Wall clock time and date at job start Tue Mar 31 2020 11:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47137 * 2 1 4 4 H 1.09001 * 109.47205 * 301.26858 * 3 2 1 5 5 C 1.52998 * 109.47254 * 181.26368 * 3 2 1 6 6 N 1.46505 * 109.46762 * 61.26606 * 3 2 1 7 7 O 1.41599 * 119.99736 * 239.73500 * 6 3 2 8 8 C 1.42901 * 114.00341 * 275.42116 * 7 6 3 9 9 C 1.34779 * 119.99824 * 59.73875 * 6 3 2 10 10 O 1.21661 * 120.00346 * 4.60433 * 9 6 3 11 11 C 1.46891 * 119.99595 * 184.60228 * 9 6 3 12 12 C 1.36125 * 125.43919 * 356.63361 * 11 9 6 13 13 C 1.41698 * 107.74924 * 180.27637 * 12 11 9 14 14 C 1.40016 * 133.35530 * 179.77714 * 13 12 11 15 15 C 1.36575 * 119.83432 * 179.97438 * 14 13 12 16 16 C 1.38847 * 120.60195 * 359.95617 * 15 14 13 17 17 C 1.37850 * 120.62986 * 0.02562 * 16 15 14 18 18 C 1.39083 * 119.81826 * 0.02562 * 17 16 15 19 19 N 1.37827 * 133.16723 * 180.02562 * 18 17 16 20 20 C 1.36896 * 125.62013 * 359.97047 * 19 18 17 21 21 H 1.07996 * 120.00328 * 225.98352 * 20 19 18 22 22 C 1.39015 * 119.99831 * 45.98468 * 20 19 18 23 23 N 1.31339 * 120.00249 * 188.32772 * 22 20 19 24 24 Si 1.86802 * 119.99652 * 8.32942 * 22 20 19 25 25 H 1.48504 * 109.46992 * 263.95715 * 24 22 20 26 26 H 1.48496 * 109.47514 * 23.96093 * 24 22 20 27 27 H 1.48502 * 109.46967 * 143.96234 * 24 22 20 28 28 H 1.08999 * 109.46802 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47024 * 299.99439 * 1 2 3 30 30 H 1.08996 * 109.47235 * 60.00290 * 1 2 3 31 31 H 1.09006 * 109.47227 * 240.00391 * 2 1 3 32 32 H 1.08996 * 109.47686 * 120.00336 * 2 1 3 33 33 H 1.09005 * 109.46965 * 66.89727 * 5 3 2 34 34 H 1.09009 * 109.47171 * 186.89207 * 5 3 2 35 35 H 1.08998 * 109.47519 * 306.89502 * 5 3 2 36 36 H 1.08993 * 109.47233 * 185.10877 * 8 7 6 37 37 H 1.09004 * 109.47061 * 305.11578 * 8 7 6 38 38 H 1.09004 * 109.46919 * 65.10931 * 8 7 6 39 39 H 1.07997 * 126.12605 * 0.02562 * 12 11 9 40 40 H 1.08007 * 120.08065 * 359.97438 * 14 13 12 41 41 H 1.07998 * 119.69780 * 179.97438 * 15 14 13 42 42 H 1.08004 * 119.68558 * 180.02562 * 16 15 14 43 43 H 1.08008 * 120.09119 * 179.97438 * 17 16 15 44 44 H 0.97002 * 120.00483 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6582 1.9629 -0.8784 5 6 3.5696 1.4426 -0.0318 6 7 1.5767 2.1242 1.2112 7 8 0.7647 3.2796 1.1067 8 6 1.4995 4.4921 0.9276 9 6 1.9233 1.6516 2.4249 10 8 2.6884 0.7100 2.5153 11 6 1.3773 2.2734 3.6385 12 6 0.5680 3.3676 3.6691 13 6 0.2717 3.6479 5.0261 14 6 -0.4935 4.6351 5.6588 15 6 -0.5946 4.6475 7.0208 16 6 0.0545 3.6882 7.7865 17 6 0.8133 2.7061 7.1865 18 6 0.9320 2.6735 5.8011 19 7 1.6007 1.8392 4.9314 20 6 2.3642 0.7608 5.2895 21 1 3.3358 0.6143 4.8415 22 6 1.8886 -0.1459 6.2299 23 7 2.6798 -1.0854 6.6950 24 14 0.1242 -0.0280 6.8320 25 1 0.0855 0.7369 8.1043 26 1 -0.7017 0.6663 5.8117 27 1 -0.4137 -1.3934 7.0587 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 3.9132 1.0464 -0.9874 34 1 3.9355 2.4621 0.0914 35 1 3.9500 0.8197 0.7777 36 1 0.8135 5.3388 0.9472 37 1 2.2291 4.5968 1.7307 38 1 2.0164 4.4654 -0.0317 39 1 0.2180 3.9248 2.8128 40 1 -1.0025 5.3849 5.0713 41 1 -1.1850 5.4102 7.5065 42 1 -0.0359 3.7118 8.8625 43 1 1.3148 1.9645 7.7906 44 1 2.3481 -1.7179 7.3514 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764816726.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:35 Heat of formation + Delta-G solvation = 46.823354 kcal Electronic energy + Delta-G solvation = -27991.632981 eV Core-core repulsion = 24298.629241 eV Total energy + Delta-G solvation = -3693.003740 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.81119 -39.37781 -37.02981 -36.20796 -35.13074 -33.47896 -31.46589 -31.07921 -29.82145 -29.22358 -28.13319 -26.22279 -24.83638 -24.00949 -23.01988 -21.61889 -20.75898 -20.11698 -19.20203 -18.29868 -17.29480 -16.08212 -15.87765 -15.56441 -15.28101 -14.84242 -14.54823 -14.19132 -14.00447 -13.94016 -13.74830 -13.46218 -13.21706 -13.03943 -12.95101 -12.83576 -12.56603 -12.22911 -11.84432 -11.77408 -11.60993 -11.34639 -11.15341 -11.00208 -10.83269 -10.76859 -10.71793 -10.49586 -10.25101 -10.06599 -9.81374 -9.38297 -9.01193 -8.65456 -8.61408 -7.30914 -6.91237 -6.74137 -4.45354 1.57500 2.11289 2.51175 2.80175 3.07264 3.18943 3.30441 3.91704 3.97790 4.18186 4.60806 4.68078 4.84281 4.95640 5.15230 5.18804 5.27757 5.38224 5.46711 5.51478 5.60693 5.65046 5.71193 5.74122 5.79278 5.84563 5.94501 6.02384 6.15436 6.21738 6.25333 6.41393 6.44047 6.46994 6.52640 6.64085 6.77424 6.81471 6.86987 7.23546 7.32314 7.35989 7.60835 7.67853 7.87396 7.95335 8.31155 8.65816 8.82871 9.12421 10.29889 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013505 B = 0.006239 C = 0.004862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.745221 B = 4486.847857 C = 5757.108024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.142 4.142 3 C 0.156 3.844 4 H 0.088 0.912 5 C -0.174 4.174 6 N -0.473 5.473 7 O -0.138 6.138 8 C -0.007 4.007 9 C 0.598 3.402 10 O -0.497 6.497 11 C -0.016 4.016 12 C -0.184 4.184 13 C -0.127 4.127 14 C -0.077 4.077 15 C -0.160 4.160 16 C -0.131 4.131 17 C -0.110 4.110 18 C 0.055 3.945 19 N -0.256 5.256 20 C -0.329 4.329 21 H 0.129 0.871 22 C 0.077 3.923 23 N -0.835 5.835 24 Si 0.875 3.125 25 H -0.249 1.249 26 H -0.252 1.252 27 H -0.286 1.286 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.058 0.942 38 H 0.046 0.954 39 H 0.149 0.851 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.112 0.888 43 H 0.121 0.879 44 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.830 8.197 -10.244 13.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.180 4.180 3 C 0.055 3.945 4 H 0.107 0.893 5 C -0.232 4.232 6 N -0.255 5.255 7 O -0.141 6.141 8 C -0.105 4.105 9 C 0.391 3.609 10 O -0.371 6.371 11 C -0.132 4.132 12 C -0.211 4.211 13 C -0.132 4.132 14 C -0.096 4.096 15 C -0.179 4.179 16 C -0.152 4.152 17 C -0.129 4.129 18 C -0.059 4.059 19 N 0.082 4.918 20 C -0.457 4.457 21 H 0.146 0.854 22 C -0.135 4.135 23 N -0.465 5.465 24 Si 0.700 3.300 25 H -0.174 1.174 26 H -0.175 1.175 27 H -0.212 1.212 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.104 0.896 36 H 0.121 0.879 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.166 0.834 40 H 0.127 0.873 41 H 0.126 0.874 42 H 0.130 0.870 43 H 0.138 0.862 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.306 7.123 -9.994 12.710 hybrid contribution -0.640 0.165 0.313 0.731 sum -3.947 7.288 -9.681 12.744 Atomic orbital electron populations 1.21700 0.95450 1.01291 1.02024 1.21971 0.96593 0.95496 1.03911 1.21283 0.94261 0.93076 0.85893 0.89341 1.22350 0.94675 1.02758 1.03461 1.49973 1.52521 1.17631 1.05403 1.90618 1.20236 1.08373 1.94914 1.23332 0.99270 0.87128 1.00807 1.17243 0.79789 0.82642 0.81238 1.90822 1.33879 1.27918 1.84494 1.19642 1.06637 1.01711 0.85206 1.21087 1.04140 1.00405 0.95420 1.18058 1.03580 0.98130 0.93432 1.20142 0.98348 0.97103 0.93999 1.20337 1.03472 1.00364 0.93761 1.20545 0.99961 0.96055 0.98631 1.20280 1.01121 0.99864 0.91674 1.18403 1.02404 0.93385 0.91684 1.40201 1.31137 1.18669 1.01803 1.19561 1.01417 1.00021 1.24664 0.85412 1.25511 0.99082 0.94085 0.94812 1.69612 1.36215 1.14853 1.25816 0.86952 0.83677 0.77699 0.81703 1.17401 1.17550 1.21249 0.93000 0.92100 0.93242 0.90988 0.89257 0.91682 0.92846 0.89572 0.87944 0.92298 0.93517 0.83358 0.87302 0.87359 0.87026 0.86168 0.90496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.77 37.16 0.36 -1.68 16 2 C -0.14 -2.01 5.25 -26.73 -0.14 -2.15 16 3 C 0.16 2.16 2.94 -67.93 -0.20 1.96 16 4 H 0.09 1.01 8.12 -51.93 -0.42 0.59 16 5 C -0.17 -2.32 9.00 37.16 0.33 -1.98 16 6 N -0.47 -7.97 2.20 -55.05 -0.12 -8.09 16 7 O -0.14 -2.07 8.51 -11.47 -0.10 -2.17 16 8 C -0.01 -0.08 10.17 101.05 1.03 0.94 16 9 C 0.60 12.83 7.14 -12.76 -0.09 12.74 16 10 O -0.50 -11.83 11.42 5.22 0.06 -11.77 16 11 C -0.02 -0.38 6.76 -82.25 -0.56 -0.94 16 12 C -0.18 -3.84 9.44 -39.02 -0.37 -4.21 16 13 C -0.13 -2.79 6.16 -106.89 -0.66 -3.44 16 14 C -0.08 -1.43 10.06 -39.52 -0.40 -1.83 16 15 C -0.16 -2.84 9.97 -39.96 -0.40 -3.24 16 16 C -0.13 -2.54 10.02 -39.50 -0.40 -2.94 16 17 C -0.11 -2.51 6.62 -39.41 -0.26 -2.77 16 18 C 0.06 1.35 4.85 -83.84 -0.41 0.94 16 19 N -0.26 -6.66 2.43 -56.08 -0.14 -6.79 16 20 C -0.33 -9.27 9.12 -15.00 -0.14 -9.40 16 21 H 0.13 3.91 7.35 -52.49 -0.39 3.52 16 22 C 0.08 2.14 5.24 -17.47 -0.09 2.05 16 23 N -0.83 -23.49 13.95 55.50 0.77 -22.71 16 24 Si 0.87 21.57 23.59 -169.99 -4.01 17.56 16 25 H -0.25 -5.72 5.62 56.52 0.32 -5.40 16 26 H -0.25 -6.59 6.73 56.52 0.38 -6.21 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 1.00 7.64 -51.93 -0.40 0.61 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.09 1.58 6.27 -51.93 -0.33 1.26 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 35 H 0.09 1.42 6.27 -51.93 -0.33 1.09 16 36 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.76 8.02 -51.93 -0.42 0.35 16 38 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.15 2.63 4.74 -52.49 -0.25 2.39 16 40 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 41 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 42 H 0.11 1.83 8.06 -52.48 -0.42 1.41 16 43 H 0.12 2.82 5.50 -52.48 -0.29 2.54 16 44 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 347.47 15.07 5.24 5.24 Total: -1.00 -30.88 347.47 -6.95 -37.83 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -6.28 Total: 6.85 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: -2.38 Total: -15.95 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.52 Total: -37.59 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -0.04 Total: -13.93 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.01 Total: 17.56 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.88 -6.95 -37.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764816726.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.650 kcal (2) G-P(sol) polarization free energy of solvation -30.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds