Wall clock time and date at job start Tue Mar 31 2020 11:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47502 * 2 1 4 4 N 1.46498 * 109.47120 * 120.00176 * 2 1 3 5 5 C 1.46504 * 119.99775 * 305.94636 * 4 2 1 6 6 C 1.50708 * 109.46858 * 94.49776 * 5 4 2 7 7 H 1.07994 * 119.99862 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99481 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99475 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 120.00303 * 359.97438 * 8 6 5 11 11 H 1.48505 * 109.46691 * 90.00041 * 10 8 6 12 12 H 1.48491 * 109.47220 * 210.00092 * 10 8 6 13 13 H 1.48497 * 109.47131 * 330.00541 * 10 8 6 14 14 C 1.34779 * 120.00444 * 125.94582 * 4 2 1 15 15 O 1.21550 * 119.99667 * 5.23803 * 14 4 2 16 16 C 1.47589 * 120.00130 * 185.23470 * 14 4 2 17 17 N 1.29013 * 125.85988 * 5.75696 * 16 14 4 18 18 O 1.41395 * 112.88457 * 180.14416 * 17 16 14 19 19 C 1.44199 * 107.65991 * 342.94500 * 18 17 16 20 20 H 1.09003 * 110.97583 * 267.05204 * 19 18 17 21 21 C 1.50706 * 110.97662 * 143.27669 * 19 18 17 22 22 C 1.38231 * 119.99433 * 332.37277 * 21 19 18 23 23 C 1.38238 * 119.99571 * 179.78907 * 22 21 19 24 24 C 1.38239 * 120.00143 * 0.44288 * 23 22 21 25 25 C 1.38237 * 119.99406 * 359.81109 * 24 23 22 26 26 C 1.38228 * 120.00384 * 359.97438 * 25 24 23 27 27 C 1.51691 * 125.86320 * 186.05783 * 16 14 4 28 28 H 1.08999 * 109.47065 * 300.00513 * 1 2 3 29 29 H 1.09002 * 109.47041 * 60.00042 * 1 2 3 30 30 H 1.08994 * 109.47752 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46638 * 239.99635 * 2 1 3 32 32 H 1.08999 * 109.47004 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46938 * 300.00020 * 3 2 1 34 34 H 1.08993 * 109.47030 * 59.99952 * 3 2 1 35 35 H 1.08996 * 109.47206 * 334.49528 * 5 4 2 36 36 H 1.08997 * 109.47008 * 214.49738 * 5 4 2 37 37 H 0.97001 * 119.99258 * 179.97438 * 9 8 6 38 38 H 1.07997 * 120.00724 * 0.02562 * 22 21 19 39 39 H 1.08005 * 120.00227 * 180.27505 * 23 22 21 40 40 H 1.07990 * 120.00181 * 179.83655 * 24 23 22 41 41 H 1.08005 * 119.99225 * 180.02562 * 25 24 23 42 42 H 1.08007 * 119.99879 * 179.97438 * 26 25 24 43 43 H 1.09004 * 110.79094 * 313.65536 * 27 16 14 44 44 H 1.09001 * 110.79202 * 76.93226 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.5602 -0.2705 2.5228 6 6 0.3850 -1.1169 2.9397 7 1 0.0160 -1.8899 2.2821 8 6 -0.2197 -0.9034 4.1603 9 7 -1.2456 -1.6416 4.5239 10 14 0.4182 0.4343 5.2975 11 1 -0.2854 1.7091 5.0055 12 1 0.1704 0.0441 6.7086 13 1 1.8765 0.6132 5.0821 14 6 2.8889 -1.7125 1.0762 15 8 3.3423 -1.9996 -0.0144 16 6 3.2918 -2.4827 2.2690 17 7 2.8062 -2.3459 3.4564 18 8 3.3946 -3.2239 4.3956 19 6 4.0633 -4.2679 3.6592 20 1 3.4081 -5.1278 3.5191 21 6 5.3443 -4.6740 4.3415 22 6 6.0272 -3.7643 5.1269 23 6 7.1999 -4.1381 5.7563 24 6 7.6944 -5.4186 5.5928 25 6 7.0141 -6.3265 4.8030 26 6 5.8391 -5.9542 4.1772 27 6 4.3523 -3.5665 2.3106 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8932 -0.5139 -0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9563 0.8899 35 1 1.2600 0.7767 2.4888 36 1 2.3697 -0.3932 3.2423 37 1 -1.6707 -1.4916 5.3828 38 1 5.6427 -2.7629 5.2521 39 1 7.7312 -3.4288 6.3737 40 1 8.6119 -5.7097 6.0823 41 1 7.4002 -7.3271 4.6756 42 1 5.3078 -6.6635 3.5599 43 1 4.2291 -4.2605 1.4792 44 1 5.3514 -3.1306 2.3040 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726532756.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:00 Heat of formation + Delta-G solvation = 27.994880 kcal Electronic energy + Delta-G solvation = -26878.765521 eV Core-core repulsion = 23184.945318 eV Total energy + Delta-G solvation = -3693.820203 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.45745 -39.36445 -38.42678 -36.04361 -33.43959 -32.55101 -32.27451 -31.21287 -30.95243 -28.73890 -27.91212 -26.71007 -24.17332 -23.73418 -22.65894 -22.56575 -21.01902 -20.15413 -18.22150 -17.21618 -17.02823 -16.93149 -16.18443 -15.80697 -15.15648 -14.86942 -14.78508 -14.37338 -14.07773 -13.76553 -13.46348 -13.45342 -13.31026 -13.01006 -12.72921 -12.63849 -12.48819 -12.21607 -12.01729 -11.81402 -11.70467 -11.58711 -11.18977 -11.08115 -11.03468 -10.87298 -10.66816 -10.31110 -10.15293 -9.99728 -9.59833 -9.47739 -9.24179 -9.00919 -8.79640 -8.55482 -7.91181 -6.08394 -4.05236 1.18482 1.31637 1.60285 3.13536 3.27840 3.37234 3.39853 3.57858 3.59478 3.70290 4.41469 4.49139 4.59449 4.77613 4.83413 4.90305 4.94559 5.05926 5.15653 5.26016 5.33707 5.41698 5.50158 5.53977 5.66493 5.70989 5.80063 5.84011 5.93013 5.98748 6.00678 6.07097 6.22481 6.30196 6.34245 6.41843 6.52011 6.53265 6.58858 6.84486 6.88269 6.95366 7.22257 7.54378 7.63630 7.95521 8.43227 8.62376 8.93560 9.52504 11.04569 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013516 B = 0.004487 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.149236 B = 6238.242665 C = 7460.167913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.135 3.865 3 C -0.160 4.160 4 N -0.564 5.564 5 C 0.200 3.800 6 C -0.512 4.512 7 H 0.074 0.926 8 C 0.086 3.914 9 N -0.892 5.892 10 Si 0.868 3.132 11 H -0.279 1.279 12 H -0.285 1.285 13 H -0.263 1.263 14 C 0.589 3.411 15 O -0.556 6.556 16 C 0.020 3.980 17 N -0.158 5.158 18 O -0.194 6.194 19 C 0.081 3.919 20 H 0.098 0.902 21 C -0.081 4.081 22 C -0.095 4.095 23 C -0.121 4.121 24 C -0.120 4.120 25 C -0.122 4.122 26 C -0.107 4.107 27 C -0.116 4.116 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.032 0.968 36 H 0.050 0.950 37 H 0.264 0.736 38 H 0.129 0.871 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.105 0.895 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.186 -3.281 -2.263 14.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.032 3.968 3 C -0.218 4.218 4 N -0.294 5.294 5 C 0.079 3.921 6 C -0.550 4.550 7 H 0.092 0.908 8 C -0.117 4.117 9 N -0.530 5.530 10 Si 0.695 3.305 11 H -0.205 1.205 12 H -0.210 1.210 13 H -0.188 1.188 14 C 0.375 3.625 15 O -0.435 6.435 16 C -0.174 4.174 17 N 0.097 4.903 18 O -0.214 6.214 19 C 0.022 3.978 20 H 0.115 0.885 21 C -0.082 4.082 22 C -0.113 4.113 23 C -0.139 4.139 24 C -0.138 4.138 25 C -0.140 4.140 26 C -0.125 4.125 27 C -0.156 4.156 28 H 0.094 0.906 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.110 0.890 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.049 0.951 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.147 0.853 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.143 0.857 43 H 0.124 0.876 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 13.559 -2.880 -1.848 13.984 hybrid contribution 0.635 0.036 0.469 0.790 sum 14.194 -2.844 -1.379 14.541 Atomic orbital electron populations 1.22061 0.93828 1.03067 1.02045 1.21026 0.95073 0.92505 0.88150 1.22147 1.01099 0.96283 1.02251 1.48045 1.41234 1.30672 1.09486 1.20149 0.97115 0.96255 0.78569 1.21062 1.11858 1.18781 1.03341 0.90759 1.24695 0.94296 0.95692 0.97043 1.69877 1.21956 1.39414 1.21784 0.86972 0.80180 0.82232 0.81091 1.20471 1.21031 1.18774 1.16865 0.79766 0.80103 0.85778 1.90720 1.56910 1.69391 1.26462 1.25786 0.96828 0.99911 0.94899 1.79494 1.06719 1.04532 0.99532 1.91361 1.68615 1.35134 1.26313 1.22455 0.92023 0.93292 0.90028 0.88455 1.19601 0.95185 0.94446 0.98964 1.21097 0.94375 1.00028 0.95773 1.21169 0.96315 0.96545 0.99883 1.21177 0.99883 0.93859 0.98917 1.21077 0.95492 0.99596 0.97858 1.20938 0.96578 0.95196 0.99759 1.22741 0.98994 0.95702 0.98150 0.90621 0.92841 0.92067 0.89047 0.92766 0.91779 0.91990 0.95063 0.93284 0.92610 0.85335 0.85932 0.86146 0.85916 0.85728 0.87648 0.88189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 8.55 37.16 0.32 -2.30 16 2 C 0.14 2.36 3.21 -67.93 -0.22 2.14 16 3 C -0.16 -2.33 9.27 37.16 0.34 -1.98 16 4 N -0.56 -11.53 2.37 -168.67 -0.40 -11.93 16 5 C 0.20 4.49 2.99 -5.19 -0.02 4.48 16 6 C -0.51 -13.40 7.28 -34.43 -0.25 -13.65 16 7 H 0.07 2.18 8.06 -52.49 -0.42 1.76 16 8 C 0.09 2.37 5.47 -17.82 -0.10 2.27 16 9 N -0.89 -26.38 13.96 55.43 0.77 -25.61 16 10 Si 0.87 20.93 27.47 -169.99 -4.67 16.26 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 14 C 0.59 12.16 7.63 -12.44 -0.10 12.06 16 15 O -0.56 -11.80 16.32 5.32 0.09 -11.72 16 16 C 0.02 0.38 6.92 -79.47 -0.55 -0.17 16 17 N -0.16 -3.44 8.04 35.28 0.28 -3.15 16 18 O -0.19 -3.87 11.24 -11.37 -0.13 -4.00 16 19 C 0.08 1.26 4.02 -26.97 -0.11 1.15 16 20 H 0.10 1.43 8.12 -51.93 -0.42 1.00 16 21 C -0.08 -1.09 5.04 -104.62 -0.53 -1.62 16 22 C -0.09 -1.27 9.39 -39.58 -0.37 -1.64 16 23 C -0.12 -1.35 10.05 -39.58 -0.40 -1.74 16 24 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 25 C -0.12 -1.22 10.05 -39.59 -0.40 -1.61 16 26 C -0.11 -1.20 9.72 -39.59 -0.38 -1.59 16 27 C -0.12 -1.79 6.44 -26.48 -0.17 -1.96 16 28 H 0.07 1.43 7.02 -51.93 -0.36 1.07 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.09 1.59 6.95 -51.93 -0.36 1.23 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.93 6.94 -51.93 -0.36 0.57 16 35 H 0.03 0.68 6.00 -51.93 -0.31 0.37 16 36 H 0.05 1.16 4.92 -51.93 -0.26 0.90 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.13 1.82 7.48 -52.49 -0.39 1.43 16 39 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 40 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 42 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 43 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 44 H 0.10 1.41 7.91 -51.93 -0.41 1.00 16 LS Contribution 360.87 15.07 5.44 5.44 Total: -1.00 -31.10 360.87 -8.21 -39.31 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -6.27 Total: 3.16 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -3.32 Total: -7.76 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 0.66 Total: -40.68 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.04 Total: -15.72 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.67 Total: 16.26 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.10 -8.21 -39.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726532756.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.302 kcal (2) G-P(sol) polarization free energy of solvation -31.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds