Wall clock time and date at job start Tue Mar 31 2020 11:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47022 * 2 1 4 4 H 1.09002 * 109.46850 * 55.34576 * 3 2 1 5 5 C 1.52999 * 109.47216 * 175.34247 * 3 2 1 6 6 O 1.42902 * 109.47221 * 55.12054 * 5 3 2 7 7 C 1.42900 * 114.00354 * 184.83784 * 6 5 3 8 8 N 1.46498 * 109.47581 * 295.34334 * 3 2 1 9 9 C 1.34774 * 119.99664 * 97.35723 * 8 3 2 10 10 O 1.21664 * 120.00616 * 5.08933 * 9 8 3 11 11 C 1.46896 * 119.99792 * 185.09075 * 9 8 3 12 12 C 1.36123 * 125.43446 * 186.61643 * 11 9 8 13 13 C 1.41705 * 107.74399 * 180.28099 * 12 11 9 14 14 C 1.40021 * 133.34938 * 179.78509 * 13 12 11 15 15 C 1.36577 * 119.83245 * 179.97438 * 14 13 12 16 16 C 1.38857 * 120.59905 * 359.95684 * 15 14 13 17 17 C 1.37844 * 120.63197 * 0.02562 * 16 15 14 18 18 C 1.39087 * 119.81368 * 359.97438 * 17 16 15 19 19 N 1.37838 * 133.16230 * 180.02562 * 18 17 16 20 20 C 1.36893 * 125.62021 * 359.97438 * 19 18 17 21 21 H 1.08004 * 119.99863 * 225.78539 * 20 19 18 22 22 C 1.39013 * 120.00302 * 45.78311 * 20 19 18 23 23 N 1.31349 * 120.00275 * 197.17217 * 22 20 19 24 24 Si 1.86796 * 119.99704 * 17.17495 * 22 20 19 25 25 H 1.48500 * 109.47189 * 264.58890 * 24 22 20 26 26 H 1.48501 * 109.47304 * 24.59446 * 24 22 20 27 27 H 1.48504 * 109.47324 * 144.59101 * 24 22 20 28 28 H 1.09004 * 109.47464 * 59.99502 * 1 2 3 29 29 H 1.09004 * 109.47356 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47387 * 299.99836 * 1 2 3 31 31 H 1.09009 * 109.47219 * 240.00608 * 2 1 3 32 32 H 1.08995 * 109.47572 * 120.00561 * 2 1 3 33 33 H 1.08999 * 109.47446 * 175.11837 * 5 3 2 34 34 H 1.08998 * 109.47419 * 295.12258 * 5 3 2 35 35 H 1.09001 * 109.46696 * 299.99448 * 7 6 5 36 36 H 1.09000 * 109.47454 * 59.99533 * 7 6 5 37 37 H 1.08994 * 109.47261 * 180.02562 * 7 6 5 38 38 H 0.96995 * 119.99915 * 277.36381 * 8 3 2 39 39 H 1.07996 * 126.12935 * 0.02562 * 12 11 9 40 40 H 1.08006 * 120.08215 * 359.97438 * 14 13 12 41 41 H 1.08001 * 119.69989 * 179.97438 * 15 14 13 42 42 H 1.07993 * 119.68556 * 180.02562 * 16 15 14 43 43 H 1.07997 * 120.09569 * 179.97438 * 17 16 15 44 44 H 0.96992 * 120.00271 * 174.99231 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6100 1.9798 0.8454 5 6 3.5654 1.4441 0.1171 6 8 4.1242 0.6446 -0.9272 7 6 5.5424 0.4896 -0.8450 8 7 1.6453 2.1001 -1.2482 9 6 0.5445 2.8770 -1.2818 10 8 -0.0690 3.1074 -0.2568 11 6 0.0855 3.4456 -2.5561 12 6 -0.9290 4.3416 -2.7006 13 6 -1.0571 4.6299 -4.0821 14 6 -1.9138 5.4600 -4.8153 15 6 -1.7921 5.5316 -6.1738 16 6 -0.8245 4.7885 -6.8370 17 6 0.0306 3.9646 -6.1368 18 6 -0.0742 3.8751 -4.7528 19 7 0.6173 3.1593 -3.7992 20 6 1.6554 2.3010 -4.0438 21 1 1.6787 1.3321 -3.5671 22 6 2.6793 2.6763 -4.9058 23 7 3.4830 1.7661 -5.4067 24 14 2.9123 4.4753 -5.3517 25 1 2.2195 4.7613 -6.6337 26 1 2.3414 5.3291 -4.2792 27 1 4.3615 4.7657 -5.4968 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.9354 2.4657 0.0301 34 1 3.8560 1.0336 1.0841 35 1 6.0186 1.4685 -0.8997 36 1 5.8016 0.0117 0.0997 37 1 5.8888 -0.1292 -1.6727 38 1 2.1762 1.9762 -2.0505 39 1 -1.5314 4.7552 -1.9053 40 1 -2.6689 6.0421 -4.3079 41 1 -2.4542 6.1722 -6.7373 42 1 -0.7411 4.8567 -7.9115 43 1 0.7797 3.3902 -6.6614 44 1 4.1507 2.0174 -6.0637 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609979464.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:06 Heat of formation + Delta-G solvation = -23.490063 kcal Electronic energy + Delta-G solvation = -27482.419750 eV Core-core repulsion = 23786.366992 eV Total energy + Delta-G solvation = -3696.052758 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.81253 -39.09954 -37.63443 -36.18417 -35.14771 -33.59093 -31.82841 -31.34371 -29.46571 -28.99226 -28.07541 -26.08685 -24.92734 -23.67170 -22.92729 -21.15399 -20.74827 -19.93483 -19.25035 -18.38241 -16.87081 -16.32360 -15.82693 -15.80358 -15.37465 -15.08354 -14.87603 -14.61792 -14.20668 -13.99454 -13.75965 -13.30080 -13.16309 -13.07065 -12.79076 -12.70594 -12.44900 -12.13951 -12.01287 -11.93878 -11.44844 -11.31675 -11.02916 -10.98986 -10.91394 -10.78129 -10.53865 -10.51043 -10.26521 -9.92295 -9.52644 -9.49620 -9.37451 -8.73604 -8.43698 -7.37760 -6.99385 -6.89364 -4.70878 1.59892 2.46886 2.84244 2.99726 3.10569 3.18667 3.76005 3.84324 3.98502 4.11872 4.16298 4.59249 4.75718 4.93923 5.20544 5.33260 5.45074 5.46602 5.49123 5.54477 5.63849 5.69261 5.69950 5.80864 5.85979 5.92294 6.01270 6.17894 6.18507 6.23420 6.24202 6.42068 6.53789 6.61426 6.68598 6.75942 6.82787 7.09386 7.16701 7.23134 7.31676 7.33235 7.56352 7.63605 7.74368 8.08749 8.31466 8.60696 8.94907 9.01642 10.06702 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013843 B = 0.005763 C = 0.004471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.215340 B = 4857.462545 C = 6261.135027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.128 4.128 3 C 0.143 3.857 4 H 0.102 0.898 5 C 0.052 3.948 6 O -0.376 6.376 7 C 0.035 3.965 8 N -0.716 5.716 9 C 0.596 3.404 10 O -0.558 6.558 11 C -0.011 4.011 12 C -0.161 4.161 13 C -0.126 4.126 14 C -0.076 4.076 15 C -0.161 4.161 16 C -0.129 4.129 17 C -0.103 4.103 18 C 0.065 3.935 19 N -0.275 5.275 20 C -0.375 4.375 21 H 0.126 0.874 22 C 0.090 3.910 23 N -0.820 5.820 24 Si 0.870 3.130 25 H -0.247 1.247 26 H -0.254 1.254 27 H -0.282 1.282 28 H 0.055 0.945 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.038 0.962 36 H 0.036 0.964 37 H 0.086 0.914 38 H 0.425 0.575 39 H 0.138 0.862 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.112 0.888 43 H 0.118 0.882 44 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.220 -0.122 4.943 5.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.166 4.166 3 C 0.037 3.963 4 H 0.120 0.880 5 C -0.025 4.025 6 O -0.295 6.295 7 C -0.062 4.062 8 N -0.375 5.375 9 C 0.385 3.615 10 O -0.438 6.438 11 C -0.126 4.126 12 C -0.188 4.188 13 C -0.131 4.131 14 C -0.095 4.095 15 C -0.180 4.180 16 C -0.150 4.150 17 C -0.123 4.123 18 C -0.049 4.049 19 N 0.060 4.940 20 C -0.501 4.501 21 H 0.143 0.857 22 C -0.125 4.125 23 N -0.448 5.448 24 Si 0.694 3.306 25 H -0.171 1.171 26 H -0.177 1.177 27 H -0.208 1.208 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.105 0.895 38 H 0.272 0.728 39 H 0.155 0.845 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.130 0.870 43 H 0.136 0.864 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.280 -0.435 5.416 5.582 hybrid contribution 0.873 0.730 -0.567 1.271 sum 2.152 0.295 4.848 5.313 Atomic orbital electron populations 1.21712 0.95505 1.00680 1.02467 1.21807 0.96316 0.95957 1.02532 1.21072 0.91580 0.94112 0.89533 0.87997 1.22889 0.93848 0.95072 0.90726 1.87993 1.20668 1.71339 1.49458 1.22699 0.81718 1.00502 1.01283 1.46693 1.28052 1.48441 1.14337 1.17192 0.80048 0.77423 0.86883 1.90707 1.57357 1.61971 1.33733 1.20282 1.02705 1.04404 0.85200 1.20466 1.01468 1.02175 0.94664 1.18016 0.99380 1.02407 0.93307 1.20177 0.97925 0.97930 0.93466 1.20353 1.00667 1.02732 0.94222 1.20589 0.97009 0.98768 0.98619 1.20178 1.00494 1.00636 0.91004 1.18459 0.95448 1.00110 0.90898 1.40289 1.22337 1.29138 1.02241 1.19251 0.99444 0.98530 1.32878 0.85670 1.25460 0.93807 0.99262 0.94015 1.69633 1.17853 1.34390 1.22878 0.86902 0.78007 0.83689 0.82005 1.17150 1.17701 1.20793 0.92591 0.93377 0.92690 0.90693 0.91784 0.92832 0.92454 0.94346 0.94589 0.89549 0.72838 0.84450 0.87130 0.87278 0.86995 0.86425 0.90194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.21 37.15 0.34 -1.98 16 2 C -0.13 -1.92 5.34 -26.74 -0.14 -2.07 16 3 C 0.14 2.31 2.66 -67.93 -0.18 2.13 16 4 H 0.10 1.65 7.16 -51.93 -0.37 1.28 16 5 C 0.05 0.74 5.75 37.16 0.21 0.95 16 6 O -0.38 -6.02 9.63 -35.23 -0.34 -6.36 16 7 C 0.03 0.43 11.01 101.05 1.11 1.55 16 8 N -0.72 -14.18 4.52 -55.05 -0.25 -14.43 16 9 C 0.60 13.04 6.34 -12.76 -0.08 12.96 16 10 O -0.56 -12.58 15.90 5.22 0.08 -12.50 16 11 C -0.01 -0.26 6.77 -82.25 -0.56 -0.82 16 12 C -0.16 -3.55 10.55 -39.02 -0.41 -3.96 16 13 C -0.13 -2.77 6.16 -106.89 -0.66 -3.43 16 14 C -0.08 -1.43 10.06 -39.51 -0.40 -1.83 16 15 C -0.16 -2.82 9.97 -39.95 -0.40 -3.22 16 16 C -0.13 -2.43 10.02 -39.50 -0.40 -2.83 16 17 C -0.10 -2.26 6.93 -39.41 -0.27 -2.53 16 18 C 0.06 1.52 5.14 -83.84 -0.43 1.09 16 19 N -0.27 -6.66 2.36 -56.08 -0.13 -6.79 16 20 C -0.37 -9.29 7.95 -15.00 -0.12 -9.41 16 21 H 0.13 3.24 6.84 -52.48 -0.36 2.88 16 22 C 0.09 2.22 4.98 -17.47 -0.09 2.13 16 23 N -0.82 -20.46 13.95 55.50 0.77 -19.69 16 24 Si 0.87 19.82 24.37 -169.99 -4.14 15.68 16 25 H -0.25 -5.40 5.80 56.52 0.33 -5.07 16 26 H -0.25 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H 0.05 1.04 6.72 -51.93 -0.35 0.69 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.07 1.24 7.72 -51.92 -0.40 0.84 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.43 9.14 4.63 -40.82 -0.19 8.95 16 39 H 0.14 2.76 8.06 -52.49 -0.42 2.34 16 40 H 0.11 1.75 8.06 -52.48 -0.42 1.33 16 41 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 42 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 43 H 0.12 2.62 6.12 -52.49 -0.32 2.30 16 44 H 0.29 6.64 8.31 -40.82 -0.34 6.30 16 LS Contribution 354.43 15.07 5.34 5.34 Total: -1.00 -27.73 354.43 -7.40 -35.13 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -6.27 Total: 14.88 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -2.46 Total: -11.27 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.39 Total: -40.91 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.26 Total: -18.85 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -4.14 Total: 15.68 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -27.73 -7.40 -35.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609979464.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.642 kcal (2) G-P(sol) polarization free energy of solvation -27.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds