Wall clock time and date at job start Tue Mar 31 2020 10:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47503 * 2 1 4 4 H 1.08997 * 109.46991 * 305.00514 * 3 2 1 5 5 C 1.52999 * 109.46714 * 65.00529 * 3 2 1 6 6 C 1.53000 * 109.47072 * 185.00410 * 3 2 1 7 7 O 1.42902 * 109.46703 * 175.00225 * 6 3 2 8 8 N 1.41602 * 113.99971 * 184.98096 * 7 6 3 9 9 C 1.34768 * 120.00323 * 174.98642 * 8 7 6 10 10 O 1.21670 * 119.99703 * 4.68379 * 9 8 7 11 11 C 1.46891 * 120.00184 * 184.69231 * 9 8 7 12 12 C 1.36126 * 125.43205 * 185.50791 * 11 9 8 13 13 C 1.41702 * 107.74197 * 179.97438 * 12 11 9 14 14 C 1.40021 * 133.34679 * 179.97438 * 13 12 11 15 15 C 1.36581 * 119.83208 * 180.02562 * 14 13 12 16 16 C 1.38857 * 120.59565 * 359.97438 * 15 14 13 17 17 C 1.37841 * 120.63491 * 0.24811 * 16 15 14 18 18 C 1.39083 * 119.81417 * 359.54680 * 17 16 15 19 19 N 1.37841 * 133.16504 * 180.10386 * 18 17 16 20 20 C 1.36886 * 125.61827 * 0.29694 * 19 18 17 21 21 H 1.08004 * 120.00159 * 126.23162 * 20 19 18 22 22 C 1.39011 * 120.00474 * 306.23000 * 20 19 18 23 23 N 1.31348 * 120.00442 * 183.85350 * 22 20 19 24 24 Si 1.86802 * 119.99681 * 3.85813 * 22 20 19 25 25 H 1.48506 * 109.47257 * 94.90711 * 24 22 20 26 26 H 1.48499 * 109.47056 * 214.90560 * 24 22 20 27 27 H 1.48498 * 109.47002 * 334.91003 * 24 22 20 28 28 H 1.08995 * 109.47359 * 59.99401 * 1 2 3 29 29 H 1.09000 * 109.47366 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46350 * 299.99674 * 1 2 3 31 31 H 1.09010 * 109.46901 * 240.00016 * 2 1 3 32 32 H 1.09002 * 109.47406 * 120.01026 * 2 1 3 33 33 H 1.08994 * 109.47030 * 180.02562 * 5 3 2 34 34 H 1.09005 * 109.46691 * 300.00042 * 5 3 2 35 35 H 1.08996 * 109.47572 * 59.99713 * 5 3 2 36 36 H 1.09000 * 109.47095 * 54.99996 * 6 3 2 37 37 H 1.09003 * 109.46813 * 294.99771 * 6 3 2 38 38 H 0.97000 * 119.99562 * 354.99218 * 8 7 6 39 39 H 1.07992 * 126.12920 * 359.95001 * 12 11 9 40 40 H 1.07998 * 120.08338 * 0.02562 * 14 13 12 41 41 H 1.07994 * 119.70074 * 179.97438 * 15 14 13 42 42 H 1.07999 * 119.67849 * 180.02562 * 16 15 14 43 43 H 1.08001 * 120.09345 * 179.70544 * 17 16 15 44 44 H 0.97003 * 120.00132 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8417 5 6 1.6355 2.1264 1.3074 6 6 3.5649 1.4442 -0.1258 7 8 4.0316 2.7898 -0.2429 8 7 5.4239 2.8982 -0.4769 9 6 5.9766 4.1055 -0.7076 10 8 5.2956 5.1109 -0.6307 11 6 7.4009 4.2077 -1.0520 12 6 8.0951 5.3689 -1.2025 13 6 9.4318 5.0333 -1.5319 14 6 10.5762 5.7948 -1.7982 15 6 11.7543 5.1702 -2.0940 16 6 11.8291 3.7842 -2.1329 17 6 10.7150 3.0133 -1.8788 18 6 9.5052 3.6266 -1.5711 19 7 8.2500 3.1402 -1.2746 20 6 7.9021 1.8179 -1.2105 21 1 7.4238 1.4276 -0.3243 22 6 8.1643 0.9772 -2.2861 23 7 7.7630 -0.2731 -2.2556 24 14 9.0876 1.6256 -3.7749 25 1 10.5332 1.3160 -3.6344 26 1 8.5604 0.9803 -5.0040 27 1 8.9033 3.0961 -3.8697 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8901 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5140 0.8899 33 1 1.9984 3.1541 1.3073 34 1 0.5491 2.1251 1.3970 35 1 2.0700 1.5873 2.1492 36 1 3.8571 0.8799 -1.0114 37 1 4.0030 0.9834 0.7596 38 1 5.9800 2.1034 -0.4713 39 1 7.6981 6.3670 -1.0912 40 1 10.5275 6.8733 -1.7699 41 1 12.6355 5.7596 -2.2995 42 1 12.7683 3.3058 -2.3680 43 1 10.7820 1.9360 -1.9161 44 1 7.9463 -0.8598 -3.0060 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816975196.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:14 Heat of formation + Delta-G solvation = 5.950150 kcal Electronic energy + Delta-G solvation = -26441.510605 eV Core-core repulsion = 22746.734470 eV Total energy + Delta-G solvation = -3694.776135 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.56905 -40.31062 -38.94697 -37.83287 -36.86006 -35.46224 -33.48140 -33.11866 -30.99290 -30.64116 -29.74444 -27.69816 -26.79631 -24.99471 -24.16022 -22.86048 -22.18470 -21.37374 -20.80084 -20.38207 -18.93754 -18.40847 -17.69874 -17.11017 -16.83152 -16.37373 -16.22573 -16.09967 -15.66774 -15.55323 -15.06261 -14.98594 -14.92291 -14.81570 -14.47703 -14.04001 -13.93256 -13.68810 -13.24435 -13.15895 -12.95113 -12.71054 -12.64644 -12.52128 -12.35483 -12.09371 -11.93202 -11.89965 -11.69564 -11.64065 -11.51091 -11.31371 -11.17707 -10.48967 -10.01124 -9.04881 -8.89662 -8.63371 -6.81560 -0.11591 0.83108 0.88904 1.07514 1.17302 1.27760 1.37511 1.99820 2.27898 2.33703 2.58030 3.09709 3.38079 3.69459 3.73270 3.79580 3.96145 4.06045 4.26307 4.27655 4.29433 4.34796 4.53538 4.54669 4.59453 4.62626 4.66968 4.75420 4.76987 4.95786 4.99348 5.06733 5.07517 5.14792 5.15807 5.21660 5.33992 5.37578 5.47589 5.60482 5.64605 5.69771 5.77492 5.88041 5.96439 6.26678 6.35199 6.66812 7.13756 7.15721 8.16583 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.017998 B = 0.003893 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.327912 B = 7191.250036 C = 8416.935631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.078 4.078 4 H 0.075 0.925 5 C -0.145 4.145 6 C 0.032 3.968 7 O -0.168 6.168 8 N -0.585 5.585 9 C 0.600 3.400 10 O -0.567 6.567 11 C -0.023 4.023 12 C -0.141 4.141 13 C -0.146 4.146 14 C -0.067 4.067 15 C -0.154 4.154 16 C -0.098 4.098 17 C -0.161 4.161 18 C 0.062 3.938 19 N -0.309 5.309 20 C -0.383 4.383 21 H 0.102 0.898 22 C 0.062 3.938 23 N -0.858 5.858 24 Si 0.925 3.075 25 H -0.231 1.231 26 H -0.286 1.286 27 H -0.268 1.268 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.040 0.960 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.424 0.576 39 H 0.159 0.841 40 H 0.148 0.852 41 H 0.159 0.841 42 H 0.151 0.849 43 H 0.112 0.888 44 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.959 0.606 1.441 2.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C -0.097 4.097 4 H 0.093 0.907 5 C -0.202 4.202 6 C -0.045 4.045 7 O -0.172 6.172 8 N -0.294 5.294 9 C 0.390 3.610 10 O -0.446 6.446 11 C -0.136 4.136 12 C -0.169 4.169 13 C -0.151 4.151 14 C -0.085 4.085 15 C -0.172 4.172 16 C -0.118 4.118 17 C -0.181 4.181 18 C -0.051 4.051 19 N 0.023 4.977 20 C -0.509 4.509 21 H 0.119 0.881 22 C -0.150 4.150 23 N -0.488 5.488 24 Si 0.750 3.250 25 H -0.154 1.154 26 H -0.213 1.213 27 H -0.193 1.193 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.059 0.941 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.277 0.723 39 H 0.177 0.823 40 H 0.166 0.834 41 H 0.177 0.823 42 H 0.169 0.831 43 H 0.130 0.870 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.785 0.787 1.477 3.249 hybrid contribution 0.235 -0.988 -0.532 1.147 sum -2.549 -0.201 0.945 2.726 Atomic orbital electron populations 1.21782 0.93782 1.02560 1.02432 1.21506 0.97485 0.93399 1.02773 1.21161 0.89647 0.98779 1.00158 0.90662 1.21847 1.02499 0.99855 0.95963 1.23344 0.97119 0.82685 1.01402 1.90400 1.04434 1.27874 1.94537 1.48470 0.97314 1.11047 1.72582 1.17266 0.85413 0.81956 0.76359 1.90708 1.62594 1.36501 1.54845 1.20202 0.89240 0.89327 1.14791 1.20819 0.92315 0.96739 1.07039 1.18400 0.95129 0.92240 1.09325 1.20695 0.90428 1.00172 0.97219 1.20937 0.98460 0.94143 1.03680 1.21193 0.97178 0.94513 0.98872 1.20387 0.91473 0.99902 1.06338 1.18978 0.86971 0.93950 1.05159 1.40234 1.04511 1.04225 1.48766 1.18903 1.45960 0.82143 1.03894 0.88122 1.25968 0.94508 0.95009 0.99558 1.69605 1.40084 1.05553 1.33586 0.86131 0.81074 0.79628 0.78214 1.15438 1.21261 1.19274 0.92683 0.91427 0.91615 0.91902 0.90919 0.94078 0.90101 0.92062 0.92493 0.91726 0.72324 0.82307 0.83411 0.82334 0.83133 0.86987 0.89493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.67 71.98 0.70 -1.67 16 2 C -0.11 -2.28 5.40 30.60 0.17 -2.11 16 3 C -0.08 -1.96 2.63 -10.79 -0.03 -1.99 16 4 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 5 C -0.14 -3.38 8.84 71.98 0.64 -2.74 16 6 C 0.03 1.03 5.61 71.98 0.40 1.43 16 7 O -0.17 -7.01 10.65 -21.50 -0.23 -7.24 16 8 N -0.59 -26.75 6.27 -176.25 -1.11 -27.85 16 9 C 0.60 29.41 7.92 86.51 0.68 30.10 16 10 O -0.57 -29.56 17.26 13.04 0.22 -29.34 16 11 C -0.02 -1.10 6.77 39.91 0.27 -0.83 16 12 C -0.14 -6.08 10.55 22.63 0.24 -5.84 16 13 C -0.15 -6.00 6.16 -21.34 -0.13 -6.13 16 14 C -0.07 -2.11 10.06 22.31 0.22 -1.89 16 15 C -0.15 -4.27 9.97 22.03 0.22 -4.05 16 16 C -0.10 -3.06 10.02 22.32 0.22 -2.83 16 17 C -0.16 -6.45 6.87 22.38 0.15 -6.29 16 18 C 0.06 2.80 4.58 39.06 0.18 2.97 16 19 N -0.31 -15.00 2.41 -331.35 -0.80 -15.80 16 20 C -0.38 -19.20 8.30 84.09 0.70 -18.50 16 21 H 0.10 5.22 6.45 -2.91 -0.02 5.20 16 22 C 0.06 3.07 5.49 84.95 0.47 3.53 16 23 N -0.86 -42.88 13.95 21.67 0.30 -42.57 16 24 Si 0.93 40.86 23.54 68.60 1.61 42.47 16 25 H -0.23 -9.18 6.06 99.48 0.60 -8.58 16 26 H -0.29 -12.41 7.11 99.48 0.71 -11.71 16 27 H -0.27 -12.84 6.25 99.48 0.62 -12.22 16 28 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 0.95 6.56 -2.39 -0.02 0.93 16 31 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.04 1.15 7.82 -2.39 -0.02 1.13 16 34 H 0.08 1.50 6.56 -2.38 -0.02 1.48 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16 36 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.42 19.38 4.41 -92.71 -0.41 18.97 16 39 H 0.16 6.09 8.06 -2.91 -0.02 6.07 16 40 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 41 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 42 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 43 H 0.11 4.61 5.71 -2.91 -0.02 4.60 16 44 H 0.29 13.62 8.31 -92.71 -0.77 12.85 16 Total: -1.00 -62.25 355.52 5.53 -56.72 By element: Atomic # 1 Polarization: 40.03 SS G_CDS: 0.42 Total: 40.45 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: 5.10 Total: -16.84 kcal Atomic # 7 Polarization: -84.63 SS G_CDS: -1.60 Total: -86.23 kcal Atomic # 8 Polarization: -36.57 SS G_CDS: 0.00 Total: -36.58 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 1.61 Total: 42.47 kcal Total: -62.25 5.53 -56.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816975196.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.674 kcal (2) G-P(sol) polarization free energy of solvation -62.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds