Wall clock time and date at job start Tue Mar 31 2020 10:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47426 * 2 1 4 4 H 1.08996 * 109.57055 * 177.68701 * 3 2 1 5 5 C 1.50446 * 109.56475 * 57.44924 * 3 2 1 6 6 O 1.21276 * 118.48983 * 47.37588 * 5 3 2 7 7 N 1.33379 * 123.02132 * 227.35345 * 5 3 2 8 8 C 1.45651 * 124.59336 * 4.31730 * 7 5 3 9 9 C 1.52990 * 110.77031 * 338.10274 * 8 7 5 10 10 N 1.47054 * 109.66624 * 297.98780 * 3 2 1 11 11 C 1.34777 * 121.34841 * 342.63294 * 10 3 2 12 12 O 1.21283 * 120.00141 * 3.73815 * 11 10 3 13 13 C 1.50702 * 119.99653 * 183.73081 * 11 10 3 14 14 C 1.50701 * 109.47009 * 180.02562 * 13 11 10 15 15 C 1.37643 * 120.12374 * 264.73017 * 14 13 11 16 16 C 1.38623 * 120.24436 * 179.72094 * 15 14 13 17 17 C 1.38656 * 120.49804 * 0.55484 * 16 15 14 18 18 C 1.37598 * 120.25061 * 359.72616 * 17 16 15 19 19 C 1.40692 * 120.12902 * 85.00379 * 14 13 11 20 20 C 1.41390 * 120.24462 * 359.97438 * 19 14 13 21 21 H 1.08008 * 120.00125 * 325.36676 * 20 19 14 22 22 C 1.39949 * 120.00105 * 145.35925 * 20 19 14 23 23 N 1.30813 * 119.99900 * 4.07256 * 22 20 19 24 24 Si 1.86806 * 119.99964 * 184.07292 * 22 20 19 25 25 H 1.48493 * 109.47195 * 59.99991 * 24 22 20 26 26 H 1.48497 * 109.46844 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47117 * 300.00037 * 24 22 20 28 28 H 1.08995 * 109.47130 * 64.04287 * 1 2 3 29 29 H 1.09003 * 109.46898 * 184.03740 * 1 2 3 30 30 H 1.08999 * 109.47139 * 304.03815 * 1 2 3 31 31 H 1.09002 * 109.47232 * 240.00221 * 2 1 3 32 32 H 1.08999 * 109.47271 * 120.00654 * 2 1 3 33 33 H 0.97001 * 117.70472 * 184.34100 * 7 5 3 34 34 H 1.08996 * 109.21964 * 217.77087 * 8 7 5 35 35 H 1.09002 * 109.21611 * 98.43229 * 8 7 5 36 36 H 1.09003 * 109.71848 * 166.39776 * 9 8 7 37 37 H 1.08998 * 109.72080 * 287.04616 * 9 8 7 38 38 H 1.08995 * 109.47651 * 300.00380 * 13 11 10 39 39 H 1.09010 * 109.46686 * 60.00758 * 13 11 10 40 40 H 1.07999 * 119.88181 * 359.97438 * 15 14 13 41 41 H 1.07998 * 119.75015 * 180.25477 * 16 15 14 42 42 H 1.07997 * 119.87282 * 179.74213 * 17 16 15 43 43 H 1.08000 * 120.12535 * 180.02562 * 18 17 16 44 44 H 0.97000 * 120.00152 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1292 1.4446 0.0414 5 6 1.4889 2.1717 1.1949 6 8 1.5509 1.6339 2.2801 7 7 0.9356 3.3827 1.1158 8 6 0.7119 4.1101 -0.1261 9 6 1.6393 3.5976 -1.2297 10 7 1.5923 2.1257 -1.2228 11 6 1.1565 1.4329 -2.2936 12 8 1.0636 0.2249 -2.2375 13 6 0.7843 2.1592 -3.5604 14 6 0.3317 1.1627 -4.5964 15 6 1.2227 0.6833 -5.5295 16 6 0.8104 -0.2377 -6.4799 17 6 -0.5041 -0.6778 -6.5096 18 6 -1.4134 -0.2077 -5.5901 19 6 -1.0047 0.7232 -4.6170 20 6 -1.9301 1.2127 -3.6667 21 1 -1.6050 1.4346 -2.6609 22 6 -3.2674 1.4099 -4.0293 23 7 -3.6788 1.0668 -5.2227 24 14 -4.4647 2.1630 -2.8092 25 1 -3.9936 3.5180 -2.4254 26 1 -5.8087 2.2639 -3.4326 27 1 -4.5438 1.3054 -1.5995 28 1 -0.3633 0.4498 -0.9240 29 1 -0.3633 -1.0252 0.0724 30 1 -0.3633 0.5752 0.8516 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 0.6634 3.8092 1.9434 34 1 0.9031 5.1703 0.0395 35 1 -0.3242 3.9776 -0.4379 36 1 1.3024 3.9718 -2.1964 37 1 2.6584 3.9340 -1.0394 38 1 -0.0243 2.8602 -3.3533 39 1 1.6510 2.7045 -3.9346 40 1 2.2479 1.0229 -5.5187 41 1 1.5173 -0.6117 -7.2058 42 1 -0.8154 -1.3925 -7.2571 43 1 -2.4367 -0.5522 -5.6148 44 1 -4.6057 1.2031 -5.4740 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776901816.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:57 Heat of formation + Delta-G solvation = -47.046071 kcal Electronic energy + Delta-G solvation = -27874.653308 eV Core-core repulsion = 24177.579084 eV Total energy + Delta-G solvation = -3697.074223 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.16354 -40.35569 -39.12649 -37.50184 -35.61770 -35.38921 -34.35719 -32.82530 -31.24985 -30.21527 -29.02287 -27.62822 -26.59262 -25.16443 -23.18007 -22.71876 -22.27886 -20.85019 -19.49606 -18.98265 -18.40226 -18.27939 -17.31492 -17.17224 -16.95747 -16.36557 -16.23470 -15.99955 -15.32621 -15.25532 -15.05531 -14.92828 -14.40405 -14.32169 -14.07330 -13.64996 -13.57377 -13.43049 -13.22913 -12.85136 -12.75193 -12.70108 -12.62772 -12.49865 -12.41396 -12.18375 -12.07699 -11.82075 -11.34457 -11.28793 -11.23099 -10.94304 -10.16315 -9.97534 -9.56726 -9.11244 -9.02793 -8.43190 -6.29508 1.02453 1.18693 1.37756 1.45932 1.46722 1.52977 1.82941 1.89409 2.23605 2.29454 2.87657 3.41259 3.64842 3.81803 3.90727 4.04488 4.14105 4.21899 4.29248 4.41238 4.45559 4.49750 4.64987 4.68564 4.70770 4.73806 4.77842 4.85162 4.97061 5.01807 5.12895 5.21995 5.24752 5.38046 5.46467 5.56105 5.61551 5.79479 5.85062 6.08498 6.18764 6.24261 6.26592 6.46904 6.48176 6.81369 7.06867 7.08964 7.17646 7.43288 8.48887 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.012526 B = 0.005690 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.782013 B = 4919.786355 C = 6061.251341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 C 0.140 3.860 4 H 0.120 0.880 5 C 0.517 3.483 6 O -0.588 6.588 7 N -0.708 5.708 8 C 0.088 3.912 9 C 0.084 3.916 10 N -0.619 5.619 11 C 0.522 3.478 12 O -0.540 6.540 13 C -0.067 4.067 14 C -0.171 4.171 15 C -0.097 4.097 16 C -0.230 4.230 17 C -0.126 4.126 18 C -0.183 4.183 19 C 0.092 3.908 20 C -0.476 4.476 21 H 0.069 0.931 22 C 0.031 3.969 23 N -0.844 5.844 24 Si 0.968 3.032 25 H -0.246 1.246 26 H -0.274 1.274 27 H -0.275 1.275 28 H 0.053 0.947 29 H 0.040 0.960 30 H 0.030 0.970 31 H 0.105 0.895 32 H 0.062 0.938 33 H 0.406 0.594 34 H 0.136 0.864 35 H 0.063 0.937 36 H 0.127 0.873 37 H 0.110 0.890 38 H 0.101 0.899 39 H 0.117 0.883 40 H 0.120 0.880 41 H 0.114 0.886 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.479 11.629 7.212 16.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.153 4.153 3 C 0.034 3.966 4 H 0.137 0.863 5 C 0.303 3.697 6 O -0.468 6.468 7 N -0.358 5.358 8 C -0.036 4.036 9 C -0.038 4.038 10 N -0.357 5.357 11 C 0.312 3.688 12 O -0.417 6.417 13 C -0.106 4.106 14 C -0.172 4.172 15 C -0.115 4.115 16 C -0.249 4.249 17 C -0.145 4.145 18 C -0.202 4.202 19 C 0.090 3.910 20 C -0.507 4.507 21 H 0.087 0.913 22 C -0.180 4.180 23 N -0.473 5.473 24 Si 0.790 3.210 25 H -0.169 1.169 26 H -0.199 1.199 27 H -0.201 1.201 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.049 0.951 31 H 0.123 0.877 32 H 0.080 0.920 33 H 0.242 0.758 34 H 0.154 0.846 35 H 0.081 0.919 36 H 0.145 0.855 37 H 0.128 0.872 38 H 0.119 0.881 39 H 0.135 0.865 40 H 0.138 0.862 41 H 0.132 0.868 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.299 10.626 7.408 15.946 hybrid contribution -1.282 -0.098 0.575 1.409 sum 8.017 10.528 7.984 15.454 Atomic orbital electron populations 1.21777 0.96530 1.00684 1.00060 1.21930 0.96133 0.93850 1.03375 1.21355 1.00425 0.93237 0.81611 0.86299 1.20464 0.77261 0.81732 0.90248 1.90733 1.59704 1.66398 1.29982 1.45356 1.61171 1.17441 1.11865 1.22073 1.00138 0.98349 0.83022 1.22491 1.02224 0.77499 1.01586 1.48315 1.66246 1.08029 1.13070 1.21088 0.75189 0.87727 0.84759 1.90629 1.52110 1.16146 1.82841 1.20352 1.02758 0.97281 0.90254 1.19629 0.94518 1.03367 0.99729 1.20758 0.98080 0.97289 0.95337 1.20779 0.95715 1.04962 1.03430 1.20990 0.94507 1.00203 0.98775 1.21544 0.99026 1.00119 0.99545 1.17730 0.92022 0.89009 0.92238 1.19471 0.93323 1.40082 0.97817 0.91271 1.26599 1.00156 0.94433 0.96861 1.69855 1.17952 1.38984 1.20470 0.85463 0.77226 0.80018 0.78324 1.16948 1.19922 1.20071 0.92831 0.94100 0.95137 0.87711 0.91978 0.75784 0.84643 0.91863 0.85536 0.87234 0.88099 0.86460 0.86193 0.86840 0.88176 0.88104 0.90971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.06 8.85 71.98 0.64 -4.42 16 2 C -0.12 -3.83 4.90 30.59 0.15 -3.68 16 3 C 0.14 3.73 3.38 44.06 0.15 3.88 16 4 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 5 C 0.52 13.85 5.95 87.79 0.52 14.37 16 6 O -0.59 -20.08 17.12 -3.02 -0.05 -20.13 16 7 N -0.71 -13.34 5.42 -467.08 -2.53 -15.87 16 8 C 0.09 1.13 7.34 86.54 0.63 1.77 16 9 C 0.08 1.17 6.45 86.23 0.56 1.72 16 10 N -0.62 -15.32 2.84 -799.20 -2.27 -17.59 16 11 C 0.52 17.41 6.06 87.66 0.53 17.94 16 12 O -0.54 -22.79 10.33 -3.04 -0.03 -22.82 16 13 C -0.07 -2.19 3.60 29.10 0.10 -2.09 16 14 C -0.17 -7.49 4.43 -19.41 -0.09 -7.58 16 15 C -0.10 -4.00 9.66 22.22 0.21 -3.78 16 16 C -0.23 -9.94 10.05 22.46 0.23 -9.72 16 17 C -0.13 -6.07 10.02 22.22 0.22 -5.84 16 18 C -0.18 -9.87 8.67 22.73 0.20 -9.67 16 19 C 0.09 4.78 5.55 -21.29 -0.12 4.66 16 20 C -0.48 -24.47 7.92 23.46 0.19 -24.28 16 21 H 0.07 3.46 6.80 -2.91 -0.02 3.44 16 22 C 0.03 1.55 5.42 85.26 0.46 2.02 16 23 N -0.84 -44.50 10.61 21.83 0.23 -44.27 16 24 Si 0.97 38.27 29.56 68.60 2.03 40.29 16 25 H -0.25 -8.80 7.11 99.48 0.71 -8.10 16 26 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 27 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 28 H 0.05 2.29 5.10 -2.39 -0.01 2.28 16 29 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.03 1.12 6.92 -2.39 -0.02 1.10 16 31 H 0.10 3.87 5.59 -15.87 -0.09 3.78 16 32 H 0.06 2.00 7.95 -2.39 -0.02 1.98 16 33 H 0.41 6.50 8.80 -92.71 -0.82 5.69 16 34 H 0.14 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.13 1.42 6.04 -2.39 -0.01 1.40 16 37 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.10 3.23 6.78 -2.39 -0.02 3.21 16 39 H 0.12 2.82 7.88 -2.38 -0.02 2.81 16 40 H 0.12 4.07 8.06 -2.91 -0.02 4.04 16 41 H 0.11 4.19 8.06 -2.91 -0.02 4.17 16 42 H 0.10 4.34 8.06 -2.91 -0.02 4.32 16 43 H 0.10 5.84 6.15 -2.91 -0.02 5.82 16 44 H 0.28 13.63 8.30 -92.71 -0.77 12.87 16 Total: -1.00 -72.06 346.64 2.11 -69.95 By element: Atomic # 1 Polarization: 35.00 SS G_CDS: 0.15 Total: 35.14 kcal Atomic # 6 Polarization: -29.29 SS G_CDS: 4.59 Total: -24.70 kcal Atomic # 7 Polarization: -73.16 SS G_CDS: -4.57 Total: -77.73 kcal Atomic # 8 Polarization: -42.87 SS G_CDS: -0.08 Total: -42.95 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 2.03 Total: 40.29 kcal Total: -72.06 2.11 -69.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776901816.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.906 kcal (2) G-P(sol) polarization free energy of solvation -72.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds