Wall clock time and date at job start Tue Mar 31 2020 10:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46984 * 2 1 4 4 C 1.52993 * 109.47717 * 239.99880 * 2 1 3 5 5 S 1.81405 * 109.47089 * 119.99404 * 2 1 3 6 6 O 1.42104 * 109.46967 * 303.61743 * 5 2 1 7 7 C 1.81404 * 102.99825 * 60.00328 * 5 2 1 8 8 C 1.52998 * 109.47043 * 180.02562 * 7 5 2 9 9 N 1.46497 * 109.47065 * 180.02562 * 8 7 5 10 10 C 1.34780 * 119.99719 * 179.97438 * 9 8 7 11 11 O 1.21578 * 120.00108 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99704 * 179.97438 * 10 9 8 13 13 C 1.46498 * 119.99966 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.46847 * 184.79711 * 13 12 10 15 15 C 1.50694 * 115.55031 * 294.81434 * 14 13 12 16 16 H 1.08008 * 119.99906 * 95.20931 * 15 14 13 17 17 C 1.37882 * 120.00284 * 274.93190 * 15 14 13 18 18 N 1.31518 * 119.99808 * 355.41947 * 17 15 14 19 19 Si 1.86800 * 120.00242 * 175.41794 * 17 15 14 20 20 H 1.48502 * 109.47002 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47091 * 119.99801 * 19 17 15 22 22 H 1.48497 * 109.47138 * 240.00628 * 19 17 15 23 23 C 1.53003 * 117.49932 * 80.48760 * 14 13 12 24 24 C 1.52998 * 117.49502 * 149.14904 * 14 13 12 25 25 H 1.08993 * 109.47366 * 300.00269 * 1 2 3 26 26 H 1.08997 * 109.46783 * 60.00975 * 1 2 3 27 27 H 1.09004 * 109.46821 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47258 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47011 * 299.98904 * 3 2 1 30 30 H 1.08993 * 109.47289 * 59.99684 * 3 2 1 31 31 H 1.09004 * 109.46929 * 299.99877 * 4 2 1 32 32 H 1.08997 * 109.47692 * 59.99702 * 4 2 1 33 33 H 1.08998 * 109.47410 * 180.02562 * 4 2 1 34 34 H 1.08997 * 109.46644 * 60.00123 * 7 5 2 35 35 H 1.09000 * 109.46723 * 299.99861 * 7 5 2 36 36 H 1.08996 * 109.47372 * 59.99850 * 8 7 5 37 37 H 1.09003 * 109.46841 * 300.00142 * 8 7 5 38 38 H 0.96996 * 119.99936 * 359.97438 * 9 8 7 39 39 H 0.97009 * 119.99753 * 0.02562 * 12 10 9 40 40 H 1.08993 * 109.47219 * 64.80231 * 13 12 10 41 41 H 1.09000 * 109.47241 * 304.79395 * 13 12 10 42 42 H 0.97001 * 119.99858 * 184.99726 * 18 17 15 43 43 H 1.08997 * 117.49622 * 214.99831 * 23 14 13 44 44 H 1.09000 * 117.49928 * 0.02562 * 23 14 13 45 45 H 1.08996 * 117.50254 * 359.97148 * 24 14 13 46 46 H 1.09005 * 117.49689 * 144.97447 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2491 5 16 2.1346 -0.8550 1.4813 6 8 1.5932 -0.2356 2.6399 7 6 1.4375 -2.5204 1.3043 8 6 1.8624 -3.3804 2.4962 9 7 1.2999 -4.7255 2.3529 10 6 1.5439 -5.6614 3.2916 11 8 2.2312 -5.3895 4.2569 12 7 1.0260 -6.8987 3.1601 13 6 1.2907 -7.9158 4.1806 14 6 0.6935 -9.2524 3.7355 15 6 -0.8091 -9.2891 3.6274 16 1 -1.2864 -9.1128 2.6746 17 6 -1.5744 -9.5533 4.7434 18 7 -0.9924 -9.8619 5.8818 19 14 -3.4377 -9.4728 4.6388 20 1 -3.8405 -9.1074 3.2569 21 1 -4.0107 -10.7978 4.9869 22 1 -3.9431 -8.4497 5.5890 23 6 1.4945 -10.0849 2.7324 24 6 1.4002 -10.5295 4.1941 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6768 -1.7489 -1.2491 32 1 1.6768 -0.2075 -2.1392 33 1 3.1301 -0.7216 -1.2488 34 1 1.8032 -2.9711 0.3817 35 1 0.3498 -2.4573 1.2716 36 1 1.4964 -2.9294 3.4185 37 1 2.9501 -3.4434 2.5293 38 1 0.7519 -4.9425 1.5826 39 1 0.4779 -7.1157 2.3896 40 1 0.8367 -7.6112 5.1235 41 1 2.3669 -8.0252 4.3140 42 1 -1.5300 -10.1184 6.6474 43 1 0.9346 -10.6592 1.9943 44 1 2.4471 -9.6807 2.3899 45 1 2.2907 -10.4177 4.8126 46 1 0.7782 -11.3962 4.4180 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797459565.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:23 Heat of formation + Delta-G solvation = -57.972626 kcal Electronic energy + Delta-G solvation = -24187.352431 eV Core-core repulsion = 20625.248348 eV Total energy + Delta-G solvation = -3562.104083 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.40534 -36.82252 -36.64961 -35.99500 -35.04233 -33.25783 -31.95800 -30.55398 -27.82026 -27.72608 -26.20616 -25.11012 -23.05997 -21.20142 -21.11328 -20.37027 -19.39133 -17.87317 -17.32408 -16.67743 -16.15012 -15.77071 -15.48453 -15.06763 -14.83505 -14.69737 -14.39649 -14.30304 -13.91021 -13.79662 -13.41052 -13.08254 -12.83728 -12.68768 -12.64638 -12.29104 -12.24304 -12.15503 -11.88828 -11.59849 -11.49376 -11.45058 -11.34210 -11.00634 -10.93613 -10.52250 -10.25588 -10.22575 -9.71745 -9.44782 -9.03048 -8.87969 -8.50426 -8.48209 -8.23025 -7.98395 -6.07219 -4.16850 1.11261 2.23607 3.24361 3.24858 3.33854 3.34845 3.51299 3.78614 4.24493 4.31369 4.34808 4.53943 4.66483 4.70214 4.86725 5.10058 5.12316 5.20930 5.23161 5.26566 5.34200 5.36066 5.38949 5.43920 5.63449 5.65505 5.72493 5.76222 5.81840 6.04678 6.35982 6.49179 6.60271 6.71004 6.71862 6.86246 7.13355 7.32297 7.42977 7.45515 7.62009 7.81422 8.34584 8.64794 8.84583 9.18952 9.50215 11.00040 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.019300 B = 0.002504 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.424520 B =11178.871832 C =11715.555397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.388 4.388 3 C -0.125 4.125 4 C -0.123 4.123 5 S 1.262 4.738 6 O -0.835 6.835 7 C -0.466 4.466 8 C 0.163 3.837 9 N -0.752 5.752 10 C 0.697 3.303 11 O -0.602 6.602 12 N -0.720 5.720 13 C 0.181 3.819 14 C 0.024 3.976 15 C -0.499 4.499 16 H 0.059 0.941 17 C 0.073 3.927 18 N -0.874 5.874 19 Si 0.890 3.110 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.210 4.210 24 C -0.142 4.142 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.125 0.875 35 H 0.095 0.905 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.394 0.606 39 H 0.396 0.604 40 H 0.064 0.936 41 H 0.039 0.961 42 H 0.261 0.739 43 H 0.077 0.923 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.253 17.626 -16.688 25.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.486 4.486 3 C -0.183 4.183 4 C -0.182 4.182 5 S 1.458 4.542 6 O -0.831 6.831 7 C -0.603 4.603 8 C 0.037 3.963 9 N -0.410 5.410 10 C 0.396 3.604 11 O -0.482 6.482 12 N -0.373 5.373 13 C 0.058 3.942 14 C 0.023 3.977 15 C -0.537 4.537 16 H 0.077 0.923 17 C -0.131 4.131 18 N -0.510 5.510 19 Si 0.718 3.282 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.248 4.248 24 C -0.180 4.180 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.143 0.857 35 H 0.114 0.886 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.228 0.772 39 H 0.230 0.770 40 H 0.083 0.917 41 H 0.057 0.943 42 H 0.071 0.929 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.398 18.235 -14.799 25.295 hybrid contribution -4.024 -0.227 -0.820 4.113 sum 5.374 18.009 -15.619 24.437 Atomic orbital electron populations 1.21932 0.92831 1.02389 1.03125 1.27186 1.02357 1.05445 1.13612 1.21534 1.01338 0.92500 1.02915 1.21597 1.01674 0.99802 0.95078 1.70763 1.15052 0.84913 0.83424 1.93140 1.79006 1.71467 1.39442 1.28060 1.09894 1.17236 1.05099 1.20522 0.98707 0.81300 0.95729 1.45097 1.57930 1.11275 1.26667 1.16064 0.80792 0.80882 0.82661 1.90877 1.44421 1.80680 1.32190 1.45158 1.54495 1.09758 1.27861 1.20864 0.96898 0.86524 0.89935 1.19055 0.93363 0.87497 0.97786 1.20376 0.88419 1.50231 0.94644 0.92251 1.24995 0.98339 0.94543 0.95268 1.69999 1.35200 1.44108 1.01673 0.86580 0.85843 0.77690 0.78108 1.19800 1.21023 1.20976 1.23009 1.00735 1.07609 0.93420 1.22468 1.00673 1.00910 0.93954 0.92105 0.91846 0.92270 0.91342 0.91583 0.92171 0.91885 0.91866 0.90944 0.85698 0.88630 0.91532 0.90810 0.77234 0.77010 0.91749 0.94305 0.92913 0.90476 0.91697 0.91762 0.89529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 8.29 37.16 0.31 -0.81 16 2 C -0.39 -2.34 0.94 -90.62 -0.08 -2.42 16 3 C -0.12 -0.71 8.48 37.16 0.32 -0.40 16 4 C -0.12 -0.45 8.32 37.15 0.31 -0.14 16 5 S 1.26 9.49 12.09 -107.50 -1.30 8.19 16 6 O -0.84 -11.94 18.10 -35.23 -0.64 -12.58 16 7 C -0.47 -3.68 5.15 37.16 0.19 -3.49 16 8 C 0.16 2.00 5.68 -4.04 -0.02 1.98 16 9 N -0.75 -10.61 5.56 -65.23 -0.36 -10.97 16 10 C 0.70 13.48 8.57 -86.91 -0.74 12.73 16 11 O -0.60 -14.09 16.34 5.30 0.09 -14.00 16 12 N -0.72 -14.15 5.48 -65.23 -0.36 -14.51 16 13 C 0.18 4.18 5.50 -4.04 -0.02 4.16 16 14 C 0.02 0.56 1.47 -155.66 -0.23 0.33 16 15 C -0.50 -12.87 8.59 -34.44 -0.30 -13.16 16 16 H 0.06 1.50 7.82 -52.48 -0.41 1.09 16 17 C 0.07 1.94 5.43 -17.82 -0.10 1.84 16 18 N -0.87 -24.45 12.65 55.43 0.70 -23.75 16 19 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 C -0.21 -4.36 9.96 -26.69 -0.27 -4.63 16 24 C -0.14 -3.26 9.14 -26.69 -0.24 -3.50 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.43 6.68 -51.93 -0.35 0.09 16 28 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.19 6.68 -51.93 -0.35 -0.15 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.07 0.12 8.14 -51.93 -0.42 -0.31 16 34 H 0.12 0.58 6.99 -51.93 -0.36 0.22 16 35 H 0.09 0.84 6.99 -51.92 -0.36 0.47 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.39 4.39 8.49 -40.82 -0.35 4.04 16 39 H 0.40 7.01 8.35 -40.82 -0.34 6.67 16 40 H 0.06 1.71 8.14 -51.93 -0.42 1.28 16 41 H 0.04 0.89 8.09 -51.93 -0.42 0.47 16 42 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 43 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 44 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 46 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 LS Contribution 388.99 15.07 5.86 5.86 Total: -1.00 -36.06 388.99 -9.90 -45.96 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -7.99 Total: 7.55 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -0.88 Total: -7.50 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: -0.02 Total: -49.23 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.55 Total: -26.58 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 9.49 SS G_CDS: -1.30 Total: 8.19 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.06 -9.90 -45.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797459565.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.011 kcal (2) G-P(sol) polarization free energy of solvation -36.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds