Wall clock time and date at job start Tue Mar 31 2020 11:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31507 * 120.00279 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99507 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.47368 * 90.00025 * 9 7 5 11 11 H 1.48505 * 109.46966 * 209.99896 * 9 7 5 12 12 H 1.48497 * 109.47165 * 329.99743 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21281 * 120.00210 * 0.02562 * 14 13 3 16 16 C 1.50707 * 119.99886 * 180.02562 * 14 13 3 17 17 N 1.46496 * 109.46791 * 180.02562 * 16 14 13 18 18 C 1.36804 * 125.07132 * 264.68918 * 17 16 14 19 19 C 1.34247 * 109.93358 * 179.85645 * 18 17 16 20 20 C 1.46492 * 107.02453 * 0.39621 * 19 18 17 21 21 C 1.39666 * 133.94145 * 179.73080 * 20 19 18 22 22 C 1.38044 * 119.60588 * 180.02562 * 21 20 19 23 23 O 1.35987 * 119.86674 * 180.02562 * 22 21 20 24 24 C 1.42900 * 117.00171 * 179.97438 * 23 22 21 25 25 C 1.39257 * 120.26714 * 359.97438 * 22 21 20 26 26 C 1.37690 * 120.62205 * 0.05106 * 25 22 21 27 27 C 1.37904 * 125.07840 * 84.99880 * 17 16 14 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 32 32 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 33 33 H 0.96999 * 119.99739 * 179.97438 * 8 7 5 34 34 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 35 35 H 1.09006 * 109.46537 * 299.99572 * 16 14 13 36 36 H 1.09001 * 109.47335 * 60.00036 * 16 14 13 37 37 H 1.07998 * 125.03000 * 0.02562 * 18 17 16 38 38 H 1.08005 * 126.48630 * 180.13687 * 19 18 17 39 39 H 1.07998 * 120.19795 * 0.05296 * 21 20 19 40 40 H 1.08993 * 109.46970 * 300.00270 * 24 23 22 41 41 H 1.08998 * 109.47031 * 60.00147 * 24 23 22 42 42 H 1.08996 * 109.46967 * 179.97438 * 24 23 22 43 43 H 1.08003 * 119.69464 * 180.02562 * 25 22 21 44 44 H 1.08000 * 120.00044 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 5.4540 0.8794 1.3358 9 14 3.0963 0.1099 2.5707 10 1 2.8744 -1.3261 2.2646 11 1 3.7942 0.2358 3.8755 12 1 1.7882 0.8093 2.6395 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3392 2.6326 -0.4340 16 6 0.0363 3.3378 -2.6548 17 7 -1.3221 3.8710 -2.5266 18 6 -2.4602 3.2285 -2.9310 19 6 -3.5340 3.9896 -2.6666 20 6 -3.0430 5.2247 -2.0504 21 6 -3.6623 6.3804 -1.5694 22 6 -2.8932 7.3931 -1.0323 23 8 -3.4907 8.5205 -0.5619 24 6 -2.6366 9.5291 -0.0186 25 6 -1.5081 7.2644 -0.9691 26 6 -0.8869 6.1297 -1.4408 27 6 -1.6441 5.0981 -1.9859 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 5.8770 0.4816 2.1128 34 1 2.2720 2.1232 -1.9977 35 1 0.7278 4.1531 -2.8677 36 1 0.0674 2.6131 -3.4685 37 1 -2.4905 2.2523 -3.3919 38 1 -4.5644 3.7405 -2.8733 39 1 -4.7366 6.4811 -1.6170 40 1 -2.0805 9.1188 0.8243 41 1 -1.9385 9.8656 -0.7851 42 1 -3.2391 10.3723 0.3190 43 1 -0.9153 8.0623 -0.5466 44 1 0.1881 6.0407 -1.3872 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613037921.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:57 Heat of formation + Delta-G solvation = -23.915142 kcal Electronic energy + Delta-G solvation = -26280.366516 eV Core-core repulsion = 22584.295325 eV Total energy + Delta-G solvation = -3696.071191 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.34955 -40.75542 -40.05632 -37.23798 -36.61256 -34.44830 -34.00167 -33.13513 -31.31441 -29.62127 -29.58245 -28.28122 -27.15239 -24.62310 -23.82837 -22.80015 -22.18885 -21.41256 -21.02788 -19.31698 -18.73068 -18.19326 -17.80037 -17.40798 -17.19926 -16.57231 -16.54289 -16.22411 -16.04829 -15.27681 -15.17740 -14.90419 -14.54684 -14.29351 -14.22915 -13.96132 -13.86577 -13.71852 -13.61298 -13.56781 -13.07044 -12.88856 -12.83094 -12.78765 -12.61929 -12.41678 -11.89360 -11.62725 -11.51234 -11.40800 -11.26158 -10.93060 -10.87637 -10.40684 -9.80328 -8.91327 -8.41211 -8.37307 -6.45636 0.11956 0.66214 1.23334 1.32602 1.41234 1.63577 1.69497 1.93223 2.22735 2.45567 2.54809 2.91415 2.95511 3.67593 3.83245 3.88038 3.96059 4.04660 4.20302 4.22537 4.26198 4.30256 4.39122 4.42697 4.45132 4.45802 4.68565 4.74373 4.76738 4.81339 4.95829 4.99140 5.09477 5.09950 5.19405 5.28758 5.38790 5.39339 5.49425 5.63079 5.65544 5.85591 6.10760 6.17430 6.39011 6.54936 6.57216 6.85516 7.17716 7.43733 8.74213 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.016669 B = 0.003367 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.313965 B = 8313.973793 C = 9129.338294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.137 4.137 3 C 0.253 3.747 4 H 0.015 0.985 5 C -0.531 4.531 6 H 0.061 0.939 7 C 0.032 3.968 8 N -0.932 5.932 9 Si 0.933 3.067 10 H -0.259 1.259 11 H -0.295 1.295 12 H -0.266 1.266 13 N -0.695 5.695 14 C 0.481 3.519 15 O -0.571 6.571 16 C 0.096 3.904 17 N -0.470 5.470 18 C 0.073 3.927 19 C -0.228 4.228 20 C -0.090 4.090 21 C -0.130 4.130 22 C 0.087 3.913 23 O -0.336 6.336 24 C 0.020 3.980 25 C -0.185 4.185 26 C -0.098 4.098 27 C 0.057 3.943 28 H 0.058 0.942 29 H 0.028 0.972 30 H 0.057 0.943 31 H 0.040 0.960 32 H 0.073 0.927 33 H 0.270 0.730 34 H 0.410 0.590 35 H 0.133 0.867 36 H 0.161 0.839 37 H 0.201 0.799 38 H 0.166 0.834 39 H 0.136 0.864 40 H 0.055 0.945 41 H 0.064 0.936 42 H 0.120 0.880 43 H 0.149 0.851 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.390 9.555 -11.088 21.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.175 4.175 3 C 0.148 3.852 4 H 0.033 0.967 5 C -0.569 4.569 6 H 0.079 0.921 7 C -0.168 4.168 8 N -0.571 5.571 9 Si 0.761 3.239 10 H -0.185 1.185 11 H -0.222 1.222 12 H -0.191 1.191 13 N -0.346 5.346 14 C 0.267 3.733 15 O -0.451 6.451 16 C -0.029 4.029 17 N -0.153 5.153 18 C -0.052 4.052 19 C -0.253 4.253 20 C -0.095 4.095 21 C -0.150 4.150 22 C 0.041 3.959 23 O -0.251 6.251 24 C -0.074 4.074 25 C -0.205 4.205 26 C -0.118 4.118 27 C -0.048 4.048 28 H 0.077 0.923 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.246 0.754 35 H 0.151 0.849 36 H 0.178 0.822 37 H 0.218 0.782 38 H 0.184 0.816 39 H 0.154 0.846 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.138 0.862 43 H 0.167 0.833 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -15.657 9.396 -10.350 20.989 hybrid contribution 0.782 -0.335 0.959 1.282 sum -14.875 9.061 -9.391 19.788 Atomic orbital electron populations 1.21727 0.95267 1.00410 1.01368 1.22200 0.95692 0.98507 1.01125 1.18714 0.93094 0.89570 0.83859 0.96696 1.21296 0.90335 1.38381 1.06919 0.92096 1.25490 0.95608 0.95973 0.99737 1.69960 1.10141 1.46164 1.30820 0.86097 0.79151 0.80025 0.78658 1.18494 1.22226 1.19109 1.45934 1.15606 1.55975 1.17081 1.21540 0.81926 0.79050 0.90824 1.90742 1.52301 1.60142 1.41874 1.21814 0.82903 1.02116 0.96059 1.43549 1.06181 1.13677 1.51898 1.22390 0.83707 0.99012 1.00067 1.21881 0.99562 0.93826 1.09989 1.19224 0.92081 0.95782 1.02399 1.19757 0.99977 0.91734 1.03508 1.18722 0.91200 0.87865 0.98085 1.86019 1.37126 1.26143 1.75767 1.23276 0.96031 0.89831 0.98295 1.21094 0.93514 0.99795 1.06047 1.20023 0.99475 0.92274 1.00024 1.18378 0.94582 0.88596 1.03254 0.92346 0.95289 0.92379 0.94200 0.90791 0.92096 0.75402 0.84948 0.82171 0.78204 0.81608 0.84591 0.92597 0.91771 0.86226 0.83337 0.85635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.84 8.52 71.98 0.61 -4.22 16 2 C -0.14 -5.63 5.11 30.59 0.16 -5.47 16 3 C 0.25 11.32 1.83 44.24 0.08 11.40 16 4 H 0.02 0.79 6.63 -2.39 -0.02 0.77 16 5 C -0.53 -27.79 9.31 25.60 0.24 -27.56 16 6 H 0.06 3.35 7.98 -2.91 -0.02 3.33 16 7 C 0.03 1.76 5.45 84.66 0.46 2.23 16 8 N -0.93 -54.87 13.96 21.45 0.30 -54.57 16 9 Si 0.93 44.49 24.41 68.60 1.67 46.17 16 10 H -0.26 -11.61 6.83 99.48 0.68 -10.93 16 11 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 12 H -0.27 -12.82 6.53 99.48 0.65 -12.17 16 13 N -0.70 -23.90 5.02 -446.11 -2.24 -26.14 16 14 C 0.48 15.43 6.47 87.66 0.57 16.00 16 15 O -0.57 -23.75 13.56 -3.03 -0.04 -23.79 16 16 C 0.10 2.01 6.48 85.64 0.56 2.57 16 17 N -0.47 -11.90 2.27 -519.88 -1.18 -13.09 16 18 C 0.07 1.61 11.27 83.01 0.94 2.54 16 19 C -0.23 -5.47 11.08 23.51 0.26 -5.21 16 20 C -0.09 -2.62 6.37 -20.20 -0.13 -2.75 16 21 C -0.13 -3.67 10.03 22.57 0.23 -3.45 16 22 C 0.09 2.37 6.68 22.47 0.15 2.52 16 23 O -0.34 -8.18 10.49 -93.41 -0.98 -9.16 16 24 C 0.02 0.31 9.81 113.37 1.11 1.42 16 25 C -0.19 -4.81 9.01 22.39 0.20 -4.61 16 26 C -0.10 -2.77 9.98 22.35 0.22 -2.54 16 27 C 0.06 1.68 6.80 38.98 0.27 1.94 16 28 H 0.06 2.05 5.65 -2.39 -0.01 2.04 16 29 H 0.03 1.19 7.85 -2.39 -0.02 1.17 16 30 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 31 H 0.04 1.76 3.22 -2.39 -0.01 1.75 16 32 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 33 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 34 H 0.41 11.64 8.54 -92.71 -0.79 10.85 16 35 H 0.13 2.24 8.14 -2.38 -0.02 2.22 16 36 H 0.16 1.95 8.12 -2.39 -0.02 1.93 16 37 H 0.20 2.77 8.06 -2.91 -0.02 2.74 16 38 H 0.17 3.07 8.06 -2.91 -0.02 3.05 16 39 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 40 H 0.06 0.85 7.65 -2.39 -0.02 0.83 16 41 H 0.06 0.85 7.65 -2.39 -0.02 0.83 16 42 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.15 3.05 6.26 -2.91 -0.02 3.03 16 44 H 0.13 3.27 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -74.58 357.02 3.60 -70.98 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: 0.15 Total: 24.78 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: 5.92 Total: -15.19 kcal Atomic # 7 Polarization: -90.67 SS G_CDS: -3.12 Total: -93.79 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -1.02 Total: -32.95 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.67 Total: 46.17 kcal Total: -74.58 3.60 -70.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613037921.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.064 kcal (2) G-P(sol) polarization free energy of solvation -74.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds