Wall clock time and date at job start Tue Mar 31 2020 10:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46984 * 2 1 4 4 C 1.52993 * 109.47717 * 239.99880 * 2 1 3 5 5 S 1.81405 * 109.47089 * 119.99404 * 2 1 3 6 6 O 1.42104 * 109.46967 * 303.61743 * 5 2 1 7 7 C 1.81404 * 102.99825 * 60.00328 * 5 2 1 8 8 C 1.52998 * 109.47043 * 180.02562 * 7 5 2 9 9 N 1.46497 * 109.47065 * 180.02562 * 8 7 5 10 10 C 1.34780 * 119.99719 * 179.97438 * 9 8 7 11 11 O 1.21578 * 120.00108 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99704 * 179.97438 * 10 9 8 13 13 C 1.46498 * 119.99966 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.46847 * 184.79711 * 13 12 10 15 15 C 1.50694 * 115.55031 * 294.81434 * 14 13 12 16 16 H 1.08008 * 119.99906 * 95.20931 * 15 14 13 17 17 C 1.37882 * 120.00284 * 274.93190 * 15 14 13 18 18 N 1.31518 * 119.99808 * 355.41947 * 17 15 14 19 19 Si 1.86800 * 120.00242 * 175.41794 * 17 15 14 20 20 H 1.48502 * 109.47002 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47091 * 119.99801 * 19 17 15 22 22 H 1.48497 * 109.47138 * 240.00628 * 19 17 15 23 23 C 1.53003 * 117.49932 * 80.48760 * 14 13 12 24 24 C 1.52998 * 117.49502 * 149.14904 * 14 13 12 25 25 H 1.08993 * 109.47366 * 300.00269 * 1 2 3 26 26 H 1.08997 * 109.46783 * 60.00975 * 1 2 3 27 27 H 1.09004 * 109.46821 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47258 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47011 * 299.98904 * 3 2 1 30 30 H 1.08993 * 109.47289 * 59.99684 * 3 2 1 31 31 H 1.09004 * 109.46929 * 299.99877 * 4 2 1 32 32 H 1.08997 * 109.47692 * 59.99702 * 4 2 1 33 33 H 1.08998 * 109.47410 * 180.02562 * 4 2 1 34 34 H 1.08997 * 109.46644 * 60.00123 * 7 5 2 35 35 H 1.09000 * 109.46723 * 299.99861 * 7 5 2 36 36 H 1.08996 * 109.47372 * 59.99850 * 8 7 5 37 37 H 1.09003 * 109.46841 * 300.00142 * 8 7 5 38 38 H 0.96996 * 119.99936 * 359.97438 * 9 8 7 39 39 H 0.97009 * 119.99753 * 0.02562 * 12 10 9 40 40 H 1.08993 * 109.47219 * 64.80231 * 13 12 10 41 41 H 1.09000 * 109.47241 * 304.79395 * 13 12 10 42 42 H 0.97001 * 119.99858 * 184.99726 * 18 17 15 43 43 H 1.08997 * 117.49622 * 214.99831 * 23 14 13 44 44 H 1.09000 * 117.49928 * 0.02562 * 23 14 13 45 45 H 1.08996 * 117.50254 * 359.97148 * 24 14 13 46 46 H 1.09005 * 117.49689 * 144.97447 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2491 5 16 2.1346 -0.8550 1.4813 6 8 1.5932 -0.2356 2.6399 7 6 1.4375 -2.5204 1.3043 8 6 1.8624 -3.3804 2.4962 9 7 1.2999 -4.7255 2.3529 10 6 1.5439 -5.6614 3.2916 11 8 2.2312 -5.3895 4.2569 12 7 1.0260 -6.8987 3.1601 13 6 1.2907 -7.9158 4.1806 14 6 0.6935 -9.2524 3.7355 15 6 -0.8091 -9.2891 3.6274 16 1 -1.2864 -9.1128 2.6746 17 6 -1.5744 -9.5533 4.7434 18 7 -0.9924 -9.8619 5.8818 19 14 -3.4377 -9.4728 4.6388 20 1 -3.8405 -9.1074 3.2569 21 1 -4.0107 -10.7978 4.9869 22 1 -3.9431 -8.4497 5.5890 23 6 1.4945 -10.0849 2.7324 24 6 1.4002 -10.5295 4.1941 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6768 -1.7489 -1.2491 32 1 1.6768 -0.2075 -2.1392 33 1 3.1301 -0.7216 -1.2488 34 1 1.8032 -2.9711 0.3817 35 1 0.3498 -2.4573 1.2716 36 1 1.4964 -2.9294 3.4185 37 1 2.9501 -3.4434 2.5293 38 1 0.7519 -4.9425 1.5826 39 1 0.4779 -7.1157 2.3896 40 1 0.8367 -7.6112 5.1235 41 1 2.3669 -8.0252 4.3140 42 1 -1.5300 -10.1184 6.6474 43 1 0.9346 -10.6592 1.9943 44 1 2.4471 -9.6807 2.3899 45 1 2.2907 -10.4177 4.8126 46 1 0.7782 -11.3962 4.4180 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797459565.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:23 Heat of formation + Delta-G solvation = -85.079631 kcal Electronic energy + Delta-G solvation = -24188.527879 eV Core-core repulsion = 20625.248348 eV Total energy + Delta-G solvation = -3563.279531 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.94546 -38.57834 -37.14595 -36.89332 -36.30070 -34.95551 -33.95248 -31.61527 -28.44053 -28.15511 -27.89826 -26.93491 -24.07450 -22.91611 -21.88127 -21.69114 -21.24105 -19.33913 -18.13297 -18.10253 -17.39589 -16.92831 -16.62447 -16.58328 -15.95848 -15.90405 -15.45262 -15.30838 -15.23752 -14.96841 -14.68453 -14.40211 -14.05485 -13.73166 -13.50659 -13.41642 -13.18117 -13.02535 -12.92713 -12.88549 -12.78297 -12.69946 -12.34716 -12.31174 -11.99265 -11.91939 -11.84985 -11.51100 -11.30963 -10.93882 -10.86431 -10.44807 -10.30945 -10.01716 -9.60332 -9.19714 -8.09869 -6.23560 0.45307 1.38897 1.43013 1.51373 1.62427 1.91491 2.23519 2.40901 2.80573 3.18559 3.39401 3.66385 3.70824 3.75680 3.81433 3.98795 4.19291 4.27332 4.46444 4.57285 4.58518 4.63907 4.68466 4.74210 4.76482 4.84033 4.87407 4.88030 5.01689 5.03045 5.05300 5.07762 5.18064 5.28040 5.31746 5.48245 5.52140 5.58018 5.64950 5.74068 5.79134 6.15762 6.37359 6.84723 7.24022 7.45991 7.67418 8.97360 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.019300 B = 0.002504 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.424520 B =11178.871832 C =11715.555397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.376 4.376 3 C -0.131 4.131 4 C -0.127 4.127 5 S 1.297 4.703 6 O -0.912 6.912 7 C -0.455 4.455 8 C 0.156 3.844 9 N -0.730 5.730 10 C 0.693 3.307 11 O -0.647 6.647 12 N -0.714 5.714 13 C 0.198 3.802 14 C 0.001 3.999 15 C -0.501 4.501 16 H 0.065 0.935 17 C 0.021 3.979 18 N -0.908 5.908 19 Si 0.948 3.052 20 H -0.259 1.259 21 H -0.283 1.283 22 H -0.293 1.293 23 C -0.173 4.173 24 C -0.155 4.155 25 H 0.029 0.971 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.032 0.968 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.171 0.829 35 H 0.090 0.910 36 H 0.029 0.971 37 H 0.089 0.911 38 H 0.413 0.587 39 H 0.408 0.592 40 H 0.018 0.982 41 H 0.038 0.962 42 H 0.258 0.742 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.069 0.931 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.790 17.858 -20.614 28.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.475 4.475 3 C -0.189 4.189 4 C -0.185 4.185 5 S 1.496 4.504 6 O -0.907 6.907 7 C -0.592 4.592 8 C 0.030 3.970 9 N -0.388 5.388 10 C 0.392 3.608 11 O -0.529 6.529 12 N -0.368 5.368 13 C 0.073 3.927 14 C 0.001 3.999 15 C -0.539 4.539 16 H 0.083 0.917 17 C -0.179 4.179 18 N -0.546 5.546 19 Si 0.775 3.225 20 H -0.183 1.183 21 H -0.209 1.209 22 H -0.220 1.220 23 C -0.210 4.210 24 C -0.193 4.193 25 H 0.048 0.952 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.112 0.888 29 H 0.096 0.904 30 H 0.052 0.948 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.118 0.882 34 H 0.189 0.811 35 H 0.109 0.891 36 H 0.047 0.953 37 H 0.107 0.893 38 H 0.250 0.750 39 H 0.244 0.756 40 H 0.037 0.963 41 H 0.056 0.944 42 H 0.067 0.933 43 H 0.104 0.896 44 H 0.108 0.892 45 H 0.087 0.913 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.913 18.483 -18.783 28.155 hybrid contribution -4.179 -0.238 0.304 4.197 sum 5.734 18.244 -18.479 26.594 Atomic orbital electron populations 1.22004 0.94229 1.02482 1.02169 1.27097 1.01189 1.05849 1.13410 1.21631 1.03078 0.92020 1.02167 1.21720 1.03549 0.99983 0.93219 1.69870 1.14115 0.84060 0.82326 1.93032 1.80538 1.73432 1.43701 1.28000 1.09740 1.16396 1.05074 1.20678 0.99567 0.80496 0.96228 1.44929 1.57205 1.10805 1.25850 1.16263 0.80353 0.81264 0.82918 1.90849 1.46383 1.81415 1.34299 1.44908 1.54854 1.09523 1.27485 1.20416 0.96214 0.87120 0.88935 1.19061 0.92872 0.87773 1.00244 1.20716 0.89773 1.48809 0.94568 0.91676 1.25722 1.02226 0.94753 0.95197 1.70123 1.36458 1.45726 1.02298 0.85655 0.81288 0.77221 0.78341 1.18326 1.20887 1.21975 1.22994 1.00998 1.05000 0.91965 1.22397 1.00620 0.99938 0.96362 0.95206 0.90682 0.91709 0.88785 0.90421 0.94836 0.90682 0.91342 0.88210 0.81121 0.89124 0.95257 0.89273 0.75048 0.75634 0.96318 0.94352 0.93297 0.89566 0.89158 0.91260 0.91726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 8.29 71.98 0.60 -1.54 16 2 C -0.38 -3.67 0.94 -10.80 -0.01 -3.68 16 3 C -0.13 -1.27 8.48 71.98 0.61 -0.66 16 4 C -0.13 -0.35 8.32 71.98 0.60 0.25 16 5 S 1.30 18.04 12.09 -56.49 -0.68 17.36 16 6 O -0.91 -27.24 18.10 -148.98 -2.70 -29.94 16 7 C -0.46 -6.04 5.15 71.98 0.37 -5.67 16 8 C 0.16 3.64 5.68 86.38 0.49 4.13 16 9 N -0.73 -19.30 5.56 -478.55 -2.66 -21.96 16 10 C 0.69 26.38 8.57 179.05 1.53 27.92 16 11 O -0.65 -30.69 16.34 -3.96 -0.06 -30.75 16 12 N -0.71 -27.42 5.48 -478.54 -2.62 -30.04 16 13 C 0.20 9.19 5.50 86.38 0.48 9.67 16 14 C 0.00 0.06 1.47 -52.93 -0.08 -0.02 16 15 C -0.50 -25.47 8.59 25.60 0.22 -25.25 16 16 H 0.07 3.17 7.82 -2.91 -0.02 3.15 16 17 C 0.02 1.15 5.43 84.66 0.46 1.61 16 18 N -0.91 -51.97 12.65 21.45 0.27 -51.70 16 19 Si 0.95 42.68 29.54 68.60 2.03 44.71 16 20 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 23 C -0.17 -6.73 9.96 30.62 0.30 -6.42 16 24 C -0.15 -7.07 9.14 30.62 0.28 -6.79 16 25 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.06 0.82 6.68 -2.38 -0.02 0.81 16 28 H 0.09 0.42 8.14 -2.38 -0.02 0.40 16 29 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.07 0.06 6.68 -2.38 -0.02 0.05 16 32 H 0.07 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.10 -0.21 8.14 -2.39 -0.02 -0.23 16 34 H 0.17 0.71 6.99 -2.39 -0.02 0.69 16 35 H 0.09 1.38 6.99 -2.39 -0.02 1.37 16 36 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.41 7.90 8.49 -92.71 -0.79 7.11 16 39 H 0.41 13.61 8.35 -92.70 -0.77 12.83 16 40 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.04 1.76 8.09 -2.39 -0.02 1.74 16 42 H 0.26 14.24 8.32 -92.71 -0.77 13.47 16 43 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 44 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 45 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 46 H 0.06 3.21 8.14 -2.38 -0.02 3.19 16 Total: -1.00 -82.31 388.99 -1.17 -83.47 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: -0.59 Total: 25.31 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: 5.85 Total: -6.47 kcal Atomic # 7 Polarization: -98.68 SS G_CDS: -5.01 Total: -103.69 kcal Atomic # 8 Polarization: -57.93 SS G_CDS: -2.76 Total: -60.69 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Atomic # 16 Polarization: 18.04 SS G_CDS: -0.68 Total: 17.36 kcal Total: -82.31 -1.17 -83.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797459565.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.605 kcal (2) G-P(sol) polarization free energy of solvation -82.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds