48113 -8.11415 -7.58456 -5.98153 -3.94507 1.03829 1.11316 2.65883 3.01360 3.34758 3.40415 3.43130 3.45451 3.60800 3.84175 4.11681 4.37088 4.48125 4.65410 4.77695 4.92870 5.06261 5.12625 5.20151 5.22249 5.28603 5.36370 5.48996 5.53717 5.59539 5.64454 5.71927 5.88351 5.95754 5.98393 6.12627 6.18663 6.27349 6.27655 6.34618 6.52254 6.56616 6.82700 6.85080 6.93506 7.02960 7.07193 7.48452 7.72856 8.20403 8.37656 8.59156 9.06148 9.12592 9.62813 11.15456 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.019033 B = 0.003860 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.798401 B = 7251.381115 C = 7987.311515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.133 3.867 3 C -0.157 4.157 4 N -0.590 5.590 5 C 0.218 3.782 6 C -0.516 4.516 7 H 0.075 0.925 8 C 0.070 3.930 9 N -0.900 5.900 10 Si 0.873 3.127 11 H -0.275 1.275 12 H -0.287 1.287 13 H -0.267 1.267 14 C 0.498 3.502 15 O -0.512 6.512 16 C -0.117 4.117 17 C -0.063 4.063 18 H 0.128 0.872 19 C -0.139 4.139 20 C -0.062 4.062 21 C -0.148 4.148 22 C -0.085 4.085 23 C -0.147 4.147 24 C 0.156 3.844 25 N -0.671 5.671 26 C 0.522 3.478 27 O -0.442 6.442 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.081 0.919 35 H 0.029 0.971 36 H 0.034 0.966 37 H 0.262 0.738 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.124 0.876 44 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.597 -13.212 -20.977 24.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.029 3.971 3 C -0.215 4.215 4 N -0.323 5.323 5 C 0.097 3.903 6 C -0.555 4.555 7 H 0.093 0.907 8 C -0.131 4.131 9 N -0.539 5.539 10 Si 0.700 3.300 11 H -0.200 1.200 12 H -0.213 1.213 13 H -0.192 1.192 14 C 0.284 3.716 15 O -0.387 6.387 16 C -0.158 4.158 17 C -0.085 4.085 18 H 0.146 0.854 19 C -0.142 4.142 20 C -0.080 4.080 21 C -0.167 4.167 22 C -0.104 4.104 23 C -0.169 4.169 24 C 0.058 3.942 25 N -0.316 5.316 26 C 0.307 3.693 27 O -0.309 6.309 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.100 0.900 35 H 0.047 0.953 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.118 0.882 39 H 0.109 0.891 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.145 0.855 43 H 0.142 0.858 44 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -0.354 -13.065 -19.503 23.477 hybrid contribution -0.054 0.064 0.623 0.629 sum -0.409 -13.001 -18.880 22.927 Atomic orbital electron populations 1.22169 0.95717 1.01713 1.02414 1.21014 0.93905 0.94389 0.87813 1.22136 1.01690 0.95413 1.02234 1.47961 1.49941 1.26688 1.07749 1.19578 0.96116 0.95059 0.79539 1.21348 1.09096 1.22142 1.02916 0.90652 1.24853 0.96044 0.94889 0.97353 1.69904 1.34655 1.28610 1.20703 0.86903 0.83489 0.78147 0.81436 1.20040 1.21264 1.19157 1.20158 0.79558 0.81487 0.90425 1.90770 1.51158 1.57655 1.39070 1.21505 1.00161 0.96292 0.97831 1.20425 0.95690 0.99193 0.93193 0.85444 1.19876 0.92971 1.04850 0.96553 1.20296 0.99809 0.96340 0.91597 1.21021 0.94653 1.03026 0.98049 1.20847 0.93945 0.97878 0.97729 1.20357 1.00056 1.04363 0.92091 1.18221 0.92891 0.95474 0.87660 1.43969 1.10797 1.61634 1.15201 1.20534 0.86623 0.77769 0.84399 1.91002 1.83684 1.38776 1.17452 0.91613 0.92090 0.92874 0.90625 0.92574 0.93322 0.90044 0.95284 0.94838 0.92774 0.88203 0.89104 0.85395 0.85509 0.85474 0.85803 0.75230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 9.17 37.15 0.34 -1.87 16 2 C 0.13 2.13 3.17 -67.93 -0.22 1.91 16 3 C -0.16 -2.68 8.47 37.16 0.31 -2.37 16 4 N -0.59 -12.23 2.39 -167.47 -0.40 -12.63 16 5 C 0.22 5.40 3.66 -5.20 -0.02 5.38 16 6 C -0.52 -15.07 8.38 -34.44 -0.29 -15.36 16 7 H 0.08 2.43 7.87 -52.48 -0.41 2.02 16 8 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 9 N -0.90 -28.49 13.96 55.43 0.77 -27.72 16 10 Si 0.87 22.20 27.47 -169.99 -4.67 17.53 16 11 H -0.27 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 14 C 0.50 10.29 7.35 -10.98 -0.08 10.21 16 15 O -0.51 -12.92 13.20 -17.22 -0.23 -13.15 16 16 C -0.12 -1.71 3.55 -27.88 -0.10 -1.81 16 17 C -0.06 -0.90 2.63 -92.37 -0.24 -1.15 16 18 H 0.13 1.85 8.02 -51.93 -0.42 1.43 16 19 C -0.14 -1.56 5.67 -104.37 -0.59 -2.15 16 20 C -0.06 -0.54 10.03 -39.73 -0.40 -0.94 16 21 C -0.15 -1.09 10.07 -39.50 -0.40 -1.48 16 22 C -0.09 -0.62 10.02 -39.67 -0.40 -1.02 16 23 C -0.15 -1.27 10.07 -39.27 -0.40 -1.66 16 24 C 0.16 1.73 7.11 -83.69 -0.60 1.14 16 25 N -0.67 -8.61 5.88 -9.70 -0.06 -8.67 16 26 C 0.52 8.94 7.81 -10.83 -0.08 8.86 16 27 O -0.44 -10.11 15.54 -17.23 -0.27 -10.38 16 28 H 0.06 1.02 6.66 -51.93 -0.35 0.67 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.98 5.77 -51.93 -0.30 0.68 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 1.64 6.92 -51.93 -0.36 1.28 16 35 H 0.03 0.69 5.49 -51.93 -0.28 0.40 16 36 H 0.03 0.90 6.85 -51.93 -0.36 0.55 16 37 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 38 H 0.10 1.10 7.79 -51.93 -0.40 0.70 16 39 H 0.09 1.28 7.78 -51.93 -0.40 0.88 16 40 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 41 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 43 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 44 H 0.41 4.38 8.96 -40.82 -0.37 4.02 16 LS Contribution 357.05 15.07 5.38 5.38 Total: -1.00 -37.76 357.05 -8.91 -46.67 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -6.20 Total: 3.27 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -3.25 Total: -0.31 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: 0.32 Total: -49.02 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.50 Total: -23.53 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.67 Total: 17.53 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -37.76 -8.91 -46.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608814687.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.370 kcal (2) G-P(sol) polarization free energy of solvation -37.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds