Wall clock time and date at job start Tue Mar 31 2020 11:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47022 * 2 1 4 4 H 1.09002 * 109.46850 * 55.34576 * 3 2 1 5 5 C 1.52999 * 109.47216 * 175.34247 * 3 2 1 6 6 O 1.42902 * 109.47221 * 55.12054 * 5 3 2 7 7 C 1.42900 * 114.00354 * 184.83784 * 6 5 3 8 8 N 1.46498 * 109.47581 * 295.34334 * 3 2 1 9 9 C 1.34774 * 119.99664 * 97.35723 * 8 3 2 10 10 O 1.21664 * 120.00616 * 5.08933 * 9 8 3 11 11 C 1.46896 * 119.99792 * 185.09075 * 9 8 3 12 12 C 1.36123 * 125.43446 * 186.61643 * 11 9 8 13 13 C 1.41705 * 107.74399 * 180.28099 * 12 11 9 14 14 C 1.40021 * 133.34938 * 179.78509 * 13 12 11 15 15 C 1.36577 * 119.83245 * 179.97438 * 14 13 12 16 16 C 1.38857 * 120.59905 * 359.95684 * 15 14 13 17 17 C 1.37844 * 120.63197 * 0.02562 * 16 15 14 18 18 C 1.39087 * 119.81368 * 359.97438 * 17 16 15 19 19 N 1.37838 * 133.16230 * 180.02562 * 18 17 16 20 20 C 1.36893 * 125.62021 * 359.97438 * 19 18 17 21 21 H 1.08004 * 119.99863 * 225.78539 * 20 19 18 22 22 C 1.39013 * 120.00302 * 45.78311 * 20 19 18 23 23 N 1.31349 * 120.00275 * 197.17217 * 22 20 19 24 24 Si 1.86796 * 119.99704 * 17.17495 * 22 20 19 25 25 H 1.48500 * 109.47189 * 264.58890 * 24 22 20 26 26 H 1.48501 * 109.47304 * 24.59446 * 24 22 20 27 27 H 1.48504 * 109.47324 * 144.59101 * 24 22 20 28 28 H 1.09004 * 109.47464 * 59.99502 * 1 2 3 29 29 H 1.09004 * 109.47356 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47387 * 299.99836 * 1 2 3 31 31 H 1.09009 * 109.47219 * 240.00608 * 2 1 3 32 32 H 1.08995 * 109.47572 * 120.00561 * 2 1 3 33 33 H 1.08999 * 109.47446 * 175.11837 * 5 3 2 34 34 H 1.08998 * 109.47419 * 295.12258 * 5 3 2 35 35 H 1.09001 * 109.46696 * 299.99448 * 7 6 5 36 36 H 1.09000 * 109.47454 * 59.99533 * 7 6 5 37 37 H 1.08994 * 109.47261 * 180.02562 * 7 6 5 38 38 H 0.96995 * 119.99915 * 277.36381 * 8 3 2 39 39 H 1.07996 * 126.12935 * 0.02562 * 12 11 9 40 40 H 1.08006 * 120.08215 * 359.97438 * 14 13 12 41 41 H 1.08001 * 119.69989 * 179.97438 * 15 14 13 42 42 H 1.07993 * 119.68556 * 180.02562 * 16 15 14 43 43 H 1.07997 * 120.09569 * 179.97438 * 17 16 15 44 44 H 0.96992 * 120.00271 * 174.99231 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6100 1.9798 0.8454 5 6 3.5654 1.4441 0.1171 6 8 4.1242 0.6446 -0.9272 7 6 5.5424 0.4896 -0.8450 8 7 1.6453 2.1001 -1.2482 9 6 0.5445 2.8770 -1.2818 10 8 -0.0690 3.1074 -0.2568 11 6 0.0855 3.4456 -2.5561 12 6 -0.9290 4.3416 -2.7006 13 6 -1.0571 4.6299 -4.0821 14 6 -1.9138 5.4600 -4.8153 15 6 -1.7921 5.5316 -6.1738 16 6 -0.8245 4.7885 -6.8370 17 6 0.0306 3.9646 -6.1368 18 6 -0.0742 3.8751 -4.7528 19 7 0.6173 3.1593 -3.7992 20 6 1.6554 2.3010 -4.0438 21 1 1.6787 1.3321 -3.5671 22 6 2.6793 2.6763 -4.9058 23 7 3.4830 1.7661 -5.4067 24 14 2.9123 4.4753 -5.3517 25 1 2.2195 4.7613 -6.6337 26 1 2.3414 5.3291 -4.2792 27 1 4.3615 4.7657 -5.4968 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.9354 2.4657 0.0301 34 1 3.8560 1.0336 1.0841 35 1 6.0186 1.4685 -0.8997 36 1 5.8016 0.0117 0.0997 37 1 5.8888 -0.1292 -1.6727 38 1 2.1762 1.9762 -2.0505 39 1 -1.5314 4.7552 -1.9053 40 1 -2.6689 6.0421 -4.3079 41 1 -2.4542 6.1722 -6.7373 42 1 -0.7411 4.8567 -7.9115 43 1 0.7797 3.3902 -6.6614 44 1 4.1507 2.0174 -6.0637 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609979464.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:04 Heat of formation + Delta-G solvation = -39.760694 kcal Electronic energy + Delta-G solvation = -27483.125298 eV Core-core repulsion = 23786.366992 eV Total energy + Delta-G solvation = -3696.758306 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -42.48736 -40.61793 -38.92690 -37.77115 -36.56364 -35.38205 -33.35165 -33.01155 -30.94100 -30.44014 -29.59099 -27.17685 -26.72368 -25.10671 -24.28200 -22.80083 -22.23507 -21.40546 -20.93280 -20.12596 -18.42042 -17.72174 -17.52956 -17.04225 -16.74569 -16.51809 -16.33232 -16.17583 -15.79962 -15.48395 -15.33163 -14.99836 -14.76426 -14.64127 -14.31729 -14.05828 -13.89278 -13.66390 -13.53075 -13.17783 -13.10601 -12.76212 -12.51238 -12.41832 -12.29190 -12.21023 -12.05191 -11.93461 -11.81252 -11.54275 -11.29799 -11.07379 -10.60608 -10.43931 -9.98023 -9.03974 -8.81850 -8.60226 -6.59335 -0.02616 0.89764 1.10113 1.18315 1.31531 1.34871 2.00097 2.24438 2.33478 2.47535 2.78822 2.91054 3.14379 3.70541 3.95654 3.99051 4.05325 4.20028 4.29478 4.33605 4.37894 4.42865 4.51604 4.56333 4.59040 4.59656 4.66371 4.70235 4.82240 4.85972 4.93963 5.00007 5.03645 5.12709 5.21521 5.26406 5.37339 5.39329 5.59114 5.69211 5.74860 5.81367 6.00131 6.06470 6.24197 6.39526 6.60841 6.79448 7.22321 7.27706 8.23725 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013843 B = 0.005763 C = 0.004471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.215340 B = 4857.462545 C = 6261.135027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.120 4.120 3 C 0.134 3.866 4 H 0.104 0.896 5 C 0.056 3.944 6 O -0.408 6.408 7 C 0.030 3.970 8 N -0.713 5.713 9 C 0.592 3.408 10 O -0.572 6.572 11 C -0.039 4.039 12 C -0.161 4.161 13 C -0.145 4.145 14 C -0.075 4.075 15 C -0.152 4.152 16 C -0.111 4.111 17 C -0.141 4.141 18 C 0.043 3.957 19 N -0.294 5.294 20 C -0.377 4.377 21 H 0.101 0.899 22 C 0.069 3.931 23 N -0.849 5.849 24 Si 0.913 3.087 25 H -0.231 1.231 26 H -0.282 1.282 27 H -0.274 1.274 28 H 0.018 0.982 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.099 0.901 33 H 0.048 0.952 34 H 0.096 0.904 35 H 0.040 0.960 36 H 0.065 0.935 37 H 0.084 0.916 38 H 0.417 0.583 39 H 0.153 0.847 40 H 0.145 0.855 41 H 0.156 0.844 42 H 0.147 0.853 43 H 0.104 0.896 44 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.362 1.174 4.676 4.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.158 4.158 3 C 0.030 3.970 4 H 0.122 0.878 5 C -0.021 4.021 6 O -0.327 6.327 7 C -0.066 4.066 8 N -0.370 5.370 9 C 0.381 3.619 10 O -0.454 6.454 11 C -0.153 4.153 12 C -0.189 4.189 13 C -0.150 4.150 14 C -0.094 4.094 15 C -0.171 4.171 16 C -0.131 4.131 17 C -0.161 4.161 18 C -0.070 4.070 19 N 0.039 4.961 20 C -0.504 4.504 21 H 0.119 0.881 22 C -0.144 4.144 23 N -0.479 5.479 24 Si 0.736 3.264 25 H -0.154 1.154 26 H -0.207 1.207 27 H -0.200 1.200 28 H 0.038 0.962 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.117 0.883 33 H 0.066 0.934 34 H 0.114 0.886 35 H 0.058 0.942 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.262 0.738 39 H 0.171 0.829 40 H 0.163 0.837 41 H 0.174 0.826 42 H 0.164 0.836 43 H 0.123 0.877 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.438 0.843 5.146 5.233 hybrid contribution 0.981 0.374 -0.507 1.165 sum 1.418 1.217 4.639 5.001 Atomic orbital electron populations 1.21667 0.96187 1.01350 1.00686 1.21756 0.95577 0.95234 1.03225 1.21385 0.93413 0.94413 0.87813 0.87823 1.22903 0.92078 0.95058 0.92084 1.87955 1.22597 1.71623 1.50568 1.22854 0.80020 1.00938 1.02813 1.46738 1.27111 1.47837 1.15337 1.17173 0.80532 0.77745 0.86469 1.90669 1.57953 1.62858 1.33884 1.20693 1.03399 1.05448 0.85731 1.20770 1.00974 1.01585 0.95531 1.18408 1.00069 1.03253 0.93230 1.20643 0.97553 0.96937 0.94234 1.20882 1.00206 1.02021 0.93948 1.21122 0.95257 0.96364 1.00374 1.20309 1.02368 1.02901 0.90549 1.18938 0.96035 1.00220 0.91758 1.40285 1.22914 1.30135 1.02775 1.19002 1.00268 0.97964 1.33126 0.88131 1.25788 0.93476 1.01133 0.93993 1.69656 1.18804 1.35378 1.24046 0.86296 0.78008 0.80616 0.81461 1.15404 1.20711 1.20017 0.96250 0.91480 0.92446 0.92552 0.88293 0.93392 0.88613 0.94168 0.91664 0.89780 0.73833 0.82903 0.83740 0.82602 0.83551 0.87749 0.89565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.53 9.21 71.98 0.66 -3.87 16 2 C -0.12 -3.58 5.34 30.59 0.16 -3.41 16 3 C 0.13 4.38 2.66 44.99 0.12 4.50 16 4 H 0.10 3.35 7.16 -2.39 -0.02 3.33 16 5 C 0.06 1.55 5.75 71.98 0.41 1.96 16 6 O -0.41 -13.11 9.63 -148.98 -1.43 -14.54 16 7 C 0.03 0.72 11.01 113.37 1.25 1.97 16 8 N -0.71 -29.62 4.52 -446.31 -2.02 -31.64 16 9 C 0.59 27.04 6.34 86.51 0.55 27.59 16 10 O -0.57 -26.50 15.90 -4.23 -0.07 -26.57 16 11 C -0.04 -1.90 6.77 39.91 0.27 -1.63 16 12 C -0.16 -7.19 10.55 22.63 0.24 -6.95 16 13 C -0.14 -6.26 6.16 -21.34 -0.13 -6.39 16 14 C -0.08 -2.57 10.06 22.31 0.22 -2.34 16 15 C -0.15 -4.61 9.97 22.03 0.22 -4.40 16 16 C -0.11 -3.80 10.02 22.32 0.22 -3.58 16 17 C -0.14 -6.07 6.93 22.38 0.16 -5.92 16 18 C 0.04 2.06 5.14 39.06 0.20 2.26 16 19 N -0.29 -14.83 2.36 -331.33 -0.78 -15.61 16 20 C -0.38 -19.71 7.95 84.09 0.67 -19.04 16 21 H 0.10 5.62 6.84 -2.91 -0.02 5.60 16 22 C 0.07 3.52 4.98 84.95 0.42 3.94 16 23 N -0.85 -43.83 13.95 21.67 0.30 -43.53 16 24 Si 0.91 41.70 24.37 68.60 1.67 43.37 16 25 H -0.23 -9.79 5.80 99.48 0.58 -9.21 16 26 H -0.28 -14.10 7.11 99.48 0.71 -13.39 16 27 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 28 H 0.02 0.73 6.72 -2.38 -0.02 0.72 16 29 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.06 1.91 7.72 -2.38 -0.02 1.89 16 32 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.42 19.07 4.63 -92.71 -0.43 18.65 16 39 H 0.15 6.12 8.06 -2.91 -0.02 6.10 16 40 H 0.14 3.92 8.06 -2.91 -0.02 3.89 16 41 H 0.16 3.36 8.06 -2.91 -0.02 3.33 16 42 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 43 H 0.10 4.68 6.12 -2.91 -0.02 4.66 16 44 H 0.29 13.90 8.31 -92.71 -0.77 13.13 16 Total: -1.00 -63.06 354.43 3.77 -59.28 By element: Atomic # 1 Polarization: 44.09 SS G_CDS: 0.45 Total: 44.54 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: 5.65 Total: -15.31 kcal Atomic # 7 Polarization: -88.28 SS G_CDS: -2.50 Total: -90.78 kcal Atomic # 8 Polarization: -39.61 SS G_CDS: -1.50 Total: -41.11 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 1.67 Total: 43.37 kcal Total: -63.06 3.77 -59.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609979464.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.523 kcal (2) G-P(sol) polarization free energy of solvation -63.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds