Wall clock time and date at job start Tue Mar 31 2020 11:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47094 * 2 1 4 4 H 1.09008 * 109.47139 * 55.00344 * 3 2 1 5 5 C 1.53007 * 109.47164 * 175.00005 * 3 2 1 6 6 N 1.46498 * 109.47252 * 295.00253 * 3 2 1 7 7 O 1.41600 * 120.00172 * 116.95628 * 6 3 2 8 8 C 1.42900 * 113.99879 * 88.67081 * 7 6 3 9 9 C 1.34778 * 120.00056 * 296.95596 * 6 3 2 10 10 O 1.21673 * 119.99876 * 5.20686 * 9 6 3 11 11 C 1.46887 * 120.00319 * 185.21084 * 9 6 3 12 12 C 1.36126 * 125.43257 * 354.13450 * 11 9 6 13 13 C 1.41704 * 107.74617 * 179.90431 * 12 11 9 14 14 C 1.40025 * 133.35290 * 180.11824 * 13 12 11 15 15 C 1.36574 * 119.83190 * 180.29861 * 14 13 12 16 16 C 1.38856 * 120.59818 * 359.95718 * 15 14 13 17 17 C 1.37841 * 120.63951 * 0.02562 * 16 15 14 18 18 C 1.39093 * 119.80882 * 359.97438 * 17 16 15 19 19 N 1.37838 * 133.16060 * 180.02562 * 18 17 16 20 20 C 1.36886 * 125.62171 * 359.97438 * 19 18 17 21 21 H 1.07999 * 120.00268 * 143.84995 * 20 19 18 22 22 C 1.39011 * 120.00315 * 323.85764 * 20 19 18 23 23 N 1.31354 * 119.99829 * 339.13840 * 22 20 19 24 24 Si 1.86793 * 120.00504 * 159.14078 * 22 20 19 25 25 H 1.48500 * 109.47293 * 94.96577 * 24 22 20 26 26 H 1.48504 * 109.47507 * 214.96576 * 24 22 20 27 27 H 1.48505 * 109.46958 * 334.96727 * 24 22 20 28 28 H 1.09000 * 109.47503 * 59.99584 * 1 2 3 29 29 H 1.09001 * 109.47146 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46910 * 300.00207 * 1 2 3 31 31 H 1.08998 * 109.46595 * 239.99804 * 2 1 3 32 32 H 1.08999 * 109.47045 * 120.00142 * 2 1 3 33 33 H 1.09000 * 109.46531 * 60.00125 * 5 3 2 34 34 H 1.09001 * 109.47213 * 179.97438 * 5 3 2 35 35 H 1.08998 * 109.46553 * 300.00381 * 5 3 2 36 36 H 1.09003 * 109.47384 * 60.02216 * 8 7 6 37 37 H 1.09007 * 109.46807 * 180.02562 * 8 7 6 38 38 H 1.08999 * 109.47142 * 300.01519 * 8 7 6 39 39 H 1.07994 * 126.12827 * 0.03223 * 12 11 9 40 40 H 1.07994 * 120.08148 * 0.29773 * 14 13 12 41 41 H 1.08000 * 119.70317 * 179.97438 * 15 14 13 42 42 H 1.08001 * 119.68118 * 180.02562 * 16 15 14 43 43 H 1.07995 * 120.09947 * 179.97438 * 17 16 15 44 44 H 0.96995 * 119.99887 * 185.07854 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5649 1.4443 0.1257 6 7 1.6524 2.0975 -1.2518 7 8 0.7797 3.2122 -1.2268 8 6 1.4455 4.4686 -1.0850 9 6 2.1265 1.6390 -2.4271 10 8 2.7991 0.6256 -2.4581 11 6 1.8314 2.3629 -3.6707 12 6 1.0027 3.4372 -3.7809 13 6 0.9933 3.8378 -5.1401 14 6 0.3399 4.8624 -5.8357 15 6 0.5292 4.9980 -7.1815 16 6 1.3658 4.1285 -7.8686 17 6 2.0202 3.1124 -7.2058 18 6 1.8431 2.9544 -5.8353 19 7 2.3469 2.0588 -4.9166 20 6 3.2134 1.0358 -5.1928 21 1 3.9794 0.7694 -4.4795 22 6 3.1077 0.3399 -6.3915 23 7 1.9799 0.3586 -7.0645 24 14 4.5695 -0.6220 -7.0452 25 1 4.4585 -2.0407 -6.6205 26 1 4.5867 -0.5493 -8.5283 27 1 5.8254 -0.0409 -6.5064 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.9994 0.9053 -0.7161 34 1 3.9283 2.4720 0.1253 35 1 3.8532 0.9569 1.0571 36 1 2.1289 4.6142 -1.9217 37 1 0.7082 5.2714 -1.0741 38 1 2.0073 4.4787 -0.1510 39 1 0.4527 3.9022 -2.9762 40 1 -0.3121 5.5437 -5.3094 41 1 0.0239 5.7888 -7.7160 42 1 1.5051 4.2496 -8.9328 43 1 2.6685 2.4409 -7.7490 44 1 1.8817 -0.1854 -7.8616 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764816725.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:31 Heat of formation + Delta-G solvation = 39.352972 kcal Electronic energy + Delta-G solvation = -27841.497537 eV Core-core repulsion = 24148.169858 eV Total energy + Delta-G solvation = -3693.327680 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.49201 -39.19137 -36.92944 -35.94081 -35.05085 -33.57726 -31.16344 -30.63063 -29.69145 -28.92265 -27.92128 -26.07992 -24.83137 -23.95239 -22.86372 -21.46364 -20.53022 -19.95157 -19.11447 -18.09960 -17.07531 -15.88004 -15.71459 -15.40981 -14.92883 -14.86458 -14.27421 -14.19030 -14.02518 -13.83998 -13.68899 -13.28281 -12.99047 -12.84324 -12.80138 -12.59159 -12.31686 -11.86326 -11.68983 -11.63166 -11.51949 -11.28912 -11.12191 -11.07342 -10.80800 -10.73602 -10.65566 -10.55860 -10.24024 -10.11912 -9.69632 -9.07042 -8.93920 -8.58630 -8.55233 -7.09426 -6.77745 -6.53834 -4.31722 1.86029 2.21378 2.82359 3.04868 3.06539 3.12267 3.13417 3.83552 4.18885 4.31330 4.75266 4.89601 5.02167 5.15895 5.19437 5.23726 5.38032 5.50748 5.54708 5.61559 5.75760 5.79801 5.81571 5.88449 5.96676 6.02484 6.03978 6.17097 6.22820 6.41192 6.47576 6.50942 6.56748 6.63644 6.78636 6.88312 6.96598 7.11024 7.19415 7.23914 7.54109 7.65049 7.72588 7.88817 8.05457 8.17234 8.45417 8.70214 8.95172 9.38138 10.24016 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.011721 B = 0.006192 C = 0.004471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.366424 B = 4520.835225 C = 6260.831406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.142 4.142 3 C 0.157 3.843 4 H 0.088 0.912 5 C -0.176 4.176 6 N -0.473 5.473 7 O -0.137 6.137 8 C -0.010 4.010 9 C 0.601 3.399 10 O -0.512 6.512 11 C -0.036 4.036 12 C -0.198 4.198 13 C -0.132 4.132 14 C -0.090 4.090 15 C -0.158 4.158 16 C -0.156 4.156 17 C -0.048 4.048 18 C 0.081 3.919 19 N -0.228 5.228 20 C -0.334 4.334 21 H 0.118 0.882 22 C 0.051 3.949 23 N -0.816 5.816 24 Si 0.929 3.071 25 H -0.270 1.270 26 H -0.275 1.275 27 H -0.261 1.261 28 H 0.060 0.940 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.101 0.899 38 H 0.044 0.956 39 H 0.143 0.857 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.103 0.897 43 H 0.112 0.888 44 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.312 4.742 9.794 10.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.180 4.180 3 C 0.056 3.944 4 H 0.106 0.894 5 C -0.234 4.234 6 N -0.253 5.253 7 O -0.141 6.141 8 C -0.108 4.108 9 C 0.395 3.605 10 O -0.388 6.388 11 C -0.152 4.152 12 C -0.225 4.225 13 C -0.136 4.136 14 C -0.109 4.109 15 C -0.177 4.177 16 C -0.177 4.177 17 C -0.067 4.067 18 C -0.035 4.035 19 N 0.113 4.887 20 C -0.463 4.463 21 H 0.135 0.865 22 C -0.162 4.162 23 N -0.445 5.445 24 Si 0.752 3.248 25 H -0.195 1.195 26 H -0.200 1.200 27 H -0.185 1.185 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.109 0.891 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.120 0.880 38 H 0.063 0.937 39 H 0.161 0.839 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.130 0.870 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.013 3.804 9.500 10.233 hybrid contribution 0.459 -0.278 -0.350 0.640 sum 0.472 3.526 9.150 9.817 Atomic orbital electron populations 1.21703 0.95543 1.01183 1.01977 1.21991 0.96485 0.95636 1.03859 1.21252 0.94877 0.93479 0.84828 0.89436 1.22326 0.95085 1.02349 1.03611 1.49942 1.48473 1.21024 1.05908 1.90638 1.19188 1.08804 1.95475 1.23379 1.00295 0.86027 1.01110 1.17310 0.77955 0.83559 0.81648 1.90751 1.38893 1.24317 1.84830 1.19451 1.05588 1.02918 0.87288 1.20985 1.05244 1.00731 0.95535 1.18041 1.02985 0.98867 0.93723 1.20004 0.99820 0.97321 0.93784 1.20242 1.02245 1.00876 0.94329 1.20514 1.01126 0.97795 0.98259 1.20122 0.99300 0.95993 0.91304 1.18105 1.01851 0.91967 0.91558 1.39948 1.27599 1.18057 1.03135 1.19989 1.10703 1.11228 1.04355 0.86471 1.25660 0.97600 0.96734 0.96188 1.70006 1.22951 1.34807 1.16703 0.85879 0.80957 0.79645 0.78279 1.19531 1.19965 1.18484 0.92060 0.93092 0.93346 0.89076 0.91255 0.89699 0.92863 0.91514 0.91710 0.88049 0.93709 0.83935 0.88048 0.88138 0.87875 0.86958 0.90786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.80 37.16 0.36 -1.66 16 2 C -0.14 -2.02 5.32 -26.73 -0.14 -2.17 16 3 C 0.16 2.23 2.93 -67.93 -0.20 2.03 16 4 H 0.09 1.05 8.13 -51.92 -0.42 0.62 16 5 C -0.18 -2.37 9.07 37.16 0.34 -2.03 16 6 N -0.47 -8.27 2.35 -55.05 -0.13 -8.40 16 7 O -0.14 -2.21 8.93 -11.47 -0.10 -2.31 16 8 C -0.01 -0.13 9.87 101.05 1.00 0.87 16 9 C 0.60 13.23 7.12 -12.76 -0.09 13.14 16 10 O -0.51 -12.14 11.19 5.21 0.06 -12.08 16 11 C -0.04 -0.88 6.75 -82.25 -0.56 -1.43 16 12 C -0.20 -4.42 8.44 -39.02 -0.33 -4.75 16 13 C -0.13 -3.11 6.16 -106.89 -0.66 -3.77 16 14 C -0.09 -1.86 10.06 -39.51 -0.40 -2.26 16 15 C -0.16 -3.11 9.97 -39.95 -0.40 -3.51 16 16 C -0.16 -3.29 10.02 -39.50 -0.40 -3.69 16 17 C -0.05 -1.16 8.55 -39.41 -0.34 -1.50 16 18 C 0.08 2.09 6.10 -83.83 -0.51 1.58 16 19 N -0.23 -6.11 2.84 -56.08 -0.16 -6.27 16 20 C -0.33 -9.06 8.81 -15.01 -0.13 -9.19 16 21 H 0.12 3.20 6.93 -52.49 -0.36 2.84 16 22 C 0.05 1.32 4.33 -17.47 -0.08 1.24 16 23 N -0.82 -21.79 10.90 55.50 0.60 -21.18 16 24 Si 0.93 19.68 29.60 -169.99 -5.03 14.65 16 25 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 26 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 27 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 28 H 0.06 1.00 7.75 -51.93 -0.40 0.60 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 1.62 6.10 -51.93 -0.32 1.30 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 1.41 6.13 -51.93 -0.32 1.09 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.96 6.95 -51.93 -0.36 0.59 16 37 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.14 2.76 4.54 -52.49 -0.24 2.52 16 40 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 41 H 0.10 1.65 8.06 -52.49 -0.42 1.22 16 42 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 43 H 0.11 2.81 6.31 -52.49 -0.33 2.47 16 44 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 352.77 15.07 5.32 5.32 Total: -1.00 -30.19 352.77 -8.09 -38.28 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -6.12 Total: 9.08 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: -2.52 Total: -17.09 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 0.32 Total: -35.85 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.04 Total: -14.39 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.03 Total: 14.65 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.19 -8.09 -38.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764816725.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.633 kcal (2) G-P(sol) polarization free energy of solvation -30.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds