Wall clock time and date at job start Tue Mar 31 2020 10:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47327 * 2 1 4 4 C 1.52995 * 109.47298 * 239.99587 * 2 1 3 5 5 S 1.81408 * 109.46679 * 119.99421 * 2 1 3 6 6 O 1.42100 * 109.46867 * 176.38771 * 5 2 1 7 7 C 1.81403 * 102.99600 * 60.00195 * 5 2 1 8 8 C 1.53003 * 109.46906 * 179.97438 * 7 5 2 9 9 N 1.46498 * 109.47267 * 180.02562 * 8 7 5 10 10 C 1.34779 * 119.99961 * 180.02562 * 9 8 7 11 11 O 1.21584 * 120.00205 * 4.67641 * 10 9 8 12 12 N 1.34778 * 119.99537 * 184.68371 * 10 9 8 13 13 C 1.46498 * 119.99663 * 184.72934 * 12 10 9 14 14 C 1.52998 * 109.47310 * 184.70876 * 13 12 10 15 15 C 1.50704 * 115.54563 * 294.79303 * 14 13 12 16 16 H 1.08007 * 119.99953 * 121.64940 * 15 14 13 17 17 C 1.37876 * 120.00263 * 301.36461 * 15 14 13 18 18 N 1.31515 * 120.00022 * 173.19088 * 17 15 14 19 19 Si 1.86800 * 119.99944 * 353.19993 * 17 15 14 20 20 H 1.48499 * 109.47522 * 94.23656 * 19 17 15 21 21 H 1.48507 * 109.47256 * 214.23911 * 19 17 15 22 22 H 1.48507 * 109.46899 * 334.23708 * 19 17 15 23 23 C 1.53001 * 117.50012 * 80.46176 * 14 13 12 24 24 C 1.53001 * 117.50291 * 149.12365 * 14 13 12 25 25 H 1.08997 * 109.47038 * 300.00971 * 1 2 3 26 26 H 1.09006 * 109.46550 * 60.00264 * 1 2 3 27 27 H 1.08996 * 109.46983 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47150 * 179.97438 * 3 2 1 29 29 H 1.09005 * 109.46601 * 299.99594 * 3 2 1 30 30 H 1.08996 * 109.47361 * 59.99348 * 3 2 1 31 31 H 1.09005 * 109.47169 * 300.00213 * 4 2 1 32 32 H 1.08995 * 109.47357 * 60.00093 * 4 2 1 33 33 H 1.08999 * 109.47229 * 180.02562 * 4 2 1 34 34 H 1.08995 * 109.47370 * 60.00079 * 7 5 2 35 35 H 1.08999 * 109.47179 * 299.99504 * 7 5 2 36 36 H 1.08997 * 109.47441 * 59.99790 * 8 7 5 37 37 H 1.08999 * 109.46888 * 299.99794 * 8 7 5 38 38 H 0.97001 * 120.00008 * 359.97438 * 9 8 7 39 39 H 0.96995 * 120.00503 * 4.73507 * 12 10 9 40 40 H 1.08998 * 109.47069 * 64.70597 * 13 12 10 41 41 H 1.09003 * 109.47733 * 304.70710 * 13 12 10 42 42 H 0.97002 * 119.99557 * 179.97438 * 18 17 15 43 43 H 1.09000 * 117.49568 * 215.00735 * 23 14 13 44 44 H 1.08993 * 117.49839 * 0.02562 * 23 14 13 45 45 H 1.08999 * 117.49851 * 359.97438 * 24 14 13 46 46 H 1.08997 * 117.49732 * 144.97003 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 16 2.1346 -0.8550 1.4813 6 8 3.5531 -0.9286 1.4399 7 6 1.4374 -2.5203 1.3042 8 6 1.8632 -3.3808 2.4955 9 7 1.3007 -4.7259 2.3523 10 6 1.5445 -5.6618 3.2910 11 8 2.1594 -5.3674 4.2977 12 7 1.1069 -6.9241 3.1135 13 6 1.2805 -7.9159 4.1777 14 6 0.8088 -9.2842 3.6815 15 6 -0.6633 -9.3934 3.3780 16 1 -0.9911 -9.6773 2.3888 17 6 -1.5915 -9.1367 4.3646 18 7 -2.8725 -9.1003 4.0689 19 14 -1.0297 -8.8402 6.1213 20 1 -0.8799 -7.3812 6.3536 21 1 -2.0376 -9.3905 7.0629 22 1 0.2751 -9.5134 6.3439 23 6 1.7722 -10.0890 2.8068 24 6 1.5064 -10.5212 4.2510 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 3.1301 1.4425 0.0005 29 1 1.6768 1.9563 -0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.6767 -1.7490 -1.2491 32 1 1.6768 -0.2076 -2.1391 33 1 3.1301 -0.7217 -1.2489 34 1 1.8030 -2.9712 0.3817 35 1 0.3497 -2.4572 1.2716 36 1 1.4979 -2.9302 3.4183 37 1 2.9509 -3.4439 2.5278 38 1 0.7521 -4.9427 1.5823 39 1 0.6772 -7.1760 2.2812 40 1 0.6926 -7.6223 5.0473 41 1 2.3335 -7.9727 4.4534 42 1 -3.5255 -8.9200 4.7631 43 1 1.3411 -10.6974 2.0117 44 1 2.7420 -9.6439 2.5851 45 1 2.3016 -10.3601 4.9788 46 1 0.9005 -11.4137 4.4065 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797459571.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:27 Heat of formation + Delta-G solvation = -53.084872 kcal Electronic energy + Delta-G solvation = -24399.822854 eV Core-core repulsion = 20837.930720 eV Total energy + Delta-G solvation = -3561.892134 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.52029 -37.16865 -36.64255 -36.00229 -35.10250 -33.36820 -32.21239 -30.61288 -27.82576 -27.71550 -26.67803 -25.07943 -23.10066 -21.60822 -21.13523 -20.47023 -19.31862 -17.94573 -17.35017 -16.80726 -16.33402 -15.86893 -15.53569 -15.19907 -15.03699 -14.77856 -14.37241 -14.30280 -13.99109 -13.88349 -13.25431 -13.18730 -12.94712 -12.83347 -12.67860 -12.42634 -12.23631 -12.19668 -12.16775 -12.06450 -11.57070 -11.45997 -11.34573 -11.05749 -10.67386 -10.56261 -10.26777 -10.24454 -9.79920 -9.50335 -9.19891 -8.95078 -8.81579 -8.51455 -8.48479 -8.12873 -6.20064 -4.21440 1.10947 2.23605 3.16726 3.29879 3.39014 3.45257 3.49546 3.68417 4.25589 4.32239 4.37728 4.53257 4.64539 4.67933 4.71031 5.01226 5.11360 5.13722 5.21971 5.23890 5.27788 5.35510 5.37614 5.45195 5.64047 5.65114 5.68585 5.71534 5.76676 5.81450 5.96778 6.15030 6.26952 6.45155 6.50138 6.67113 6.71403 6.92453 7.07960 7.19922 7.42221 7.66120 8.39521 8.55075 8.81670 9.08585 9.44094 10.90864 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.021423 B = 0.002639 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.697011 B =10606.063289 C =10907.710462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.387 4.387 3 C -0.124 4.124 4 C -0.145 4.145 5 S 1.262 4.738 6 O -0.837 6.837 7 C -0.466 4.466 8 C 0.163 3.837 9 N -0.749 5.749 10 C 0.699 3.301 11 O -0.604 6.604 12 N -0.718 5.718 13 C 0.171 3.829 14 C -0.016 4.016 15 C -0.489 4.489 16 H 0.077 0.923 17 C 0.083 3.917 18 N -0.892 5.892 19 Si 0.870 3.130 20 H -0.277 1.277 21 H -0.293 1.293 22 H -0.252 1.252 23 C -0.181 4.181 24 C -0.188 4.188 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.095 0.905 35 H 0.127 0.873 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.397 0.603 39 H 0.403 0.597 40 H 0.054 0.946 41 H 0.049 0.951 42 H 0.266 0.734 43 H 0.084 0.916 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.522 19.555 -8.226 21.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.485 4.485 3 C -0.183 4.183 4 C -0.202 4.202 5 S 1.459 4.541 6 O -0.832 6.832 7 C -0.603 4.603 8 C 0.037 3.963 9 N -0.407 5.407 10 C 0.399 3.601 11 O -0.483 6.483 12 N -0.371 5.371 13 C 0.047 3.953 14 C -0.017 4.017 15 C -0.526 4.526 16 H 0.095 0.905 17 C -0.120 4.120 18 N -0.528 5.528 19 Si 0.698 3.302 20 H -0.203 1.203 21 H -0.220 1.220 22 H -0.176 1.176 23 C -0.218 4.218 24 C -0.227 4.227 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.114 0.886 35 H 0.145 0.855 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.231 0.769 39 H 0.238 0.762 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.103 0.897 44 H 0.091 0.909 45 H 0.089 0.911 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.494 20.183 -6.501 21.904 hybrid contribution 0.278 -1.137 -1.834 2.176 sum 5.772 19.045 -8.335 21.576 Atomic orbital electron populations 1.21609 0.90509 1.02813 1.03311 1.27179 1.03516 1.04964 1.12869 1.21535 1.01263 0.92424 1.03059 1.21931 1.01393 0.99878 0.97044 1.70816 0.91628 0.90136 1.01540 1.93123 1.26002 1.83246 1.80873 1.28063 1.10654 1.17434 1.04148 1.20540 0.98530 0.81374 0.95827 1.45073 1.57574 1.11162 1.26912 1.16020 0.80045 0.80999 0.83055 1.90871 1.47102 1.81033 1.29340 1.44987 1.63378 1.07955 1.20819 1.20952 0.98423 0.87206 0.88686 1.19607 0.94599 0.87407 1.00115 1.20247 0.85678 1.47735 0.98965 0.90456 1.24910 0.94573 0.93665 0.98870 1.69897 1.00911 1.48221 1.33818 0.86999 0.79487 0.78822 0.84846 1.20323 1.21989 1.17588 1.22774 0.99548 1.05504 0.93988 1.23063 1.03108 1.01306 0.95175 0.90913 0.91827 0.91802 0.92200 0.91561 0.91334 0.92263 0.91820 0.92154 0.88631 0.85523 0.90655 0.91620 0.76919 0.76237 0.92852 0.93260 0.92454 0.89713 0.90893 0.91093 0.89264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.51 8.32 37.16 0.31 -0.20 16 2 C -0.39 -2.40 0.94 -90.62 -0.08 -2.49 16 3 C -0.12 -0.73 8.48 37.16 0.32 -0.41 16 4 C -0.14 -1.11 8.29 37.15 0.31 -0.80 16 5 S 1.26 9.65 12.09 -107.50 -1.30 8.35 16 6 O -0.84 -11.77 18.10 -35.23 -0.64 -12.40 16 7 C -0.47 -3.78 5.15 37.16 0.19 -3.59 16 8 C 0.16 2.01 5.69 -4.04 -0.02 1.99 16 9 N -0.75 -10.79 5.56 -65.23 -0.36 -11.15 16 10 C 0.70 13.54 8.55 -86.92 -0.74 12.79 16 11 O -0.60 -13.88 16.33 5.29 0.09 -13.80 16 12 N -0.72 -14.12 5.48 -65.23 -0.36 -14.48 16 13 C 0.17 3.77 5.08 -4.04 -0.02 3.75 16 14 C -0.02 -0.36 0.85 -155.66 -0.13 -0.49 16 15 C -0.49 -12.75 9.19 -34.44 -0.32 -13.07 16 16 H 0.08 2.18 8.06 -52.48 -0.42 1.75 16 17 C 0.08 2.28 5.46 -17.82 -0.10 2.19 16 18 N -0.89 -25.91 13.96 55.43 0.77 -25.13 16 19 Si 0.87 21.40 24.69 -169.99 -4.20 17.20 16 20 H -0.28 -6.95 6.96 56.52 0.39 -6.56 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.25 -5.90 6.12 56.52 0.35 -5.56 16 23 C -0.18 -3.51 9.96 -26.69 -0.27 -3.78 16 24 C -0.19 -3.87 8.70 -26.69 -0.23 -4.10 16 25 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.24 6.68 -51.93 -0.35 -0.11 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.43 6.68 -51.93 -0.35 0.08 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.82 6.99 -51.93 -0.36 0.46 16 35 H 0.13 0.69 6.99 -51.92 -0.36 0.32 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.40 4.63 8.50 -40.82 -0.35 4.29 16 39 H 0.40 7.30 8.36 -40.82 -0.34 6.96 16 40 H 0.05 1.29 4.25 -51.93 -0.22 1.07 16 41 H 0.05 1.06 8.06 -51.93 -0.42 0.64 16 42 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 43 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 44 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 46 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 LS Contribution 379.77 15.07 5.72 5.72 Total: -1.00 -36.49 379.77 -8.93 -45.42 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -7.87 Total: 8.48 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -0.79 Total: -8.21 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: 0.05 Total: -50.76 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -0.55 Total: -26.20 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.20 Total: 17.20 kcal Atomic # 16 Polarization: 9.65 SS G_CDS: -1.30 Total: 8.35 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.49 -8.93 -45.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797459571.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.667 kcal (2) G-P(sol) polarization free energy of solvation -36.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds