Wall clock time and date at job start Tue Mar 31 2020 10:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47327 * 2 1 4 4 C 1.52995 * 109.47298 * 239.99587 * 2 1 3 5 5 S 1.81408 * 109.46679 * 119.99421 * 2 1 3 6 6 O 1.42100 * 109.46867 * 176.38771 * 5 2 1 7 7 C 1.81403 * 102.99600 * 60.00195 * 5 2 1 8 8 C 1.53003 * 109.46906 * 179.97438 * 7 5 2 9 9 N 1.46498 * 109.47267 * 180.02562 * 8 7 5 10 10 C 1.34779 * 119.99961 * 180.02562 * 9 8 7 11 11 O 1.21584 * 120.00205 * 4.67641 * 10 9 8 12 12 N 1.34778 * 119.99537 * 184.68371 * 10 9 8 13 13 C 1.46498 * 119.99663 * 184.72934 * 12 10 9 14 14 C 1.52998 * 109.47310 * 184.70876 * 13 12 10 15 15 C 1.50704 * 115.54563 * 294.79303 * 14 13 12 16 16 H 1.08007 * 119.99953 * 121.64940 * 15 14 13 17 17 C 1.37876 * 120.00263 * 301.36461 * 15 14 13 18 18 N 1.31515 * 120.00022 * 173.19088 * 17 15 14 19 19 Si 1.86800 * 119.99944 * 353.19993 * 17 15 14 20 20 H 1.48499 * 109.47522 * 94.23656 * 19 17 15 21 21 H 1.48507 * 109.47256 * 214.23911 * 19 17 15 22 22 H 1.48507 * 109.46899 * 334.23708 * 19 17 15 23 23 C 1.53001 * 117.50012 * 80.46176 * 14 13 12 24 24 C 1.53001 * 117.50291 * 149.12365 * 14 13 12 25 25 H 1.08997 * 109.47038 * 300.00971 * 1 2 3 26 26 H 1.09006 * 109.46550 * 60.00264 * 1 2 3 27 27 H 1.08996 * 109.46983 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47150 * 179.97438 * 3 2 1 29 29 H 1.09005 * 109.46601 * 299.99594 * 3 2 1 30 30 H 1.08996 * 109.47361 * 59.99348 * 3 2 1 31 31 H 1.09005 * 109.47169 * 300.00213 * 4 2 1 32 32 H 1.08995 * 109.47357 * 60.00093 * 4 2 1 33 33 H 1.08999 * 109.47229 * 180.02562 * 4 2 1 34 34 H 1.08995 * 109.47370 * 60.00079 * 7 5 2 35 35 H 1.08999 * 109.47179 * 299.99504 * 7 5 2 36 36 H 1.08997 * 109.47441 * 59.99790 * 8 7 5 37 37 H 1.08999 * 109.46888 * 299.99794 * 8 7 5 38 38 H 0.97001 * 120.00008 * 359.97438 * 9 8 7 39 39 H 0.96995 * 120.00503 * 4.73507 * 12 10 9 40 40 H 1.08998 * 109.47069 * 64.70597 * 13 12 10 41 41 H 1.09003 * 109.47733 * 304.70710 * 13 12 10 42 42 H 0.97002 * 119.99557 * 179.97438 * 18 17 15 43 43 H 1.09000 * 117.49568 * 215.00735 * 23 14 13 44 44 H 1.08993 * 117.49839 * 0.02562 * 23 14 13 45 45 H 1.08999 * 117.49851 * 359.97438 * 24 14 13 46 46 H 1.08997 * 117.49732 * 144.97003 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 16 2.1346 -0.8550 1.4813 6 8 3.5531 -0.9286 1.4399 7 6 1.4374 -2.5203 1.3042 8 6 1.8632 -3.3808 2.4955 9 7 1.3007 -4.7259 2.3523 10 6 1.5445 -5.6618 3.2910 11 8 2.1594 -5.3674 4.2977 12 7 1.1069 -6.9241 3.1135 13 6 1.2805 -7.9159 4.1777 14 6 0.8088 -9.2842 3.6815 15 6 -0.6633 -9.3934 3.3780 16 1 -0.9911 -9.6773 2.3888 17 6 -1.5915 -9.1367 4.3646 18 7 -2.8725 -9.1003 4.0689 19 14 -1.0297 -8.8402 6.1213 20 1 -0.8799 -7.3812 6.3536 21 1 -2.0376 -9.3905 7.0629 22 1 0.2751 -9.5134 6.3439 23 6 1.7722 -10.0890 2.8068 24 6 1.5064 -10.5212 4.2510 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 3.1301 1.4425 0.0005 29 1 1.6768 1.9563 -0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.6767 -1.7490 -1.2491 32 1 1.6768 -0.2076 -2.1391 33 1 3.1301 -0.7217 -1.2489 34 1 1.8030 -2.9712 0.3817 35 1 0.3497 -2.4572 1.2716 36 1 1.4979 -2.9302 3.4183 37 1 2.9509 -3.4439 2.5278 38 1 0.7521 -4.9427 1.5823 39 1 0.6772 -7.1760 2.2812 40 1 0.6926 -7.6223 5.0473 41 1 2.3335 -7.9727 4.4534 42 1 -3.5255 -8.9200 4.7631 43 1 1.3411 -10.6974 2.0117 44 1 2.7420 -9.6439 2.5851 45 1 2.3016 -10.3601 4.9788 46 1 0.9005 -11.4137 4.4065 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797459571.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:27 Heat of formation + Delta-G solvation = -81.617627 kcal Electronic energy + Delta-G solvation = -24401.060127 eV Core-core repulsion = 20837.930720 eV Total energy + Delta-G solvation = -3563.129407 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.03173 -38.83743 -37.15504 -36.89496 -36.33878 -34.99169 -34.27643 -31.66888 -28.60978 -28.29159 -28.04513 -26.88625 -24.11873 -23.20160 -21.93884 -21.70105 -21.11937 -19.43668 -18.41905 -18.12434 -17.45953 -17.19024 -16.74525 -16.65010 -15.98698 -15.74933 -15.50997 -15.38689 -15.23173 -14.88779 -14.86065 -14.69202 -14.24424 -14.00504 -13.80272 -13.50853 -13.18666 -13.05394 -12.99897 -12.80703 -12.72682 -12.60124 -12.33055 -12.17091 -12.06595 -11.93009 -11.86233 -11.57722 -11.39327 -11.04443 -10.87675 -10.71313 -10.38669 -10.31611 -9.66416 -9.19686 -8.31069 -6.33068 0.43592 1.33129 1.39857 1.49639 1.60610 1.85888 2.15366 2.34984 2.78258 2.95240 3.30239 3.54536 3.68715 3.74944 3.80283 3.96792 4.01629 4.18329 4.29576 4.43581 4.47483 4.53274 4.57098 4.63487 4.72650 4.76126 4.83122 4.87641 4.88975 4.91387 5.01442 5.05123 5.06235 5.16394 5.24852 5.27057 5.44337 5.49737 5.50438 5.61424 5.69780 6.07578 6.30799 6.72010 7.14923 7.34421 7.59176 8.83202 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.021423 B = 0.002639 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.697011 B =10606.063289 C =10907.710462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.376 4.376 3 C -0.130 4.130 4 C -0.150 4.150 5 S 1.297 4.703 6 O -0.907 6.907 7 C -0.457 4.457 8 C 0.156 3.844 9 N -0.731 5.731 10 C 0.694 3.306 11 O -0.643 6.643 12 N -0.718 5.718 13 C 0.177 3.823 14 C -0.040 4.040 15 C -0.476 4.476 16 H 0.047 0.953 17 C 0.038 3.962 18 N -0.936 5.936 19 Si 0.918 3.082 20 H -0.287 1.287 21 H -0.296 1.296 22 H -0.233 1.233 23 C -0.156 4.156 24 C -0.184 4.184 25 H 0.097 0.903 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.035 0.965 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.032 0.968 34 H 0.094 0.906 35 H 0.164 0.836 36 H 0.083 0.917 37 H 0.039 0.961 38 H 0.412 0.588 39 H 0.410 0.590 40 H 0.030 0.970 41 H 0.056 0.944 42 H 0.265 0.735 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.090 0.910 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.334 20.366 -8.731 22.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.476 4.476 3 C -0.188 4.188 4 C -0.208 4.208 5 S 1.496 4.504 6 O -0.903 6.903 7 C -0.594 4.594 8 C 0.031 3.969 9 N -0.389 5.389 10 C 0.394 3.606 11 O -0.525 6.525 12 N -0.371 5.371 13 C 0.052 3.948 14 C -0.041 4.041 15 C -0.513 4.513 16 H 0.066 0.934 17 C -0.161 4.161 18 N -0.575 5.575 19 Si 0.745 3.255 20 H -0.214 1.214 21 H -0.223 1.223 22 H -0.155 1.155 23 C -0.193 4.193 24 C -0.223 4.223 25 H 0.116 0.884 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.054 0.946 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.051 0.949 34 H 0.113 0.887 35 H 0.182 0.818 36 H 0.102 0.898 37 H 0.057 0.943 38 H 0.249 0.751 39 H 0.245 0.755 40 H 0.048 0.952 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.105 0.895 44 H 0.114 0.886 45 H 0.109 0.891 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.325 20.990 -7.040 22.770 hybrid contribution 0.317 -1.349 -1.832 2.297 sum 5.642 19.641 -8.872 22.278 Atomic orbital electron populations 1.21723 0.88040 1.03948 1.04891 1.27092 1.05277 1.04559 1.10640 1.21625 0.99875 0.92485 1.04859 1.21995 0.99738 1.00669 0.98391 1.70026 0.89067 0.89178 1.02122 1.93019 1.29860 1.84314 1.83080 1.28008 1.12905 1.16415 1.02054 1.20691 0.97069 0.80895 0.98283 1.44986 1.56785 1.11005 1.26166 1.16231 0.79700 0.81360 0.83356 1.90840 1.48845 1.81634 1.31205 1.44898 1.63602 1.08012 1.20630 1.20757 0.98237 0.87245 0.88514 1.19452 0.92945 0.88429 1.03279 1.20355 0.87864 1.45776 0.97320 0.93447 1.25498 0.94551 0.94151 1.01885 1.69998 1.02000 1.50719 1.34763 0.86236 0.79798 0.78060 0.81370 1.21446 1.22313 1.15548 1.22813 0.99440 1.03618 0.93451 1.23114 1.02977 0.99607 0.96561 0.88418 0.91306 0.90931 0.94567 0.90442 0.88941 0.91751 0.90734 0.94867 0.88719 0.81828 0.89834 0.94272 0.75112 0.75463 0.95198 0.92562 0.92549 0.89480 0.88598 0.89114 0.89731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.58 8.32 71.98 0.60 0.02 16 2 C -0.38 -3.92 0.94 -10.79 -0.01 -3.93 16 3 C -0.13 -1.31 8.48 71.98 0.61 -0.70 16 4 C -0.15 -2.12 8.29 71.98 0.60 -1.53 16 5 S 1.30 18.49 12.09 -56.49 -0.68 17.81 16 6 O -0.91 -26.29 18.10 -148.98 -2.70 -28.99 16 7 C -0.46 -6.48 5.15 71.98 0.37 -6.11 16 8 C 0.16 3.69 5.69 86.38 0.49 4.18 16 9 N -0.73 -20.02 5.56 -478.54 -2.66 -22.68 16 10 C 0.69 26.26 8.55 179.05 1.53 27.79 16 11 O -0.64 -29.35 16.33 -3.98 -0.07 -29.42 16 12 N -0.72 -27.41 5.48 -478.54 -2.62 -30.03 16 13 C 0.18 7.55 5.08 86.38 0.44 7.98 16 14 C -0.04 -1.70 0.85 -52.93 -0.04 -1.75 16 15 C -0.48 -24.68 9.19 25.60 0.24 -24.44 16 16 H 0.05 2.70 8.06 -2.91 -0.02 2.67 16 17 C 0.04 2.11 5.46 84.65 0.46 2.57 16 18 N -0.94 -55.10 13.96 21.45 0.30 -54.81 16 19 Si 0.92 44.06 24.69 68.60 1.69 45.76 16 20 H -0.29 -14.20 6.96 99.48 0.69 -13.51 16 21 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 22 H -0.23 -10.29 6.12 99.48 0.61 -9.68 16 23 C -0.16 -5.62 9.96 30.62 0.30 -5.32 16 24 C -0.18 -7.07 8.70 30.62 0.27 -6.80 16 25 H 0.10 0.00 8.14 -2.39 -0.02 -0.02 16 26 H 0.07 0.32 8.14 -2.38 -0.02 0.30 16 27 H 0.07 0.23 6.68 -2.39 -0.02 0.22 16 28 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.82 6.68 -2.38 -0.02 0.81 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.09 1.44 6.99 -2.39 -0.02 1.42 16 35 H 0.16 1.12 6.99 -2.39 -0.02 1.10 16 36 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.41 8.73 8.50 -92.71 -0.79 7.94 16 39 H 0.41 14.34 8.36 -92.71 -0.78 13.57 16 40 H 0.03 1.42 4.25 -2.39 -0.01 1.41 16 41 H 0.06 2.31 8.06 -2.39 -0.02 2.29 16 42 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 43 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 44 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 45 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 46 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 Total: -1.00 -81.06 379.77 -1.58 -82.64 By element: Atomic # 1 Polarization: 28.44 SS G_CDS: -0.70 Total: 27.75 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: 5.85 Total: -8.02 kcal Atomic # 7 Polarization: -102.53 SS G_CDS: -4.99 Total: -107.52 kcal Atomic # 8 Polarization: -55.65 SS G_CDS: -2.76 Total: -58.41 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.69 Total: 45.76 kcal Atomic # 16 Polarization: 18.49 SS G_CDS: -0.68 Total: 17.81 kcal Total: -81.06 -1.58 -82.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797459571.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.022 kcal (2) G-P(sol) polarization free energy of solvation -81.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds