Wall clock time and date at job start Tue Mar 31 2020 11:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47137 * 2 1 4 4 H 1.09001 * 109.47205 * 301.26858 * 3 2 1 5 5 C 1.52998 * 109.47254 * 181.26368 * 3 2 1 6 6 N 1.46505 * 109.46762 * 61.26606 * 3 2 1 7 7 O 1.41599 * 119.99736 * 239.73500 * 6 3 2 8 8 C 1.42901 * 114.00341 * 275.42116 * 7 6 3 9 9 C 1.34779 * 119.99824 * 59.73875 * 6 3 2 10 10 O 1.21661 * 120.00346 * 4.60433 * 9 6 3 11 11 C 1.46891 * 119.99595 * 184.60228 * 9 6 3 12 12 C 1.36125 * 125.43919 * 356.63361 * 11 9 6 13 13 C 1.41698 * 107.74924 * 180.27637 * 12 11 9 14 14 C 1.40016 * 133.35530 * 179.77714 * 13 12 11 15 15 C 1.36575 * 119.83432 * 179.97438 * 14 13 12 16 16 C 1.38847 * 120.60195 * 359.95617 * 15 14 13 17 17 C 1.37850 * 120.62986 * 0.02562 * 16 15 14 18 18 C 1.39083 * 119.81826 * 0.02562 * 17 16 15 19 19 N 1.37827 * 133.16723 * 180.02562 * 18 17 16 20 20 C 1.36896 * 125.62013 * 359.97047 * 19 18 17 21 21 H 1.07996 * 120.00328 * 225.98352 * 20 19 18 22 22 C 1.39015 * 119.99831 * 45.98468 * 20 19 18 23 23 N 1.31339 * 120.00249 * 188.32772 * 22 20 19 24 24 Si 1.86802 * 119.99652 * 8.32942 * 22 20 19 25 25 H 1.48504 * 109.46992 * 263.95715 * 24 22 20 26 26 H 1.48496 * 109.47514 * 23.96093 * 24 22 20 27 27 H 1.48502 * 109.46967 * 143.96234 * 24 22 20 28 28 H 1.08999 * 109.46802 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47024 * 299.99439 * 1 2 3 30 30 H 1.08996 * 109.47235 * 60.00290 * 1 2 3 31 31 H 1.09006 * 109.47227 * 240.00391 * 2 1 3 32 32 H 1.08996 * 109.47686 * 120.00336 * 2 1 3 33 33 H 1.09005 * 109.46965 * 66.89727 * 5 3 2 34 34 H 1.09009 * 109.47171 * 186.89207 * 5 3 2 35 35 H 1.08998 * 109.47519 * 306.89502 * 5 3 2 36 36 H 1.08993 * 109.47233 * 185.10877 * 8 7 6 37 37 H 1.09004 * 109.47061 * 305.11578 * 8 7 6 38 38 H 1.09004 * 109.46919 * 65.10931 * 8 7 6 39 39 H 1.07997 * 126.12605 * 0.02562 * 12 11 9 40 40 H 1.08007 * 120.08065 * 359.97438 * 14 13 12 41 41 H 1.07998 * 119.69780 * 179.97438 * 15 14 13 42 42 H 1.08004 * 119.68558 * 180.02562 * 16 15 14 43 43 H 1.08008 * 120.09119 * 179.97438 * 17 16 15 44 44 H 0.97002 * 120.00483 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6582 1.9629 -0.8784 5 6 3.5696 1.4426 -0.0318 6 7 1.5767 2.1242 1.2112 7 8 0.7647 3.2796 1.1067 8 6 1.4995 4.4921 0.9276 9 6 1.9233 1.6516 2.4249 10 8 2.6884 0.7100 2.5153 11 6 1.3773 2.2734 3.6385 12 6 0.5680 3.3676 3.6691 13 6 0.2717 3.6479 5.0261 14 6 -0.4935 4.6351 5.6588 15 6 -0.5946 4.6475 7.0208 16 6 0.0545 3.6882 7.7865 17 6 0.8133 2.7061 7.1865 18 6 0.9320 2.6735 5.8011 19 7 1.6007 1.8392 4.9314 20 6 2.3642 0.7608 5.2895 21 1 3.3358 0.6143 4.8415 22 6 1.8886 -0.1459 6.2299 23 7 2.6798 -1.0854 6.6950 24 14 0.1242 -0.0280 6.8320 25 1 0.0855 0.7369 8.1043 26 1 -0.7017 0.6663 5.8117 27 1 -0.4137 -1.3934 7.0587 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 3.9132 1.0464 -0.9874 34 1 3.9355 2.4621 0.0914 35 1 3.9500 0.8197 0.7777 36 1 0.8135 5.3388 0.9472 37 1 2.2291 4.5968 1.7307 38 1 2.0164 4.4654 -0.0317 39 1 0.2180 3.9248 2.8128 40 1 -1.0025 5.3849 5.0713 41 1 -1.1850 5.4102 7.5065 42 1 -0.0359 3.7118 8.8625 43 1 1.3148 1.9645 7.7906 44 1 2.3481 -1.7179 7.3514 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764816726.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:34 Heat of formation + Delta-G solvation = 28.234845 kcal Electronic energy + Delta-G solvation = -27992.439039 eV Core-core repulsion = 24298.629241 eV Total energy + Delta-G solvation = -3693.809798 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.49739 -40.84065 -38.42575 -37.75392 -36.42066 -35.40148 -33.23283 -32.43177 -31.04646 -30.87236 -29.65774 -27.31634 -26.69631 -25.38833 -24.32904 -23.11345 -22.31319 -21.77509 -20.58270 -20.11602 -18.84689 -17.60715 -17.48359 -17.01391 -16.74588 -16.53328 -16.03071 -15.73101 -15.52932 -15.17107 -15.04118 -14.88543 -14.83462 -14.79763 -14.52593 -14.15381 -14.03428 -13.55812 -13.35967 -13.19423 -12.88152 -12.72124 -12.69610 -12.50011 -12.32795 -12.25759 -12.03463 -11.94195 -11.86421 -11.56606 -11.37235 -11.21000 -10.58360 -10.38156 -10.02305 -9.01367 -8.80076 -8.59007 -6.54679 -0.03951 0.83643 0.91080 1.06413 1.12190 1.25267 1.33710 1.98647 2.28496 2.50376 2.73358 3.14477 3.19737 3.83561 3.93268 4.02139 4.07012 4.19289 4.29109 4.39282 4.43511 4.47688 4.50941 4.57898 4.61041 4.68255 4.69024 4.76833 4.79988 4.87781 4.91847 5.02905 5.05999 5.15409 5.24847 5.27872 5.29505 5.37367 5.43717 5.53570 5.67739 5.78727 5.83271 6.05542 6.11968 6.42119 6.50637 6.82060 7.11609 7.23533 8.31144 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013505 B = 0.006239 C = 0.004862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.745221 B = 4486.847857 C = 5757.108024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.141 4.141 3 C 0.152 3.848 4 H 0.130 0.870 5 C -0.169 4.169 6 N -0.462 5.462 7 O -0.145 6.145 8 C -0.015 4.015 9 C 0.590 3.410 10 O -0.537 6.537 11 C -0.047 4.047 12 C -0.155 4.155 13 C -0.149 4.149 14 C -0.065 4.065 15 C -0.155 4.155 16 C -0.106 4.106 17 C -0.160 4.160 18 C 0.038 3.962 19 N -0.295 5.295 20 C -0.341 4.341 21 H 0.079 0.921 22 C 0.038 3.962 23 N -0.884 5.884 24 Si 0.933 3.067 25 H -0.221 1.221 26 H -0.276 1.276 27 H -0.283 1.283 28 H 0.054 0.946 29 H 0.027 0.973 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.042 0.958 33 H 0.099 0.901 34 H 0.057 0.943 35 H 0.043 0.957 36 H 0.140 0.860 37 H 0.039 0.961 38 H 0.070 0.930 39 H 0.184 0.816 40 H 0.154 0.846 41 H 0.159 0.841 42 H 0.145 0.855 43 H 0.100 0.900 44 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.156 12.314 -11.696 18.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.179 4.179 3 C 0.053 3.947 4 H 0.147 0.853 5 C -0.227 4.227 6 N -0.242 5.242 7 O -0.148 6.148 8 C -0.112 4.112 9 C 0.382 3.618 10 O -0.415 6.415 11 C -0.160 4.160 12 C -0.182 4.182 13 C -0.154 4.154 14 C -0.083 4.083 15 C -0.174 4.174 16 C -0.126 4.126 17 C -0.181 4.181 18 C -0.075 4.075 19 N 0.040 4.960 20 C -0.469 4.469 21 H 0.096 0.904 22 C -0.169 4.169 23 N -0.517 5.517 24 Si 0.757 3.243 25 H -0.144 1.144 26 H -0.201 1.201 27 H -0.210 1.210 28 H 0.073 0.927 29 H 0.046 0.954 30 H 0.098 0.902 31 H 0.123 0.877 32 H 0.061 0.939 33 H 0.118 0.882 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.157 0.843 37 H 0.058 0.942 38 H 0.088 0.912 39 H 0.201 0.799 40 H 0.172 0.828 41 H 0.177 0.823 42 H 0.163 0.837 43 H 0.118 0.882 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.633 11.273 -11.475 17.400 hybrid contribution 0.305 -0.751 0.625 1.023 sum -6.328 10.523 -10.850 16.386 Atomic orbital electron populations 1.21659 0.95000 1.01531 1.01750 1.21961 0.96939 0.95829 1.03198 1.21620 0.94564 0.92955 0.85608 0.85256 1.22286 0.94377 1.02344 1.03659 1.49832 1.51213 1.18474 1.04692 1.90563 1.20579 1.08772 1.94916 1.23642 0.99924 0.86237 1.01371 1.17299 0.79694 0.82395 0.82402 1.90814 1.35626 1.29561 1.85506 1.20336 1.07774 1.02508 0.85412 1.21530 1.01667 0.98607 0.96383 1.18572 1.04404 0.98853 0.93523 1.20682 0.96444 0.96249 0.94973 1.20907 1.02619 1.00415 0.93467 1.21106 0.96814 0.94032 1.00659 1.20388 1.04317 1.02180 0.91168 1.18975 1.01902 0.93840 0.92765 1.40188 1.33366 1.19385 1.03079 1.19016 1.00594 1.01902 1.25355 0.90365 1.26093 1.02147 0.93572 0.95045 1.69684 1.37782 1.16414 1.27786 0.86117 0.79112 0.77493 0.81622 1.14424 1.20067 1.20968 0.92693 0.95376 0.90198 0.87715 0.93907 0.88217 0.92395 0.93755 0.84261 0.94190 0.91171 0.79938 0.82826 0.82323 0.83689 0.88194 0.90063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 9.77 71.98 0.70 -3.12 16 2 C -0.14 -3.99 5.25 30.59 0.16 -3.83 16 3 C 0.15 4.01 2.94 44.99 0.13 4.14 16 4 H 0.13 2.41 8.12 -2.39 -0.02 2.39 16 5 C -0.17 -4.42 9.00 71.98 0.65 -3.78 16 6 N -0.46 -15.46 2.20 -446.30 -0.98 -16.44 16 7 O -0.14 -3.97 8.51 -38.78 -0.33 -4.30 16 8 C -0.01 -0.28 10.17 113.37 1.15 0.87 16 9 C 0.59 26.85 7.14 86.51 0.62 27.47 16 10 O -0.54 -28.29 11.42 -4.22 -0.05 -28.34 16 11 C -0.05 -2.28 6.76 39.91 0.27 -2.01 16 12 C -0.16 -6.31 9.44 22.63 0.21 -6.10 16 13 C -0.15 -6.23 6.16 -21.34 -0.13 -6.36 16 14 C -0.07 -2.08 10.06 22.31 0.22 -1.86 16 15 C -0.16 -4.59 9.97 22.03 0.22 -4.37 16 16 C -0.11 -3.71 10.02 22.32 0.22 -3.49 16 17 C -0.16 -7.28 6.62 22.38 0.15 -7.13 16 18 C 0.04 1.90 4.85 39.06 0.19 2.09 16 19 N -0.29 -16.31 2.43 -331.34 -0.81 -17.11 16 20 C -0.34 -21.13 9.12 84.09 0.77 -20.36 16 21 H 0.08 5.44 7.35 -2.91 -0.02 5.42 16 22 C 0.04 2.30 5.24 84.95 0.45 2.74 16 23 N -0.88 -53.99 13.95 21.67 0.30 -53.68 16 24 Si 0.93 47.22 23.59 68.60 1.62 48.84 16 25 H -0.22 -10.00 5.62 99.48 0.56 -9.44 16 26 H -0.28 -14.80 6.73 99.48 0.67 -14.13 16 27 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 28 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.03 0.92 7.64 -2.39 -0.02 0.90 16 30 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.10 2.24 8.14 -2.38 -0.02 2.22 16 32 H 0.04 1.63 6.27 -2.39 -0.01 1.62 16 33 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 34 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.04 1.56 6.27 -2.39 -0.01 1.55 16 36 H 0.14 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.04 0.95 8.02 -2.38 -0.02 0.93 16 38 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.18 5.90 4.74 -2.91 -0.01 5.89 16 40 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 41 H 0.16 3.22 8.06 -2.91 -0.02 3.19 16 42 H 0.15 4.05 8.06 -2.91 -0.02 4.02 16 43 H 0.10 4.84 5.50 -2.91 -0.02 4.83 16 44 H 0.29 16.09 8.31 -92.71 -0.77 15.32 16 Total: -1.00 -78.48 347.47 6.56 -71.91 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: 0.82 Total: 24.23 kcal Atomic # 6 Polarization: -31.08 SS G_CDS: 5.98 Total: -25.10 kcal Atomic # 7 Polarization: -85.75 SS G_CDS: -1.48 Total: -87.24 kcal Atomic # 8 Polarization: -32.26 SS G_CDS: -0.38 Total: -32.64 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 1.62 Total: 48.84 kcal Total: -78.48 6.56 -71.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764816726.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.149 kcal (2) G-P(sol) polarization free energy of solvation -78.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds