Wall clock time and date at job start Tue Mar 31 2020 11:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52993 * 109.47388 * 2 1 4 4 N 1.46503 * 109.47320 * 120.00460 * 2 1 3 5 5 C 1.46501 * 119.99483 * 304.66691 * 4 2 1 6 6 C 1.50702 * 109.47243 * 263.41837 * 5 4 2 7 7 H 1.08002 * 119.99512 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00342 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00047 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99932 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47077 * 90.00016 * 10 8 6 12 12 H 1.48504 * 109.46985 * 209.99809 * 10 8 6 13 13 H 1.48500 * 109.47523 * 330.00150 * 10 8 6 14 14 C 1.34776 * 120.00255 * 124.66282 * 4 2 1 15 15 O 1.21547 * 119.99897 * 4.33991 * 14 4 2 16 16 C 1.47593 * 119.99932 * 184.33416 * 14 4 2 17 17 N 1.29016 * 125.86221 * 354.07250 * 16 14 4 18 18 O 1.41386 * 112.88920 * 179.67633 * 17 16 14 19 19 C 1.44206 * 107.59160 * 17.49209 * 18 17 16 20 20 H 1.09005 * 110.97572 * 92.75402 * 19 18 17 21 21 C 1.50695 * 110.97547 * 216.49847 * 19 18 17 22 22 C 1.38234 * 120.00402 * 38.26951 * 21 19 18 23 23 C 1.38231 * 120.00082 * 179.76420 * 22 21 19 24 24 C 1.38236 * 120.00351 * 0.48894 * 23 22 21 25 25 C 1.38236 * 119.99495 * 359.78534 * 24 23 22 26 26 C 1.38234 * 120.00418 * 359.96374 * 25 24 23 27 27 C 1.51689 * 125.86433 * 174.06983 * 16 14 4 28 28 H 1.09001 * 109.47147 * 299.99789 * 1 2 3 29 29 H 1.09002 * 109.46956 * 59.99752 * 1 2 3 30 30 H 1.08994 * 109.47506 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47147 * 240.00211 * 2 1 3 32 32 H 1.08997 * 109.47446 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47410 * 300.00515 * 3 2 1 34 34 H 1.09002 * 109.47120 * 60.00442 * 3 2 1 35 35 H 1.08997 * 109.47368 * 23.41661 * 5 4 2 36 36 H 1.08999 * 109.47006 * 143.42163 * 5 4 2 37 37 H 0.96995 * 120.00389 * 179.97438 * 9 8 6 38 38 H 1.07997 * 119.99736 * 359.97438 * 22 21 19 39 39 H 1.08005 * 119.99869 * 180.24856 * 23 22 21 40 40 H 1.07995 * 120.00384 * 179.76223 * 24 23 22 41 41 H 1.08002 * 119.99683 * 179.97438 * 25 24 23 42 42 H 1.07998 * 120.00366 * 180.02562 * 26 25 24 43 43 H 1.09002 * 110.78716 * 46.34955 * 27 16 14 44 44 H 1.08997 * 110.79223 * 282.88669 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.5821 -0.2526 2.5243 6 6 2.6176 0.6696 3.1144 7 1 3.5112 0.9061 2.5557 8 6 2.4244 1.2115 4.3674 9 7 1.3361 0.9239 5.0475 10 14 3.7084 2.3540 5.0990 11 1 3.3988 3.7554 4.7175 12 1 3.6961 2.2296 6.5787 13 1 5.0510 1.9855 4.5823 14 6 2.8688 -1.7291 1.0746 15 8 3.2925 -2.0427 -0.0206 16 6 3.2858 -2.4854 2.2715 17 7 2.9949 -2.1881 3.4928 18 8 3.5312 -3.1059 4.4250 19 6 4.5712 -3.8484 3.7566 20 1 5.5438 -3.3800 3.9078 21 6 4.5894 -5.2837 4.2156 22 6 3.4013 -5.9458 4.4619 23 6 3.4180 -7.2638 4.8782 24 6 4.6231 -7.9167 5.0580 25 6 5.8114 -7.2528 4.8171 26 6 5.7947 -5.9364 4.3958 27 6 4.1300 -3.7456 2.2770 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6767 1.9562 0.8900 35 1 0.6321 0.2750 2.4390 36 1 1.4585 -1.1213 3.1710 37 1 1.2003 1.3048 5.9291 38 1 2.4599 -5.4344 4.3258 39 1 2.4895 -7.7824 5.0668 40 1 4.6363 -8.9453 5.3869 41 1 6.7530 -7.7628 4.9579 42 1 6.7231 -5.4178 4.2072 43 1 4.9945 -3.6351 1.6222 44 1 3.5340 -4.6118 1.9898 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726532758.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:04 Heat of formation + Delta-G solvation = 8.692022 kcal Electronic energy + Delta-G solvation = -26777.489829 eV Core-core repulsion = 23082.832590 eV Total energy + Delta-G solvation = -3694.657238 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.83420 -40.68050 -39.54866 -37.57688 -35.04707 -34.35208 -33.46070 -32.60501 -31.82423 -29.87767 -29.17623 -28.05997 -25.66881 -24.94898 -24.84434 -23.50260 -22.03382 -21.58271 -19.81022 -18.64871 -18.46092 -18.12051 -17.64509 -16.86458 -16.66603 -16.32776 -16.20347 -15.81541 -15.42644 -15.08708 -14.81780 -14.45185 -14.43044 -14.26990 -14.18676 -13.97577 -13.84402 -13.47868 -13.38096 -13.21622 -12.99532 -12.83674 -12.78709 -12.63309 -12.31205 -12.22353 -12.07929 -11.96414 -11.67281 -11.51051 -11.43262 -11.14941 -10.65510 -10.43486 -9.85610 -9.73716 -9.57160 -8.12121 -6.19833 0.06083 0.29884 0.46807 1.37347 1.40074 1.47389 1.73602 2.03031 2.21712 2.44605 2.79917 3.21027 3.22291 3.35016 3.56255 3.69457 3.83754 3.99635 4.12978 4.14440 4.23351 4.28859 4.33249 4.41624 4.52414 4.59868 4.62414 4.65855 4.76153 4.81766 4.91854 4.97949 5.00007 5.12936 5.13158 5.26763 5.45797 5.47803 5.52050 5.58528 5.61041 5.71147 5.80330 6.05826 6.14046 6.20869 6.39518 6.85066 7.05211 7.46674 8.95532 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.012893 B = 0.004346 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.167220 B = 6440.832106 C = 7745.780687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.126 3.874 3 C -0.146 4.146 4 N -0.571 5.571 5 C 0.239 3.761 6 C -0.515 4.515 7 H 0.043 0.957 8 C 0.032 3.968 9 N -0.913 5.913 10 Si 0.941 3.059 11 H -0.271 1.271 12 H -0.286 1.286 13 H -0.278 1.278 14 C 0.579 3.421 15 O -0.569 6.569 16 C 0.022 3.978 17 N -0.200 5.200 18 O -0.214 6.214 19 C 0.080 3.920 20 H 0.103 0.897 21 C -0.100 4.100 22 C -0.115 4.115 23 C -0.127 4.127 24 C -0.115 4.115 25 C -0.120 4.120 26 C -0.110 4.110 27 C -0.108 4.108 28 H 0.051 0.949 29 H 0.096 0.904 30 H 0.053 0.947 31 H 0.094 0.906 32 H 0.038 0.962 33 H 0.090 0.910 34 H 0.052 0.948 35 H 0.030 0.970 36 H 0.050 0.950 37 H 0.262 0.738 38 H 0.106 0.894 39 H 0.140 0.860 40 H 0.152 0.848 41 H 0.154 0.846 42 H 0.142 0.858 43 H 0.122 0.878 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.135 -13.832 -4.304 15.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.024 3.976 3 C -0.204 4.204 4 N -0.301 5.301 5 C 0.119 3.881 6 C -0.554 4.554 7 H 0.061 0.939 8 C -0.169 4.169 9 N -0.553 5.553 10 Si 0.767 3.233 11 H -0.196 1.196 12 H -0.212 1.212 13 H -0.203 1.203 14 C 0.365 3.635 15 O -0.449 6.449 16 C -0.172 4.172 17 N 0.055 4.945 18 O -0.234 6.234 19 C 0.022 3.978 20 H 0.121 0.879 21 C -0.101 4.101 22 C -0.134 4.134 23 C -0.145 4.145 24 C -0.133 4.133 25 C -0.138 4.138 26 C -0.128 4.128 27 C -0.147 4.147 28 H 0.070 0.930 29 H 0.115 0.885 30 H 0.073 0.927 31 H 0.112 0.888 32 H 0.057 0.943 33 H 0.108 0.892 34 H 0.071 0.929 35 H 0.048 0.952 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.124 0.876 39 H 0.158 0.842 40 H 0.170 0.830 41 H 0.172 0.828 42 H 0.159 0.841 43 H 0.141 0.859 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.654 -13.259 -3.850 14.570 hybrid contribution 0.865 0.505 0.403 1.080 sum 5.518 -12.754 -3.447 14.318 Atomic orbital electron populations 1.22082 0.93197 1.02279 1.03351 1.21289 0.95466 0.93715 0.87156 1.22008 1.00384 0.95187 1.02816 1.48437 1.42638 1.28864 1.10173 1.19539 0.95221 0.96002 0.77343 1.21296 1.05202 1.27478 1.01436 0.93904 1.25387 0.96815 0.97696 0.96969 1.69993 1.27325 1.44978 1.12986 0.85829 0.79939 0.79854 0.77639 1.19633 1.21150 1.20324 1.17127 0.79712 0.80628 0.86016 1.90686 1.57483 1.70262 1.26459 1.26107 1.00487 0.97450 0.93176 1.79477 1.09002 1.05430 1.00621 1.91339 1.50774 1.49650 1.31659 1.22678 0.93434 0.91357 0.90335 0.87911 1.19529 0.95102 0.92673 1.02785 1.21058 0.97447 0.95551 0.99309 1.21408 0.99780 0.93850 0.99413 1.21587 0.91964 1.01189 0.98532 1.21489 0.99680 0.93996 0.98634 1.21226 0.96851 0.95873 0.98843 1.22807 1.00583 0.94063 0.97263 0.92978 0.88501 0.92740 0.88794 0.94265 0.89155 0.92866 0.95177 0.93258 0.92848 0.87600 0.84219 0.83040 0.82834 0.84064 0.85948 0.86992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.54 9.10 71.98 0.65 -3.89 16 2 C 0.13 4.45 3.24 44.99 0.15 4.59 16 3 C -0.15 -4.95 8.92 71.98 0.64 -4.31 16 4 N -0.57 -24.45 2.38 -805.87 -1.91 -26.37 16 5 C 0.24 11.80 4.12 85.63 0.35 12.15 16 6 C -0.52 -27.51 7.49 25.60 0.19 -27.31 16 7 H 0.04 2.35 7.81 -2.91 -0.02 2.33 16 8 C 0.03 1.74 5.46 84.65 0.46 2.20 16 9 N -0.91 -52.54 13.29 21.45 0.28 -52.26 16 10 Si 0.94 44.22 29.54 68.60 2.03 46.24 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 12 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 13 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 14 C 0.58 24.79 7.61 86.71 0.66 25.45 16 15 O -0.57 -24.60 16.31 -3.86 -0.06 -24.66 16 16 C 0.02 0.89 7.00 45.76 0.32 1.21 16 17 N -0.20 -9.16 8.27 -42.30 -0.35 -9.51 16 18 O -0.21 -8.95 11.59 -38.31 -0.44 -9.40 16 19 C 0.08 2.52 4.00 30.44 0.12 2.64 16 20 H 0.10 2.97 8.05 -2.38 -0.02 2.95 16 21 C -0.10 -2.67 5.03 -19.87 -0.10 -2.77 16 22 C -0.12 -3.10 9.20 22.27 0.20 -2.89 16 23 C -0.13 -2.64 10.05 22.27 0.22 -2.41 16 24 C -0.11 -1.93 10.05 22.27 0.22 -1.70 16 25 C -0.12 -2.01 10.05 22.27 0.22 -1.79 16 26 C -0.11 -2.28 9.69 22.27 0.22 -2.07 16 27 C -0.11 -3.36 6.42 30.76 0.20 -3.17 16 28 H 0.05 1.75 6.50 -2.39 -0.02 1.73 16 29 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.09 3.24 6.93 -2.39 -0.02 3.23 16 32 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.05 2.05 7.29 -2.39 -0.02 2.04 16 35 H 0.03 1.55 6.20 -2.39 -0.01 1.53 16 36 H 0.05 2.67 5.34 -2.39 -0.01 2.65 16 37 H 0.26 14.49 8.31 -92.71 -0.77 13.71 16 38 H 0.11 3.19 7.78 -2.91 -0.02 3.16 16 39 H 0.14 2.32 8.06 -2.91 -0.02 2.29 16 40 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 41 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 42 H 0.14 2.35 8.05 -2.91 -0.02 2.33 16 43 H 0.12 3.35 8.14 -2.39 -0.02 3.34 16 44 H 0.11 3.20 7.77 -2.39 -0.02 3.19 16 Total: -1.00 -66.64 365.03 5.28 -61.36 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 1.00 Total: 18.66 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: 4.74 Total: -4.07 kcal Atomic # 7 Polarization: -86.16 SS G_CDS: -1.98 Total: -88.14 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -0.51 Total: -34.05 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -66.64 5.28 -61.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726532758.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.052 kcal (2) G-P(sol) polarization free energy of solvation -66.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds