Wall clock time and date at job start Tue Mar 31 2020 11:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47502 * 2 1 4 4 N 1.46498 * 109.47120 * 120.00176 * 2 1 3 5 5 C 1.46504 * 119.99775 * 305.94636 * 4 2 1 6 6 C 1.50708 * 109.46858 * 94.49776 * 5 4 2 7 7 H 1.07994 * 119.99862 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99481 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99475 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 120.00303 * 359.97438 * 8 6 5 11 11 H 1.48505 * 109.46691 * 90.00041 * 10 8 6 12 12 H 1.48491 * 109.47220 * 210.00092 * 10 8 6 13 13 H 1.48497 * 109.47131 * 330.00541 * 10 8 6 14 14 C 1.34779 * 120.00444 * 125.94582 * 4 2 1 15 15 O 1.21550 * 119.99667 * 5.23803 * 14 4 2 16 16 C 1.47589 * 120.00130 * 185.23470 * 14 4 2 17 17 N 1.29013 * 125.85988 * 5.75696 * 16 14 4 18 18 O 1.41395 * 112.88457 * 180.14416 * 17 16 14 19 19 C 1.44199 * 107.65991 * 342.94500 * 18 17 16 20 20 H 1.09003 * 110.97583 * 267.05204 * 19 18 17 21 21 C 1.50706 * 110.97662 * 143.27669 * 19 18 17 22 22 C 1.38231 * 119.99433 * 332.37277 * 21 19 18 23 23 C 1.38238 * 119.99571 * 179.78907 * 22 21 19 24 24 C 1.38239 * 120.00143 * 0.44288 * 23 22 21 25 25 C 1.38237 * 119.99406 * 359.81109 * 24 23 22 26 26 C 1.38228 * 120.00384 * 359.97438 * 25 24 23 27 27 C 1.51691 * 125.86320 * 186.05783 * 16 14 4 28 28 H 1.08999 * 109.47065 * 300.00513 * 1 2 3 29 29 H 1.09002 * 109.47041 * 60.00042 * 1 2 3 30 30 H 1.08994 * 109.47752 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46638 * 239.99635 * 2 1 3 32 32 H 1.08999 * 109.47004 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46938 * 300.00020 * 3 2 1 34 34 H 1.08993 * 109.47030 * 59.99952 * 3 2 1 35 35 H 1.08996 * 109.47206 * 334.49528 * 5 4 2 36 36 H 1.08997 * 109.47008 * 214.49738 * 5 4 2 37 37 H 0.97001 * 119.99258 * 179.97438 * 9 8 6 38 38 H 1.07997 * 120.00724 * 0.02562 * 22 21 19 39 39 H 1.08005 * 120.00227 * 180.27505 * 23 22 21 40 40 H 1.07990 * 120.00181 * 179.83655 * 24 23 22 41 41 H 1.08005 * 119.99225 * 180.02562 * 25 24 23 42 42 H 1.08007 * 119.99879 * 179.97438 * 26 25 24 43 43 H 1.09004 * 110.79094 * 313.65536 * 27 16 14 44 44 H 1.09001 * 110.79202 * 76.93226 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.5602 -0.2705 2.5228 6 6 0.3850 -1.1169 2.9397 7 1 0.0160 -1.8899 2.2821 8 6 -0.2197 -0.9034 4.1603 9 7 -1.2456 -1.6416 4.5239 10 14 0.4182 0.4343 5.2975 11 1 -0.2854 1.7091 5.0055 12 1 0.1704 0.0441 6.7086 13 1 1.8765 0.6132 5.0821 14 6 2.8889 -1.7125 1.0762 15 8 3.3423 -1.9996 -0.0144 16 6 3.2918 -2.4827 2.2690 17 7 2.8062 -2.3459 3.4564 18 8 3.3946 -3.2239 4.3956 19 6 4.0633 -4.2679 3.6592 20 1 3.4081 -5.1278 3.5191 21 6 5.3443 -4.6740 4.3415 22 6 6.0272 -3.7643 5.1269 23 6 7.1999 -4.1381 5.7563 24 6 7.6944 -5.4186 5.5928 25 6 7.0141 -6.3265 4.8030 26 6 5.8391 -5.9542 4.1772 27 6 4.3523 -3.5665 2.3106 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8932 -0.5139 -0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9563 0.8899 35 1 1.2600 0.7767 2.4888 36 1 2.3697 -0.3932 3.2423 37 1 -1.6707 -1.4916 5.3828 38 1 5.6427 -2.7629 5.2521 39 1 7.7312 -3.4288 6.3737 40 1 8.6119 -5.7097 6.0823 41 1 7.4002 -7.3271 4.6756 42 1 5.3078 -6.6635 3.5599 43 1 4.2291 -4.2605 1.4792 44 1 5.3514 -3.1306 2.3040 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726532756.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:59 Heat of formation + Delta-G solvation = 10.424499 kcal Electronic energy + Delta-G solvation = -26879.527430 eV Core-core repulsion = 23184.945318 eV Total energy + Delta-G solvation = -3694.582112 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.87343 -40.73530 -39.56648 -37.66296 -35.03205 -34.37014 -33.48291 -32.75447 -31.80977 -29.90998 -29.81938 -28.00590 -25.67684 -24.94212 -24.50952 -23.50501 -22.05901 -21.60157 -19.79645 -19.04061 -18.53147 -18.23264 -17.68432 -16.90197 -16.68351 -16.32299 -16.07213 -15.75083 -15.46827 -15.14746 -14.99256 -14.57453 -14.46093 -14.31308 -14.24857 -14.00289 -13.88893 -13.69163 -13.42353 -13.27448 -13.04668 -12.86140 -12.74245 -12.51181 -12.35040 -12.12203 -11.98919 -11.94497 -11.79182 -11.54580 -11.51801 -11.19744 -10.75028 -10.59475 -9.86149 -9.72951 -9.60528 -8.22076 -6.21562 0.02134 0.30131 0.46351 1.34587 1.40336 1.47979 1.66455 1.99600 2.15227 2.39084 2.78921 3.12735 3.17354 3.29898 3.51434 3.67325 3.86879 3.97634 4.11595 4.14320 4.21579 4.28721 4.30968 4.39190 4.51759 4.52931 4.59245 4.63073 4.75006 4.81837 4.84241 4.93058 4.97178 4.99592 5.05738 5.13070 5.34895 5.45592 5.51734 5.53189 5.57235 5.58610 5.63073 6.05461 6.14075 6.16119 6.44016 6.75289 6.96961 7.39714 8.94663 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013516 B = 0.004487 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.149236 B = 6238.242665 C = 7460.167913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.127 3.873 3 C -0.152 4.152 4 N -0.569 5.569 5 C 0.212 3.788 6 C -0.492 4.492 7 H 0.030 0.970 8 C 0.033 3.967 9 N -0.943 5.943 10 Si 0.923 3.077 11 H -0.260 1.260 12 H -0.292 1.292 13 H -0.251 1.251 14 C 0.583 3.417 15 O -0.562 6.562 16 C 0.018 3.982 17 N -0.201 5.201 18 O -0.212 6.212 19 C 0.080 3.920 20 H 0.101 0.899 21 C -0.099 4.099 22 C -0.117 4.117 23 C -0.126 4.126 24 C -0.116 4.116 25 C -0.119 4.119 26 C -0.111 4.111 27 C -0.107 4.107 28 H 0.055 0.945 29 H 0.091 0.909 30 H 0.031 0.969 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.096 0.904 34 H 0.057 0.943 35 H 0.047 0.953 36 H 0.046 0.954 37 H 0.263 0.737 38 H 0.108 0.892 39 H 0.140 0.860 40 H 0.152 0.848 41 H 0.154 0.846 42 H 0.141 0.859 43 H 0.122 0.878 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.824 -3.020 -2.696 17.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.025 3.975 3 C -0.209 4.209 4 N -0.299 5.299 5 C 0.090 3.910 6 C -0.531 4.531 7 H 0.048 0.952 8 C -0.165 4.165 9 N -0.584 5.584 10 Si 0.748 3.252 11 H -0.185 1.185 12 H -0.218 1.218 13 H -0.174 1.174 14 C 0.369 3.631 15 O -0.442 6.442 16 C -0.176 4.176 17 N 0.054 4.946 18 O -0.233 6.233 19 C 0.022 3.978 20 H 0.118 0.882 21 C -0.100 4.100 22 C -0.136 4.136 23 C -0.144 4.144 24 C -0.134 4.134 25 C -0.137 4.137 26 C -0.129 4.129 27 C -0.146 4.146 28 H 0.074 0.926 29 H 0.110 0.890 30 H 0.051 0.949 31 H 0.111 0.889 32 H 0.075 0.925 33 H 0.114 0.886 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.126 0.874 39 H 0.158 0.842 40 H 0.169 0.831 41 H 0.172 0.828 42 H 0.159 0.841 43 H 0.140 0.860 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 16.208 -2.598 -2.313 16.577 hybrid contribution -0.124 -0.183 0.522 0.567 sum 16.084 -2.781 -1.791 16.420 Atomic orbital electron populations 1.21992 0.93890 1.01420 1.02900 1.21326 0.95008 0.94253 0.86912 1.22097 1.01215 0.93998 1.03639 1.48158 1.41101 1.30966 1.09668 1.19863 0.95384 0.96078 0.79668 1.21048 1.12396 1.17434 1.02203 0.95152 1.25408 0.94474 0.97936 0.98667 1.70022 1.24007 1.41950 1.22441 0.86084 0.80416 0.80202 0.78546 1.18523 1.21825 1.17438 1.17084 0.79816 0.80135 0.86062 1.90701 1.57245 1.69537 1.26677 1.26072 0.97166 1.00239 0.94083 1.79402 1.08301 1.06309 1.00579 1.91304 1.69139 1.36105 1.26715 1.22645 0.93002 0.92228 0.89902 0.88176 1.19519 0.94571 0.95739 1.00196 1.21080 0.95796 0.99414 0.97264 1.21412 0.95556 0.97775 0.99659 1.21585 1.00620 0.93019 0.98145 1.21482 0.94580 1.00977 0.96672 1.21185 0.97284 0.94397 1.00015 1.22791 0.98296 0.94798 0.98722 0.92627 0.89018 0.94939 0.88880 0.92530 0.88572 0.92393 0.93476 0.93623 0.92810 0.87360 0.84223 0.83071 0.82844 0.84085 0.85965 0.86702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.90 8.55 71.98 0.62 -4.29 16 2 C 0.13 4.28 3.21 44.99 0.14 4.43 16 3 C -0.15 -4.04 9.27 71.98 0.67 -3.37 16 4 N -0.57 -23.26 2.37 -805.84 -1.91 -25.17 16 5 C 0.21 9.57 2.99 85.63 0.26 9.82 16 6 C -0.49 -26.63 7.28 25.60 0.19 -26.44 16 7 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 8 C 0.03 1.89 5.47 84.66 0.46 2.35 16 9 N -0.94 -58.02 13.96 21.45 0.30 -57.72 16 10 Si 0.92 43.50 27.47 68.60 1.88 45.39 16 11 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 12 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 13 H -0.25 -11.20 6.54 99.48 0.65 -10.55 16 14 C 0.58 24.15 7.63 86.71 0.66 24.82 16 15 O -0.56 -23.57 16.32 -3.87 -0.06 -23.63 16 16 C 0.02 0.73 6.92 45.76 0.32 1.05 16 17 N -0.20 -9.03 8.04 -42.30 -0.34 -9.37 16 18 O -0.21 -8.75 11.24 -38.33 -0.43 -9.18 16 19 C 0.08 2.53 4.02 30.44 0.12 2.65 16 20 H 0.10 2.99 8.12 -2.39 -0.02 2.97 16 21 C -0.10 -2.63 5.04 -19.87 -0.10 -2.73 16 22 C -0.12 -3.12 9.39 22.27 0.21 -2.91 16 23 C -0.13 -2.59 10.05 22.27 0.22 -2.36 16 24 C -0.12 -1.92 10.05 22.27 0.22 -1.70 16 25 C -0.12 -1.98 10.05 22.27 0.22 -1.75 16 26 C -0.11 -2.28 9.72 22.27 0.22 -2.06 16 27 C -0.11 -3.26 6.44 30.75 0.20 -3.06 16 28 H 0.05 2.10 7.02 -2.39 -0.02 2.08 16 29 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.09 3.13 6.95 -2.38 -0.02 3.12 16 32 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.06 1.59 6.94 -2.39 -0.02 1.58 16 35 H 0.05 2.01 6.00 -2.39 -0.01 1.99 16 36 H 0.05 2.16 4.92 -2.39 -0.01 2.15 16 37 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 38 H 0.11 3.22 7.48 -2.91 -0.02 3.20 16 39 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 40 H 0.15 1.56 8.06 -2.92 -0.02 1.54 16 41 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 42 H 0.14 2.34 8.06 -2.91 -0.02 2.31 16 43 H 0.12 3.28 8.14 -2.38 -0.02 3.27 16 44 H 0.11 3.16 7.91 -2.39 -0.02 3.14 16 Total: -1.00 -70.31 360.87 5.01 -65.31 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.94 Total: 19.94 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: 4.63 Total: -5.56 kcal Atomic # 7 Polarization: -90.31 SS G_CDS: -1.95 Total: -92.27 kcal Atomic # 8 Polarization: -32.32 SS G_CDS: -0.49 Total: -32.81 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 1.88 Total: 45.39 kcal Total: -70.31 5.01 -65.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726532756.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.730 kcal (2) G-P(sol) polarization free energy of solvation -70.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds