Wall clock time and date at job start Tue Mar 31 2020 10:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50706 * 119.99726 * 2 1 4 4 H 1.08990 * 109.58556 * 5.27901 * 3 2 1 5 5 C 1.53194 * 109.70261 * 125.63985 * 3 2 1 6 6 C 1.53040 * 109.31223 * 174.48962 * 5 3 2 7 7 C 1.53042 * 109.53408 * 298.63534 * 6 5 3 8 8 C 1.52755 * 109.39032 * 61.23919 * 7 6 5 9 9 N 1.46923 * 109.58096 * 244.99655 * 3 2 1 10 10 C 1.34773 * 120.63678 * 6.44112 * 9 3 2 11 11 O 1.21597 * 119.99621 * 354.63586 * 10 9 3 12 12 N 1.34772 * 120.00851 * 174.64346 * 10 9 3 13 13 C 1.39937 * 120.00545 * 185.39759 * 12 10 9 14 14 C 1.38958 * 120.03451 * 214.44501 * 13 12 10 15 15 C 1.38164 * 120.06366 * 179.71991 * 14 13 12 16 16 C 1.38162 * 120.14252 * 0.55435 * 15 14 13 17 17 C 1.38914 * 120.06817 * 359.71868 * 16 15 14 18 18 O 1.35745 * 120.03374 * 179.97438 * 17 16 15 19 19 C 1.34831 * 117.00236 * 354.72296 * 18 17 16 20 20 H 1.08003 * 119.99943 * 5.02621 * 19 18 17 21 21 C 1.38648 * 119.99883 * 185.03458 * 19 18 17 22 22 N 1.31555 * 120.00349 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99834 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47268 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47428 * 119.99694 * 23 21 19 26 26 H 1.48500 * 109.47062 * 239.99801 * 23 21 19 27 27 C 1.38703 * 120.03577 * 34.71552 * 13 12 10 28 28 H 1.07998 * 120.00007 * 180.02562 * 1 2 3 29 29 H 1.08007 * 120.00110 * 0.02562 * 1 2 3 30 30 H 1.07993 * 120.00143 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.49851 * 294.43704 * 5 3 2 32 32 H 1.08999 * 109.49841 * 54.53757 * 5 3 2 33 33 H 1.08999 * 109.45891 * 58.64774 * 6 5 3 34 34 H 1.08999 * 109.46102 * 178.62655 * 6 5 3 35 35 H 1.09004 * 109.49655 * 181.32041 * 7 6 5 36 36 H 1.09007 * 109.49837 * 301.40729 * 7 6 5 37 37 H 1.08994 * 109.51564 * 185.70777 * 8 7 6 38 38 H 1.09009 * 109.42971 * 65.42065 * 8 7 6 39 39 H 0.97005 * 119.99330 * 5.39123 * 12 10 9 40 40 H 1.08001 * 119.96931 * 359.97438 * 14 13 12 41 41 H 1.08005 * 119.92504 * 180.25382 * 15 14 13 42 42 H 1.08001 * 119.96760 * 179.70560 * 16 15 14 43 43 H 0.97001 * 120.00568 * 180.02562 * 22 21 19 44 44 H 1.08002 * 120.07027 * 0.02657 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3606 2.1328 0.0945 5 6 3.0495 1.3323 1.1721 6 6 3.9049 2.5983 1.0847 7 6 4.7053 2.5859 -0.2197 8 6 3.7424 2.5698 -1.4055 9 7 2.8163 1.4391 -1.2545 10 6 2.6647 0.5388 -2.2459 11 8 1.9750 -0.4473 -2.0714 12 7 3.2777 0.7313 -3.4307 13 6 3.0312 -0.1419 -4.4961 14 6 4.0470 -0.4486 -5.3933 15 6 3.8060 -1.3151 -6.4421 16 6 2.5519 -1.8705 -6.6089 17 6 1.5307 -1.5635 -5.7187 18 8 0.2987 -2.1091 -5.8836 19 6 0.1018 -2.8529 -6.9908 20 1 0.9269 -3.0593 -7.6565 21 6 -1.1599 -3.3526 -7.2749 22 7 -2.1648 -3.1015 -6.4639 23 14 -1.4328 -4.3825 -8.8093 24 1 -0.1522 -4.5178 -9.5489 25 1 -1.9252 -5.7286 -8.4209 26 1 -2.4380 -3.7193 -9.6782 27 6 1.7712 -0.6979 -4.6609 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5401 0.9354 -0.0004 30 1 1.8500 -0.9352 0.0004 31 1 2.4975 1.3305 2.1120 32 1 3.6935 0.4541 1.1262 33 1 3.2584 3.4756 1.1056 34 1 4.5908 2.6323 1.9311 35 1 5.3320 3.4764 -0.2705 36 1 5.3338 1.6959 -0.2526 37 1 4.3067 2.4589 -2.3313 38 1 3.1791 3.5029 -1.4279 39 1 3.8896 1.4752 -3.5449 40 1 5.0271 -0.0123 -5.2684 41 1 4.5983 -1.5551 -7.1357 42 1 2.3653 -2.5438 -7.4325 43 1 -3.0475 -3.4515 -6.6624 44 1 0.9787 -0.4574 -3.9676 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785698477.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:45 Heat of formation + Delta-G solvation = 11.225166 kcal Electronic energy + Delta-G solvation = -26415.899796 eV Core-core repulsion = 22721.352403 eV Total energy + Delta-G solvation = -3694.547393 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.85887 -39.02438 -37.81394 -36.38683 -34.81927 -33.42017 -32.80215 -32.17956 -30.01340 -29.37841 -28.28917 -25.47656 -25.14840 -23.62321 -22.41238 -21.60795 -20.87125 -19.97180 -19.58747 -18.22312 -17.74105 -17.01731 -16.18193 -15.54869 -15.12562 -15.00570 -14.89506 -14.51400 -14.35028 -14.15036 -14.05344 -13.68513 -13.51122 -13.47329 -13.34222 -12.68415 -12.46922 -12.40825 -11.82853 -11.69466 -11.52469 -11.36493 -11.19411 -11.12641 -10.99780 -10.92724 -10.75990 -10.58551 -10.41373 -10.31651 -9.69307 -9.24706 -8.78284 -8.68845 -8.40607 -7.59327 -7.11948 -6.37405 -3.96471 2.10637 2.34342 2.40600 3.02299 3.16345 3.17862 3.23752 3.37328 3.83194 4.03828 4.44119 4.49906 4.56882 4.67043 4.76438 4.97600 5.02884 5.16149 5.18427 5.27245 5.37271 5.44035 5.56486 5.56862 5.67028 5.68530 5.72445 5.79021 5.87910 6.03550 6.15110 6.20143 6.29521 6.38338 6.47598 6.59784 6.89530 6.95369 7.07612 7.10903 7.12645 7.24966 7.40476 7.53939 7.87699 8.01612 8.07844 8.72731 9.07649 9.80004 10.80674 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.019991 B = 0.003247 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.306986 B = 8620.306592 C = 9808.888397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.108 4.108 3 C 0.191 3.809 4 H 0.074 0.926 5 C -0.129 4.129 6 C -0.119 4.119 7 C -0.136 4.136 8 C 0.110 3.890 9 N -0.627 5.627 10 C 0.702 3.298 11 O -0.538 6.538 12 N -0.683 5.683 13 C 0.195 3.805 14 C -0.238 4.238 15 C -0.058 4.058 16 C -0.247 4.247 17 C 0.169 3.831 18 O -0.174 6.174 19 C -0.390 4.390 20 H 0.093 0.907 21 C 0.038 3.962 22 N -0.861 5.861 23 Si 0.941 3.059 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.185 4.185 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.115 0.885 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.398 0.602 40 H 0.106 0.894 41 H 0.111 0.889 42 H 0.127 0.873 43 H 0.269 0.731 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.440 12.952 12.121 22.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.127 4.127 3 C 0.088 3.912 4 H 0.092 0.908 5 C -0.167 4.167 6 C -0.156 4.156 7 C -0.174 4.174 8 C -0.013 4.013 9 N -0.366 5.366 10 C 0.404 3.596 11 O -0.412 6.412 12 N -0.333 5.333 13 C 0.102 3.898 14 C -0.260 4.260 15 C -0.076 4.076 16 C -0.267 4.267 17 C 0.114 3.886 18 O -0.077 6.077 19 C -0.467 4.467 20 H 0.110 0.890 21 C -0.166 4.166 22 N -0.496 5.496 23 Si 0.766 3.234 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.207 4.207 28 H 0.116 0.884 29 H 0.105 0.895 30 H 0.133 0.867 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.235 0.765 40 H 0.124 0.876 41 H 0.129 0.871 42 H 0.145 0.855 43 H 0.079 0.921 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 12.452 12.207 12.430 21.414 hybrid contribution 0.316 -0.091 -0.969 1.023 sum 12.769 12.116 11.461 21.005 Atomic orbital electron populations 1.23489 0.95541 1.01360 1.04061 1.22538 0.95838 0.96690 0.97604 1.20258 0.91898 0.96907 0.82112 0.90840 1.21969 0.98150 0.98631 0.97943 1.21510 0.98696 0.98072 0.97357 1.21859 0.97945 1.02772 0.94854 1.21556 0.91452 0.89693 0.98635 1.47469 1.45996 1.27301 1.15797 1.15953 0.80704 0.82925 0.80012 1.91027 1.42639 1.28429 1.79136 1.42780 1.48644 1.31806 1.10035 1.16939 0.92838 0.92811 0.87250 1.20222 0.97278 1.07671 1.00783 1.20476 0.95912 0.95145 0.96111 1.21161 0.93722 1.07866 1.03973 1.19111 0.86352 0.90630 0.92459 1.83996 1.24999 1.57475 1.41274 1.21391 0.96115 1.29052 1.00132 0.88970 1.25294 0.94299 0.97946 0.99055 1.70066 1.00765 1.42758 1.35999 0.85652 0.78846 0.79006 0.79922 1.19100 1.20189 1.20204 1.20034 0.96246 1.03630 1.00778 0.88355 0.89547 0.86693 0.90502 0.91188 0.91685 0.91535 0.90615 0.91337 0.90493 0.91191 0.76455 0.87573 0.87104 0.85501 0.92134 0.85309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.05 14.25 29.02 0.41 -2.64 16 2 C -0.11 -1.57 5.72 -36.02 -0.21 -1.78 16 3 C 0.19 2.21 3.24 -68.75 -0.22 1.98 16 4 H 0.07 0.79 7.80 -51.93 -0.41 0.38 16 5 C -0.13 -1.12 5.36 -26.61 -0.14 -1.26 16 6 C -0.12 -0.79 5.89 -26.69 -0.16 -0.94 16 7 C -0.14 -0.90 6.06 -26.84 -0.16 -1.06 16 8 C 0.11 0.90 6.36 -3.93 -0.03 0.87 16 9 N -0.63 -7.69 2.98 -172.49 -0.51 -8.20 16 10 C 0.70 11.63 7.95 -86.93 -0.69 10.94 16 11 O -0.54 -11.20 10.53 5.28 0.06 -11.15 16 12 N -0.68 -10.57 5.25 -14.24 -0.07 -10.64 16 13 C 0.20 3.78 6.25 -83.72 -0.52 3.26 16 14 C -0.24 -4.20 9.96 -39.34 -0.39 -4.59 16 15 C -0.06 -1.08 10.03 -39.64 -0.40 -1.47 16 16 C -0.25 -5.58 9.17 -39.36 -0.36 -5.94 16 17 C 0.17 4.36 6.65 -39.13 -0.26 4.10 16 18 O -0.17 -5.26 9.75 0.06 0.00 -5.25 16 19 C -0.39 -11.30 9.49 30.88 0.29 -11.00 16 20 H 0.09 2.45 5.20 -52.48 -0.27 2.18 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 22 N -0.86 -26.13 13.67 55.48 0.76 -25.37 16 23 Si 0.94 21.07 29.55 -169.99 -5.02 16.05 16 24 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 25 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 27 C -0.19 -4.39 8.59 -39.21 -0.34 -4.73 16 28 H 0.10 1.51 8.06 -52.49 -0.42 1.09 16 29 H 0.09 1.15 7.85 -52.48 -0.41 0.74 16 30 H 0.12 1.88 7.35 -52.49 -0.39 1.50 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 37 H 0.08 0.54 5.65 -51.93 -0.29 0.25 16 38 H 0.07 0.50 8.14 -51.92 -0.42 0.07 16 39 H 0.40 4.56 6.31 -40.82 -0.26 4.30 16 40 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 41 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 42 H 0.13 2.84 5.63 -52.49 -0.30 2.54 16 43 H 0.27 7.44 8.31 -40.82 -0.34 7.11 16 44 H 0.13 3.30 6.52 -52.49 -0.34 2.96 16 LS Contribution 355.29 15.07 5.35 5.35 Total: -1.00 -34.48 355.29 -8.74 -43.21 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -6.03 Total: 9.27 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: -3.27 Total: -13.26 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: 0.17 Total: -44.22 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: 0.06 Total: -16.40 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.48 -8.74 -43.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785698477.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.438 kcal (2) G-P(sol) polarization free energy of solvation -34.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds