Wall clock time and date at job start Tue Mar 31 2020 11:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47094 * 2 1 4 4 H 1.09008 * 109.47139 * 55.00344 * 3 2 1 5 5 C 1.53007 * 109.47164 * 175.00005 * 3 2 1 6 6 N 1.46498 * 109.47252 * 295.00253 * 3 2 1 7 7 O 1.41600 * 120.00172 * 116.95628 * 6 3 2 8 8 C 1.42900 * 113.99879 * 88.67081 * 7 6 3 9 9 C 1.34778 * 120.00056 * 296.95596 * 6 3 2 10 10 O 1.21673 * 119.99876 * 5.20686 * 9 6 3 11 11 C 1.46887 * 120.00319 * 185.21084 * 9 6 3 12 12 C 1.36126 * 125.43257 * 354.13450 * 11 9 6 13 13 C 1.41704 * 107.74617 * 179.90431 * 12 11 9 14 14 C 1.40025 * 133.35290 * 180.11824 * 13 12 11 15 15 C 1.36574 * 119.83190 * 180.29861 * 14 13 12 16 16 C 1.38856 * 120.59818 * 359.95718 * 15 14 13 17 17 C 1.37841 * 120.63951 * 0.02562 * 16 15 14 18 18 C 1.39093 * 119.80882 * 359.97438 * 17 16 15 19 19 N 1.37838 * 133.16060 * 180.02562 * 18 17 16 20 20 C 1.36886 * 125.62171 * 359.97438 * 19 18 17 21 21 H 1.07999 * 120.00268 * 143.84995 * 20 19 18 22 22 C 1.39011 * 120.00315 * 323.85764 * 20 19 18 23 23 N 1.31354 * 119.99829 * 339.13840 * 22 20 19 24 24 Si 1.86793 * 120.00504 * 159.14078 * 22 20 19 25 25 H 1.48500 * 109.47293 * 94.96577 * 24 22 20 26 26 H 1.48504 * 109.47507 * 214.96576 * 24 22 20 27 27 H 1.48505 * 109.46958 * 334.96727 * 24 22 20 28 28 H 1.09000 * 109.47503 * 59.99584 * 1 2 3 29 29 H 1.09001 * 109.47146 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46910 * 300.00207 * 1 2 3 31 31 H 1.08998 * 109.46595 * 239.99804 * 2 1 3 32 32 H 1.08999 * 109.47045 * 120.00142 * 2 1 3 33 33 H 1.09000 * 109.46531 * 60.00125 * 5 3 2 34 34 H 1.09001 * 109.47213 * 179.97438 * 5 3 2 35 35 H 1.08998 * 109.46553 * 300.00381 * 5 3 2 36 36 H 1.09003 * 109.47384 * 60.02216 * 8 7 6 37 37 H 1.09007 * 109.46807 * 180.02562 * 8 7 6 38 38 H 1.08999 * 109.47142 * 300.01519 * 8 7 6 39 39 H 1.07994 * 126.12827 * 0.03223 * 12 11 9 40 40 H 1.07994 * 120.08148 * 0.29773 * 14 13 12 41 41 H 1.08000 * 119.70317 * 179.97438 * 15 14 13 42 42 H 1.08001 * 119.68118 * 180.02562 * 16 15 14 43 43 H 1.07995 * 120.09947 * 179.97438 * 17 16 15 44 44 H 0.96995 * 119.99887 * 185.07854 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5649 1.4443 0.1257 6 7 1.6524 2.0975 -1.2518 7 8 0.7797 3.2122 -1.2268 8 6 1.4455 4.4686 -1.0850 9 6 2.1265 1.6390 -2.4271 10 8 2.7991 0.6256 -2.4581 11 6 1.8314 2.3629 -3.6707 12 6 1.0027 3.4372 -3.7809 13 6 0.9933 3.8378 -5.1401 14 6 0.3399 4.8624 -5.8357 15 6 0.5292 4.9980 -7.1815 16 6 1.3658 4.1285 -7.8686 17 6 2.0202 3.1124 -7.2058 18 6 1.8431 2.9544 -5.8353 19 7 2.3469 2.0588 -4.9166 20 6 3.2134 1.0358 -5.1928 21 1 3.9794 0.7694 -4.4795 22 6 3.1077 0.3399 -6.3915 23 7 1.9799 0.3586 -7.0645 24 14 4.5695 -0.6220 -7.0452 25 1 4.4585 -2.0407 -6.6205 26 1 4.5867 -0.5493 -8.5283 27 1 5.8254 -0.0409 -6.5064 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.9994 0.9053 -0.7161 34 1 3.9283 2.4720 0.1253 35 1 3.8532 0.9569 1.0571 36 1 2.1289 4.6142 -1.9217 37 1 0.7082 5.2714 -1.0741 38 1 2.0073 4.4787 -0.1510 39 1 0.4527 3.9022 -2.9762 40 1 -0.3121 5.5437 -5.3094 41 1 0.0239 5.7888 -7.7160 42 1 1.5051 4.2496 -8.9328 43 1 2.6685 2.4409 -7.7490 44 1 1.8817 -0.1854 -7.8616 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764816725.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:30 Heat of formation + Delta-G solvation = 23.452037 kcal Electronic energy + Delta-G solvation = -27842.187054 eV Core-core repulsion = 24148.169858 eV Total energy + Delta-G solvation = -3694.017196 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.21489 -40.71676 -38.37467 -37.56337 -36.39515 -35.42658 -32.62880 -32.31787 -30.92906 -30.66274 -29.52926 -27.30702 -26.65719 -25.33372 -24.22161 -23.01690 -22.15509 -21.68630 -20.52986 -19.84513 -18.68240 -17.38612 -17.28283 -16.96629 -16.62546 -16.46041 -15.87279 -15.67910 -15.48046 -15.09517 -14.87131 -14.75189 -14.64428 -14.56693 -14.20860 -14.13369 -13.68620 -13.45638 -13.26481 -13.07714 -12.85737 -12.82584 -12.69264 -12.38849 -12.21985 -12.18888 -12.04896 -11.92992 -11.84771 -11.52458 -11.29267 -10.91877 -10.55305 -10.32273 -9.98485 -8.92565 -8.61485 -8.33310 -6.30558 0.14231 0.89494 1.11096 1.28532 1.34432 1.42082 1.43804 2.09046 2.44321 2.73008 2.89421 3.35311 3.41478 3.86655 4.00756 4.08665 4.19570 4.31242 4.43548 4.44213 4.45458 4.52791 4.59796 4.65612 4.70329 4.77075 4.80213 4.85020 4.90081 4.94047 5.07208 5.08321 5.14284 5.25254 5.29023 5.30711 5.41543 5.43062 5.48264 5.58368 5.76614 5.93318 5.98664 6.29006 6.31722 6.56513 6.59276 6.97809 7.21664 7.50399 8.36177 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.011721 B = 0.006192 C = 0.004471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.366424 B = 4520.835225 C = 6260.831406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.140 4.140 3 C 0.151 3.849 4 H 0.125 0.875 5 C -0.170 4.170 6 N -0.462 5.462 7 O -0.146 6.146 8 C -0.015 4.015 9 C 0.594 3.406 10 O -0.542 6.542 11 C -0.066 4.066 12 C -0.179 4.179 13 C -0.157 4.157 14 C -0.085 4.085 15 C -0.156 4.156 16 C -0.140 4.140 17 C -0.089 4.089 18 C 0.055 3.945 19 N -0.261 5.261 20 C -0.365 4.365 21 H 0.098 0.902 22 C 0.014 3.986 23 N -0.852 5.852 24 Si 0.992 3.008 25 H -0.267 1.267 26 H -0.260 1.260 27 H -0.260 1.260 28 H 0.027 0.973 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.048 0.952 32 H 0.102 0.898 33 H 0.045 0.955 34 H 0.058 0.942 35 H 0.100 0.900 36 H 0.040 0.960 37 H 0.137 0.863 38 H 0.068 0.932 39 H 0.173 0.827 40 H 0.141 0.859 41 H 0.147 0.853 42 H 0.132 0.868 43 H 0.092 0.908 44 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.604 7.044 11.289 13.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.178 4.178 3 C 0.052 3.948 4 H 0.143 0.857 5 C -0.228 4.228 6 N -0.241 5.241 7 O -0.150 6.150 8 C -0.112 4.112 9 C 0.387 3.613 10 O -0.421 6.421 11 C -0.181 4.181 12 C -0.206 4.206 13 C -0.162 4.162 14 C -0.104 4.104 15 C -0.175 4.175 16 C -0.161 4.161 17 C -0.109 4.109 18 C -0.060 4.060 19 N 0.078 4.922 20 C -0.493 4.493 21 H 0.115 0.885 22 C -0.195 4.195 23 N -0.481 5.481 24 Si 0.812 3.188 25 H -0.192 1.192 26 H -0.185 1.185 27 H -0.184 1.184 28 H 0.046 0.954 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.067 0.933 32 H 0.121 0.879 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.119 0.881 36 H 0.059 0.941 37 H 0.155 0.845 38 H 0.087 0.913 39 H 0.190 0.810 40 H 0.159 0.841 41 H 0.164 0.836 42 H 0.150 0.850 43 H 0.110 0.890 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.293 6.130 11.037 12.691 hybrid contribution 0.726 -0.775 -0.712 1.278 sum -0.568 5.355 10.325 11.645 Atomic orbital electron populations 1.21661 0.95083 1.01541 1.01612 1.21971 0.96835 0.95687 1.03335 1.21619 0.95522 0.93574 0.84074 0.85721 1.22275 0.94390 1.02512 1.03620 1.49837 1.47178 1.21580 1.05524 1.90593 1.19376 1.09496 1.95548 1.23625 1.01182 0.85072 1.01334 1.17264 0.78247 0.83309 0.82489 1.90731 1.40312 1.25426 1.85664 1.20203 1.06289 1.03797 0.87818 1.21362 1.03854 0.99408 0.95987 1.18543 1.03534 0.99857 0.94277 1.20473 0.99060 0.96449 0.94390 1.20730 1.01335 1.01186 0.94241 1.20969 0.99293 0.96063 0.99734 1.20193 1.01579 0.97900 0.91214 1.18676 1.02387 0.92542 0.92444 1.40139 1.29070 1.18861 1.04174 1.19921 1.11497 1.12794 1.05093 0.88484 1.26468 0.99937 0.97288 0.95816 1.70081 1.24652 1.36071 1.17342 0.84969 0.77564 0.78069 0.78155 1.19222 1.18459 1.18421 0.95365 0.92534 0.90513 0.93343 0.87949 0.93580 0.92270 0.88125 0.94088 0.84503 0.91321 0.80977 0.84136 0.83569 0.84983 0.88992 0.90599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 9.80 71.98 0.71 -3.05 16 2 C -0.14 -3.90 5.32 30.59 0.16 -3.74 16 3 C 0.15 4.08 2.93 44.99 0.13 4.21 16 4 H 0.12 2.48 8.13 -2.38 -0.02 2.46 16 5 C -0.17 -4.43 9.07 71.98 0.65 -3.78 16 6 N -0.46 -16.09 2.35 -446.29 -1.05 -17.14 16 7 O -0.15 -4.45 8.93 -38.78 -0.35 -4.79 16 8 C -0.02 -0.34 9.87 113.37 1.12 0.78 16 9 C 0.59 27.47 7.12 86.51 0.62 28.08 16 10 O -0.54 -27.76 11.19 -4.26 -0.05 -27.81 16 11 C -0.07 -3.36 6.75 39.91 0.27 -3.09 16 12 C -0.18 -8.03 8.44 22.63 0.19 -7.84 16 13 C -0.16 -7.42 6.16 -21.33 -0.13 -7.55 16 14 C -0.09 -3.26 10.06 22.31 0.22 -3.04 16 15 C -0.16 -5.61 9.97 22.03 0.22 -5.39 16 16 C -0.14 -5.72 10.02 22.32 0.22 -5.50 16 17 C -0.09 -4.47 8.55 22.38 0.19 -4.28 16 18 C 0.05 2.94 6.10 39.06 0.24 3.18 16 19 N -0.26 -14.88 2.84 -331.34 -0.94 -15.83 16 20 C -0.37 -21.38 8.81 84.09 0.74 -20.64 16 21 H 0.10 5.84 6.93 -2.91 -0.02 5.82 16 22 C 0.01 0.76 4.33 84.95 0.37 1.12 16 23 N -0.85 -48.14 10.90 21.67 0.24 -47.91 16 24 Si 0.99 42.74 29.60 68.60 2.03 44.77 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 26 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 27 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 28 H 0.03 0.91 7.75 -2.39 -0.02 0.90 16 29 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 31 H 0.05 1.80 6.10 -2.39 -0.01 1.78 16 32 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.05 1.59 6.13 -2.39 -0.01 1.57 16 34 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.04 1.15 6.95 -2.39 -0.02 1.14 16 37 H 0.14 2.18 8.14 -2.38 -0.02 2.16 16 38 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.17 6.40 4.54 -2.91 -0.01 6.39 16 40 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 41 H 0.15 3.96 8.06 -2.91 -0.02 3.93 16 42 H 0.13 4.51 8.06 -2.91 -0.02 4.48 16 43 H 0.09 4.88 6.31 -2.91 -0.02 4.86 16 44 H 0.28 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -73.30 352.77 6.81 -66.48 By element: Atomic # 1 Polarization: 31.74 SS G_CDS: 1.01 Total: 32.74 kcal Atomic # 6 Polarization: -36.44 SS G_CDS: 5.92 Total: -30.52 kcal Atomic # 7 Polarization: -79.12 SS G_CDS: -1.76 Total: -80.87 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -0.39 Total: -32.60 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -73.30 6.81 -66.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764816725.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.934 kcal (2) G-P(sol) polarization free energy of solvation -73.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds