Wall clock time and date at job start Tue Mar 31 2020 10:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47426 * 2 1 4 4 H 1.08996 * 109.57055 * 177.68701 * 3 2 1 5 5 C 1.50446 * 109.56475 * 57.44924 * 3 2 1 6 6 O 1.21276 * 118.48983 * 47.37588 * 5 3 2 7 7 N 1.33379 * 123.02132 * 227.35345 * 5 3 2 8 8 C 1.45651 * 124.59336 * 4.31730 * 7 5 3 9 9 C 1.52990 * 110.77031 * 338.10274 * 8 7 5 10 10 N 1.47054 * 109.66624 * 297.98780 * 3 2 1 11 11 C 1.34777 * 121.34841 * 342.63294 * 10 3 2 12 12 O 1.21283 * 120.00141 * 3.73815 * 11 10 3 13 13 C 1.50702 * 119.99653 * 183.73081 * 11 10 3 14 14 C 1.50701 * 109.47009 * 180.02562 * 13 11 10 15 15 C 1.37643 * 120.12374 * 264.73017 * 14 13 11 16 16 C 1.38623 * 120.24436 * 179.72094 * 15 14 13 17 17 C 1.38656 * 120.49804 * 0.55484 * 16 15 14 18 18 C 1.37598 * 120.25061 * 359.72616 * 17 16 15 19 19 C 1.40692 * 120.12902 * 85.00379 * 14 13 11 20 20 C 1.41390 * 120.24462 * 359.97438 * 19 14 13 21 21 H 1.08008 * 120.00125 * 325.36676 * 20 19 14 22 22 C 1.39949 * 120.00105 * 145.35925 * 20 19 14 23 23 N 1.30813 * 119.99900 * 4.07256 * 22 20 19 24 24 Si 1.86806 * 119.99964 * 184.07292 * 22 20 19 25 25 H 1.48493 * 109.47195 * 59.99991 * 24 22 20 26 26 H 1.48497 * 109.46844 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47117 * 300.00037 * 24 22 20 28 28 H 1.08995 * 109.47130 * 64.04287 * 1 2 3 29 29 H 1.09003 * 109.46898 * 184.03740 * 1 2 3 30 30 H 1.08999 * 109.47139 * 304.03815 * 1 2 3 31 31 H 1.09002 * 109.47232 * 240.00221 * 2 1 3 32 32 H 1.08999 * 109.47271 * 120.00654 * 2 1 3 33 33 H 0.97001 * 117.70472 * 184.34100 * 7 5 3 34 34 H 1.08996 * 109.21964 * 217.77087 * 8 7 5 35 35 H 1.09002 * 109.21611 * 98.43229 * 8 7 5 36 36 H 1.09003 * 109.71848 * 166.39776 * 9 8 7 37 37 H 1.08998 * 109.72080 * 287.04616 * 9 8 7 38 38 H 1.08995 * 109.47651 * 300.00380 * 13 11 10 39 39 H 1.09010 * 109.46686 * 60.00758 * 13 11 10 40 40 H 1.07999 * 119.88181 * 359.97438 * 15 14 13 41 41 H 1.07998 * 119.75015 * 180.25477 * 16 15 14 42 42 H 1.07997 * 119.87282 * 179.74213 * 17 16 15 43 43 H 1.08000 * 120.12535 * 180.02562 * 18 17 16 44 44 H 0.97000 * 120.00152 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1292 1.4446 0.0414 5 6 1.4889 2.1717 1.1949 6 8 1.5509 1.6339 2.2801 7 7 0.9356 3.3827 1.1158 8 6 0.7119 4.1101 -0.1261 9 6 1.6393 3.5976 -1.2297 10 7 1.5923 2.1257 -1.2228 11 6 1.1565 1.4329 -2.2936 12 8 1.0636 0.2249 -2.2375 13 6 0.7843 2.1592 -3.5604 14 6 0.3317 1.1627 -4.5964 15 6 1.2227 0.6833 -5.5295 16 6 0.8104 -0.2377 -6.4799 17 6 -0.5041 -0.6778 -6.5096 18 6 -1.4134 -0.2077 -5.5901 19 6 -1.0047 0.7232 -4.6170 20 6 -1.9301 1.2127 -3.6667 21 1 -1.6050 1.4346 -2.6609 22 6 -3.2674 1.4099 -4.0293 23 7 -3.6788 1.0668 -5.2227 24 14 -4.4647 2.1630 -2.8092 25 1 -3.9936 3.5180 -2.4254 26 1 -5.8087 2.2639 -3.4326 27 1 -4.5438 1.3054 -1.5995 28 1 -0.3633 0.4498 -0.9240 29 1 -0.3633 -1.0252 0.0724 30 1 -0.3633 0.5752 0.8516 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 0.6634 3.8092 1.9434 34 1 0.9031 5.1703 0.0395 35 1 -0.3242 3.9776 -0.4379 36 1 1.3024 3.9718 -2.1964 37 1 2.6584 3.9340 -1.0394 38 1 -0.0243 2.8602 -3.3533 39 1 1.6510 2.7045 -3.9346 40 1 2.2479 1.0229 -5.5187 41 1 1.5173 -0.6117 -7.2058 42 1 -0.8154 -1.3925 -7.2571 43 1 -2.4367 -0.5522 -5.6148 44 1 -4.6057 1.2031 -5.4740 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776901816.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:58 Heat of formation + Delta-G solvation = -27.181512 kcal Electronic energy + Delta-G solvation = -27873.791916 eV Core-core repulsion = 24177.579084 eV Total energy + Delta-G solvation = -3696.212831 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.01912 -39.05205 -37.46078 -36.43544 -34.42484 -33.57376 -33.07403 -31.27670 -29.43692 -29.22942 -27.59205 -26.14586 -24.88213 -24.16354 -22.00598 -20.93696 -20.80477 -19.41677 -18.37125 -17.38125 -17.23186 -17.07632 -16.02810 -15.92594 -15.49269 -15.18998 -14.90107 -14.44405 -14.00817 -13.79272 -13.60639 -13.51810 -13.14446 -12.80678 -12.62611 -12.57213 -12.32013 -11.88875 -11.77238 -11.56379 -11.31030 -11.16791 -11.12282 -11.02123 -10.87491 -10.67982 -10.48957 -10.33698 -10.03693 -9.55992 -9.46380 -9.24208 -9.14063 -8.64486 -8.41296 -7.33150 -7.19671 -6.61967 -4.40514 2.55127 2.71779 2.86815 3.03318 3.05467 3.07644 3.12757 3.22648 3.32469 3.94417 4.38518 4.55533 4.70177 4.89310 4.93186 5.09505 5.17915 5.32594 5.39262 5.62445 5.68501 5.76294 5.89028 5.96250 6.03922 6.16081 6.23312 6.31842 6.34945 6.48066 6.50970 6.63905 6.76025 6.84988 6.89119 7.13072 7.16738 7.28456 7.42756 7.57340 7.68875 7.88452 8.08895 8.10410 8.10752 8.31505 8.65006 8.71761 8.93143 9.00540 10.28741 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.012526 B = 0.005690 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.782013 B = 4919.786355 C = 6061.251341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.121 4.121 3 C 0.139 3.861 4 H 0.096 0.904 5 C 0.518 3.482 6 O -0.548 6.548 7 N -0.719 5.719 8 C 0.092 3.908 9 C 0.094 3.906 10 N -0.627 5.627 11 C 0.521 3.479 12 O -0.495 6.495 13 C -0.070 4.070 14 C -0.172 4.172 15 C -0.088 4.088 16 C -0.228 4.228 17 C -0.113 4.113 18 C -0.147 4.147 19 C 0.124 3.876 20 C -0.458 4.458 21 H 0.071 0.929 22 C 0.073 3.927 23 N -0.811 5.811 24 Si 0.905 3.095 25 H -0.267 1.267 26 H -0.279 1.279 27 H -0.266 1.266 28 H 0.076 0.924 29 H 0.051 0.949 30 H 0.031 0.969 31 H 0.120 0.880 32 H 0.060 0.940 33 H 0.397 0.603 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.111 0.889 37 H 0.077 0.923 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.127 0.873 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.617 8.641 6.543 13.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.158 4.158 3 C 0.033 3.967 4 H 0.114 0.886 5 C 0.305 3.695 6 O -0.426 6.426 7 N -0.371 5.371 8 C -0.033 4.033 9 C -0.030 4.030 10 N -0.366 5.366 11 C 0.312 3.688 12 O -0.368 6.368 13 C -0.110 4.110 14 C -0.174 4.174 15 C -0.107 4.107 16 C -0.247 4.247 17 C -0.132 4.132 18 C -0.166 4.166 19 C 0.122 3.878 20 C -0.489 4.489 21 H 0.089 0.911 22 C -0.142 4.142 23 N -0.438 5.438 24 Si 0.731 3.269 25 H -0.192 1.192 26 H -0.204 1.204 27 H -0.191 1.191 28 H 0.094 0.906 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.138 0.862 32 H 0.079 0.921 33 H 0.232 0.768 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.129 0.871 37 H 0.095 0.905 38 H 0.115 0.885 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.145 0.855 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.426 7.554 6.747 12.559 hybrid contribution -0.786 0.839 0.837 1.422 sum 6.640 8.393 7.584 13.116 Atomic orbital electron populations 1.21908 0.94875 1.01737 1.01583 1.22097 0.97794 0.91776 1.04151 1.21401 0.99219 0.94739 0.81336 0.88607 1.20517 0.77059 0.80937 0.91034 1.90745 1.57824 1.65161 1.28822 1.45371 1.62949 1.18489 1.10321 1.21815 1.00892 0.96176 0.84441 1.22030 0.99942 0.80670 1.00333 1.48394 1.67686 1.06068 1.14486 1.21194 0.75378 0.88284 0.83980 1.90622 1.49956 1.14224 1.81972 1.20339 1.01101 0.98349 0.91203 1.19150 0.95694 1.03543 0.99002 1.20306 0.96500 0.97822 0.96054 1.20380 0.96016 1.05363 1.02923 1.20764 0.93849 0.99781 0.98785 1.21579 0.99465 0.98233 0.97362 1.17360 0.90140 0.88445 0.91823 1.19356 0.92527 1.39152 0.97904 0.91095 1.25818 0.98778 0.94214 0.95359 1.69740 1.17536 1.37744 1.18785 0.86410 0.79251 0.80158 0.81127 1.19179 1.20393 1.19106 0.90575 0.92963 0.94951 0.86194 0.92146 0.76829 0.89387 0.90741 0.87126 0.90522 0.88501 0.90513 0.89724 0.89636 0.89539 0.85540 0.91155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 8.85 37.15 0.33 -2.33 16 2 C -0.12 -2.00 4.90 -26.74 -0.13 -2.13 16 3 C 0.14 1.99 3.38 -68.90 -0.23 1.76 16 4 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 5 C 0.52 7.46 5.95 -11.73 -0.07 7.39 16 6 O -0.55 -9.65 17.12 5.56 0.10 -9.55 16 7 N -0.72 -7.90 5.42 -61.32 -0.33 -8.24 16 8 C 0.09 0.79 7.34 -4.50 -0.03 0.76 16 9 C 0.09 0.87 6.45 -3.63 -0.02 0.85 16 10 N -0.63 -8.61 2.84 -166.54 -0.47 -9.08 16 11 C 0.52 9.11 6.06 -10.98 -0.07 9.04 16 12 O -0.49 -10.38 10.33 5.56 0.06 -10.32 16 13 C -0.07 -1.23 3.60 -29.03 -0.10 -1.34 16 14 C -0.17 -3.85 4.43 -103.91 -0.46 -4.31 16 15 C -0.09 -1.92 9.66 -39.66 -0.38 -2.30 16 16 C -0.23 -5.06 10.05 -39.29 -0.39 -5.46 16 17 C -0.11 -2.67 10.02 -39.66 -0.40 -3.07 16 18 C -0.15 -3.80 8.67 -38.87 -0.34 -4.14 16 19 C 0.12 3.16 5.55 -106.83 -0.59 2.57 16 20 C -0.46 -11.49 7.92 -37.74 -0.30 -11.79 16 21 H 0.07 1.74 6.80 -52.48 -0.36 1.38 16 22 C 0.07 1.79 5.42 -17.34 -0.09 1.70 16 23 N -0.81 -20.55 10.61 55.55 0.59 -19.96 16 24 Si 0.91 18.49 29.56 -169.99 -5.03 13.46 16 25 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 26 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 27 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 28 H 0.08 1.59 5.10 -51.93 -0.27 1.32 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.03 0.59 6.92 -51.93 -0.36 0.23 16 31 H 0.12 2.18 5.59 -52.78 -0.29 1.88 16 32 H 0.06 0.97 7.95 -51.93 -0.41 0.55 16 33 H 0.40 3.78 8.80 -40.82 -0.36 3.42 16 34 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.11 0.90 6.04 -51.93 -0.31 0.59 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.10 1.66 6.78 -51.93 -0.35 1.31 16 39 H 0.08 1.10 7.88 -51.92 -0.41 0.69 16 40 H 0.08 1.60 8.06 -52.49 -0.42 1.18 16 41 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 42 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 43 H 0.13 3.42 6.15 -52.49 -0.32 3.10 16 44 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 LS Contribution 346.64 15.07 5.22 5.22 Total: -1.00 -31.05 346.64 -9.12 -40.17 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -5.96 Total: 11.11 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -3.29 Total: -12.81 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: -0.22 Total: -37.28 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: 0.15 Total: -19.88 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.05 -9.12 -40.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776901816.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.986 kcal (2) G-P(sol) polarization free energy of solvation -31.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds