Wall clock time and date at job start Tue Mar 31 2020 11:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52993 * 109.47388 * 2 1 4 4 N 1.46503 * 109.47320 * 120.00460 * 2 1 3 5 5 C 1.46501 * 119.99483 * 304.66691 * 4 2 1 6 6 C 1.50702 * 109.47243 * 263.41837 * 5 4 2 7 7 H 1.08002 * 119.99512 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00342 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00047 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99932 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47077 * 90.00016 * 10 8 6 12 12 H 1.48504 * 109.46985 * 209.99809 * 10 8 6 13 13 H 1.48500 * 109.47523 * 330.00150 * 10 8 6 14 14 C 1.34776 * 120.00255 * 124.66282 * 4 2 1 15 15 O 1.21547 * 119.99897 * 4.33991 * 14 4 2 16 16 C 1.47593 * 119.99932 * 184.33416 * 14 4 2 17 17 N 1.29016 * 125.86221 * 354.07250 * 16 14 4 18 18 O 1.41386 * 112.88920 * 179.67633 * 17 16 14 19 19 C 1.44206 * 107.59160 * 17.49209 * 18 17 16 20 20 H 1.09005 * 110.97572 * 92.75402 * 19 18 17 21 21 C 1.50695 * 110.97547 * 216.49847 * 19 18 17 22 22 C 1.38234 * 120.00402 * 38.26951 * 21 19 18 23 23 C 1.38231 * 120.00082 * 179.76420 * 22 21 19 24 24 C 1.38236 * 120.00351 * 0.48894 * 23 22 21 25 25 C 1.38236 * 119.99495 * 359.78534 * 24 23 22 26 26 C 1.38234 * 120.00418 * 359.96374 * 25 24 23 27 27 C 1.51689 * 125.86433 * 174.06983 * 16 14 4 28 28 H 1.09001 * 109.47147 * 299.99789 * 1 2 3 29 29 H 1.09002 * 109.46956 * 59.99752 * 1 2 3 30 30 H 1.08994 * 109.47506 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47147 * 240.00211 * 2 1 3 32 32 H 1.08997 * 109.47446 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47410 * 300.00515 * 3 2 1 34 34 H 1.09002 * 109.47120 * 60.00442 * 3 2 1 35 35 H 1.08997 * 109.47368 * 23.41661 * 5 4 2 36 36 H 1.08999 * 109.47006 * 143.42163 * 5 4 2 37 37 H 0.96995 * 120.00389 * 179.97438 * 9 8 6 38 38 H 1.07997 * 119.99736 * 359.97438 * 22 21 19 39 39 H 1.08005 * 119.99869 * 180.24856 * 23 22 21 40 40 H 1.07995 * 120.00384 * 179.76223 * 24 23 22 41 41 H 1.08002 * 119.99683 * 179.97438 * 25 24 23 42 42 H 1.07998 * 120.00366 * 180.02562 * 26 25 24 43 43 H 1.09002 * 110.78716 * 46.34955 * 27 16 14 44 44 H 1.08997 * 110.79223 * 282.88669 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.5821 -0.2526 2.5243 6 6 2.6176 0.6696 3.1144 7 1 3.5112 0.9061 2.5557 8 6 2.4244 1.2115 4.3674 9 7 1.3361 0.9239 5.0475 10 14 3.7084 2.3540 5.0990 11 1 3.3988 3.7554 4.7175 12 1 3.6961 2.2296 6.5787 13 1 5.0510 1.9855 4.5823 14 6 2.8688 -1.7291 1.0746 15 8 3.2925 -2.0427 -0.0206 16 6 3.2858 -2.4854 2.2715 17 7 2.9949 -2.1881 3.4928 18 8 3.5312 -3.1059 4.4250 19 6 4.5712 -3.8484 3.7566 20 1 5.5438 -3.3800 3.9078 21 6 4.5894 -5.2837 4.2156 22 6 3.4013 -5.9458 4.4619 23 6 3.4180 -7.2638 4.8782 24 6 4.6231 -7.9167 5.0580 25 6 5.8114 -7.2528 4.8171 26 6 5.7947 -5.9364 4.3958 27 6 4.1300 -3.7456 2.2770 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6767 1.9562 0.8900 35 1 0.6321 0.2750 2.4390 36 1 1.4585 -1.1213 3.1710 37 1 1.2003 1.3048 5.9291 38 1 2.4599 -5.4344 4.3258 39 1 2.4895 -7.7824 5.0668 40 1 4.6363 -8.9453 5.3869 41 1 6.7530 -7.7628 4.9579 42 1 6.7231 -5.4178 4.2072 43 1 4.9945 -3.6351 1.6222 44 1 3.5340 -4.6118 1.9898 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726532758.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:04 Heat of formation + Delta-G solvation = 24.478323 kcal Electronic energy + Delta-G solvation = -26776.805283 eV Core-core repulsion = 23082.832590 eV Total energy + Delta-G solvation = -3693.972693 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.41208 -39.28595 -38.37790 -35.91940 -33.40110 -32.60031 -32.23800 -31.03685 -30.96838 -28.70431 -27.22157 -26.70913 -24.13175 -23.70531 -22.93813 -22.63390 -20.98721 -20.09823 -18.20540 -17.19674 -16.95585 -16.50801 -16.09524 -15.75252 -15.11280 -14.87673 -14.65346 -14.38149 -14.24384 -13.72259 -13.46203 -13.30698 -13.23254 -12.94521 -12.72967 -12.58677 -12.31681 -12.17849 -11.77719 -11.67819 -11.55597 -11.51131 -11.17422 -11.07904 -10.98036 -10.84377 -10.77189 -10.44071 -9.96896 -9.82561 -9.60217 -9.48487 -9.19283 -8.99671 -8.79083 -8.38874 -7.82297 -6.04975 -4.07941 1.18793 1.32643 1.66843 3.21597 3.29350 3.37007 3.39541 3.65343 3.67270 3.74590 4.41523 4.54487 4.66575 4.80263 4.85864 4.94739 4.98853 5.06400 5.16017 5.31376 5.40567 5.42796 5.51274 5.61258 5.72045 5.76483 5.82832 5.85448 5.96025 6.03849 6.06919 6.11250 6.30724 6.35182 6.37676 6.42437 6.54548 6.66248 6.76664 6.89171 6.95303 7.37818 7.50120 7.71138 7.86608 8.16432 8.17817 8.69949 8.94598 9.55801 11.03279 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.012893 B = 0.004346 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.167220 B = 6440.832106 C = 7745.780687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.136 3.864 3 C -0.154 4.154 4 N -0.568 5.568 5 C 0.222 3.778 6 C -0.520 4.520 7 H 0.055 0.945 8 C 0.074 3.926 9 N -0.884 5.884 10 Si 0.889 3.111 11 H -0.281 1.281 12 H -0.285 1.285 13 H -0.276 1.276 14 C 0.585 3.415 15 O -0.562 6.562 16 C 0.025 3.975 17 N -0.158 5.158 18 O -0.196 6.196 19 C 0.080 3.920 20 H 0.095 0.905 21 C -0.081 4.081 22 C -0.093 4.093 23 C -0.121 4.121 24 C -0.119 4.119 25 C -0.123 4.123 26 C -0.106 4.106 27 C -0.117 4.117 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.088 0.912 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.076 0.924 35 H 0.041 0.959 36 H 0.067 0.933 37 H 0.263 0.737 38 H 0.127 0.873 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.105 0.895 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.776 -12.445 -3.674 13.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.032 3.968 3 C -0.212 4.212 4 N -0.298 5.298 5 C 0.103 3.897 6 C -0.559 4.559 7 H 0.073 0.927 8 C -0.129 4.129 9 N -0.522 5.522 10 Si 0.718 3.282 11 H -0.208 1.208 12 H -0.211 1.211 13 H -0.201 1.201 14 C 0.370 3.630 15 O -0.442 6.442 16 C -0.169 4.169 17 N 0.096 4.904 18 O -0.215 6.215 19 C 0.021 3.979 20 H 0.113 0.887 21 C -0.082 4.082 22 C -0.111 4.111 23 C -0.139 4.139 24 C -0.138 4.138 25 C -0.141 4.141 26 C -0.124 4.124 27 C -0.157 4.157 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.106 0.894 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.059 0.941 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.145 0.855 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.123 0.877 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.294 -11.883 -3.196 12.739 hybrid contribution 1.256 0.182 0.246 1.293 sum 4.550 -11.701 -2.950 12.897 Atomic orbital electron populations 1.22141 0.95180 1.01917 1.02532 1.20972 0.93812 0.93662 0.88325 1.22080 1.01442 0.95513 1.02188 1.48380 1.42623 1.28585 1.10180 1.19967 0.96280 0.97229 0.76253 1.21223 1.05530 1.27598 1.01577 0.92687 1.24779 0.95322 0.96332 0.96488 1.69899 1.25855 1.43716 1.12705 0.86639 0.82130 0.80964 0.78516 1.20750 1.21115 1.20103 1.16910 0.79834 0.80559 0.85648 1.90707 1.57224 1.70015 1.26204 1.25870 1.00679 0.96415 0.93983 1.79540 1.07554 1.03733 0.99554 1.91396 1.49405 1.49362 1.31329 1.22465 0.94385 0.90207 0.90826 0.88724 1.19601 0.93973 0.93822 1.00786 1.21073 0.98202 0.94290 0.97526 1.21164 0.98146 0.94708 0.99894 1.21177 0.92654 0.99873 1.00048 1.21080 0.98221 0.94632 1.00172 1.20972 0.97149 0.95036 0.99227 1.22761 1.00534 0.95738 0.96655 0.91244 0.91989 0.92840 0.89360 0.92755 0.92910 0.90468 0.94120 0.91590 0.92762 0.85503 0.85886 0.86132 0.85944 0.85780 0.87688 0.88196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 9.10 37.15 0.34 -2.14 16 2 C 0.14 2.43 3.24 -67.94 -0.22 2.21 16 3 C -0.15 -2.67 8.92 37.15 0.33 -2.34 16 4 N -0.57 -11.95 2.38 -168.68 -0.40 -12.35 16 5 C 0.22 5.29 4.12 -5.19 -0.02 5.27 16 6 C -0.52 -13.55 7.49 -34.44 -0.26 -13.81 16 7 H 0.05 1.48 7.81 -52.49 -0.41 1.07 16 8 C 0.07 2.00 5.46 -17.82 -0.10 1.90 16 9 N -0.88 -24.81 13.29 55.43 0.74 -24.08 16 10 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 14 C 0.58 12.37 7.61 -12.44 -0.09 12.28 16 15 O -0.56 -12.25 16.31 5.32 0.09 -12.17 16 16 C 0.02 0.49 7.00 -79.47 -0.56 -0.07 16 17 N -0.16 -3.49 8.27 35.28 0.29 -3.20 16 18 O -0.20 -3.94 11.59 -11.37 -0.13 -4.07 16 19 C 0.08 1.25 4.00 -26.97 -0.11 1.14 16 20 H 0.10 1.38 8.05 -51.93 -0.42 0.96 16 21 C -0.08 -1.10 5.03 -104.62 -0.53 -1.62 16 22 C -0.09 -1.24 9.20 -39.59 -0.36 -1.60 16 23 C -0.12 -1.35 10.05 -39.58 -0.40 -1.74 16 24 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 25 C -0.12 -1.24 10.05 -39.58 -0.40 -1.63 16 26 C -0.11 -1.21 9.69 -39.58 -0.38 -1.59 16 27 C -0.12 -1.83 6.42 -26.48 -0.17 -2.00 16 28 H 0.07 1.17 6.50 -51.93 -0.34 0.83 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.09 1.58 6.93 -51.93 -0.36 1.22 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 1.49 7.29 -51.93 -0.38 1.11 16 35 H 0.04 1.01 6.20 -51.93 -0.32 0.68 16 36 H 0.07 1.70 5.34 -51.93 -0.28 1.42 16 37 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 38 H 0.13 1.79 7.78 -52.49 -0.41 1.38 16 39 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 40 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 41 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 42 H 0.12 1.19 8.05 -52.49 -0.42 0.76 16 43 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 44 H 0.10 1.43 7.77 -51.93 -0.40 1.03 16 LS Contribution 365.03 15.07 5.50 5.50 Total: -1.00 -30.23 365.03 -8.52 -38.75 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -6.25 Total: 2.67 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -3.32 Total: -7.34 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: 0.63 Total: -39.62 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.04 Total: -16.24 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.23 -8.52 -38.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726532758.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.225 kcal (2) G-P(sol) polarization free energy of solvation -30.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds