Wall clock time and date at job start Tue Mar 31 2020 11:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47181 * 2 1 4 4 H 1.09003 * 109.47040 * 54.32245 * 3 2 1 5 5 C 1.50707 * 109.47204 * 174.31530 * 3 2 1 6 6 H 1.08001 * 119.99273 * 25.66724 * 5 3 2 7 7 C 1.37868 * 120.00279 * 205.66316 * 5 3 2 8 8 N 1.31520 * 119.99873 * 353.27762 * 7 5 3 9 9 Si 1.86797 * 120.00242 * 173.27567 * 7 5 3 10 10 H 1.48498 * 109.46992 * 89.99830 * 9 7 5 11 11 H 1.48503 * 109.46893 * 330.00292 * 9 7 5 12 12 H 1.48502 * 109.47510 * 209.99922 * 9 7 5 13 13 N 1.46492 * 109.47491 * 294.31992 * 3 2 1 14 14 C 1.34772 * 120.00114 * 84.99626 * 13 3 2 15 15 O 1.21288 * 120.00310 * 0.02562 * 14 13 3 16 16 C 1.50702 * 120.00229 * 179.97438 * 14 13 3 17 17 C 1.53001 * 110.86055 * 278.80388 * 16 14 13 18 18 C 1.54739 * 110.97279 * 155.00103 * 16 14 13 19 19 C 1.51685 * 102.55077 * 266.11021 * 18 16 14 20 20 C 1.47654 * 125.86626 * 164.61008 * 19 18 16 21 21 C 1.39607 * 120.14666 * 359.72568 * 20 19 18 22 22 C 1.37955 * 119.84791 * 179.72310 * 21 20 19 23 23 C 1.38360 * 120.14590 * 0.53038 * 22 21 20 24 24 C 1.38356 * 120.30080 * 359.76839 * 23 22 21 25 25 C 1.37948 * 120.15270 * 359.95354 * 24 23 22 26 26 N 1.29085 * 108.26846 * 344.61046 * 19 18 16 27 27 O 1.41386 * 112.87198 * 359.67983 * 26 19 18 28 28 H 1.08999 * 109.46644 * 60.00174 * 1 2 3 29 29 H 1.08997 * 109.47082 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47068 * 299.99979 * 1 2 3 31 31 H 1.09010 * 109.47105 * 240.00149 * 2 1 3 32 32 H 1.09002 * 109.47228 * 120.00550 * 2 1 3 33 33 H 0.96994 * 120.00171 * 354.66854 * 8 7 5 34 34 H 0.97000 * 120.00284 * 265.00105 * 13 3 2 35 35 H 1.08996 * 109.47150 * 59.29893 * 17 16 14 36 36 H 1.09003 * 109.46625 * 179.29917 * 17 16 14 37 37 H 1.09001 * 109.47060 * 299.29273 * 17 16 14 38 38 H 1.09002 * 110.79280 * 24.37836 * 18 16 14 39 39 H 1.08999 * 110.79263 * 147.65122 * 18 16 14 40 40 H 1.08004 * 120.07438 * 359.97438 * 21 20 19 41 41 H 1.08004 * 119.92662 * 180.29606 * 22 21 20 42 42 H 1.07995 * 119.84649 * 179.74230 * 23 22 21 43 43 H 1.08005 * 119.92277 * 179.97438 * 24 23 22 44 44 H 1.08000 * 120.08088 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5961 1.9848 0.8348 5 6 3.5405 1.4448 0.1407 6 1 4.1146 0.5896 -0.1842 7 6 4.1803 2.5385 0.6841 8 7 3.4993 3.6300 0.9572 9 14 6.0142 2.4701 1.0325 10 1 6.7626 2.9376 -0.1618 11 1 6.4065 1.0728 1.3468 12 1 6.3314 3.3455 2.1894 13 7 1.6666 2.0925 -1.2586 14 6 0.4507 2.6589 -1.3896 15 8 -0.3342 2.6309 -0.4654 16 6 0.0667 3.3282 -2.6841 17 6 0.6422 4.7440 -2.7571 18 6 -1.4700 3.3449 -2.8644 19 6 -1.7194 2.0932 -3.6841 20 6 -3.0264 1.4357 -3.8833 21 6 -4.1737 1.9608 -3.2859 22 6 -5.3926 1.3448 -3.4808 23 6 -5.4777 0.2027 -4.2573 24 6 -4.3435 -0.3265 -4.8471 25 6 -3.1193 0.2827 -4.6651 26 7 -0.5928 1.7016 -4.1776 27 8 0.4866 2.5405 -3.8166 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.5647 3.6943 0.7059 34 1 2.2944 2.1153 -1.9977 35 1 1.7286 4.6988 -2.6826 36 1 0.3617 5.2016 -3.7058 37 1 0.2459 5.3400 -1.9350 38 1 -1.9735 3.2824 -1.8996 39 1 -1.7863 4.2357 -3.4070 40 1 -4.1079 2.8496 -2.6759 41 1 -6.2818 1.7527 -3.0232 42 1 -6.4337 -0.2780 -4.4032 43 1 -4.4169 -1.2185 -5.4516 44 1 -2.2348 -0.1311 -5.1264 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857179552.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:52 Heat of formation + Delta-G solvation = -7.089377 kcal Electronic energy + Delta-G solvation = -27002.158614 eV Core-core repulsion = 23306.817043 eV Total energy + Delta-G solvation = -3695.341571 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.76611 -39.23839 -38.19946 -35.24005 -33.94004 -32.41244 -32.22596 -31.30883 -31.07877 -30.21518 -27.14032 -26.73726 -23.82578 -23.59309 -22.85042 -22.37589 -20.34815 -20.08658 -19.22917 -17.94839 -17.03481 -16.51086 -16.06050 -15.53795 -15.34123 -15.03770 -14.69920 -14.13549 -13.98527 -13.81581 -13.70277 -13.54096 -13.32419 -13.15553 -12.90003 -12.70781 -12.51730 -12.26993 -12.08947 -11.98079 -11.52893 -11.41122 -11.20290 -11.05331 -10.83167 -10.75253 -10.68869 -10.37794 -10.19860 -10.17989 -9.82823 -9.21152 -9.15514 -8.77419 -8.67295 -8.51730 -7.78425 -6.56117 -4.36632 0.55711 1.15438 2.16457 3.03025 3.26585 3.35013 3.38181 3.55200 3.61968 3.87402 4.05562 4.31848 4.39720 4.53325 4.70649 4.75198 4.85355 5.03775 5.14346 5.17702 5.29824 5.43082 5.47433 5.53377 5.61958 5.74913 5.76725 5.78521 5.95348 6.01285 6.05350 6.16525 6.20780 6.22680 6.24930 6.26222 6.66251 6.69089 6.81624 6.94240 7.05177 7.28835 7.34163 7.64583 7.87161 8.26201 8.57519 8.74911 9.10502 9.43042 10.80784 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.021877 B = 0.003553 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.589888 B = 7879.193915 C = 8330.352397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.118 4.118 3 C 0.242 3.758 4 H 0.054 0.946 5 C -0.607 4.607 6 H 0.057 0.943 7 C 0.031 3.969 8 N -0.889 5.889 9 Si 1.071 2.929 10 H -0.286 1.286 11 H -0.286 1.286 12 H -0.282 1.282 13 N -0.683 5.683 14 C 0.495 3.505 15 O -0.553 6.553 16 C 0.048 3.952 17 C -0.134 4.134 18 C -0.132 4.132 19 C 0.123 3.877 20 C -0.035 4.035 21 C -0.084 4.084 22 C -0.123 4.123 23 C -0.104 4.104 24 C -0.124 4.124 25 C -0.081 4.081 26 N -0.283 5.283 27 O -0.178 6.178 28 H 0.047 0.953 29 H 0.028 0.972 30 H 0.051 0.949 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.277 0.723 34 H 0.391 0.609 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.120 0.880 39 H 0.106 0.894 40 H 0.131 0.869 41 H 0.129 0.871 42 H 0.125 0.875 43 H 0.128 0.872 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.461 -1.727 -11.018 19.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.156 4.156 3 C 0.142 3.858 4 H 0.072 0.928 5 C -0.645 4.645 6 H 0.075 0.925 7 C -0.178 4.178 8 N -0.522 5.522 9 Si 0.898 3.102 10 H -0.213 1.213 11 H -0.212 1.212 12 H -0.208 1.208 13 N -0.330 5.330 14 C 0.277 3.723 15 O -0.434 6.434 16 C 0.004 3.996 17 C -0.192 4.192 18 C -0.172 4.172 19 C -0.066 4.066 20 C -0.036 4.036 21 C -0.105 4.105 22 C -0.141 4.141 23 C -0.123 4.123 24 C -0.142 4.142 25 C -0.101 4.101 26 N -0.022 5.022 27 O -0.198 6.198 28 H 0.066 0.934 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.225 0.775 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.138 0.862 39 H 0.124 0.876 40 H 0.149 0.851 41 H 0.147 0.853 42 H 0.143 0.857 43 H 0.146 0.854 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.936 -1.618 -10.368 17.445 hybrid contribution -1.239 -0.197 -0.537 1.365 sum -15.175 -1.815 -10.906 18.775 Atomic orbital electron populations 1.21827 0.97162 0.98637 1.02013 1.21819 0.94117 0.99124 1.00568 1.19015 0.95070 0.88661 0.83034 0.92807 1.22155 0.91015 1.05031 1.46326 0.92470 1.26020 1.06709 0.92181 0.92852 1.70719 1.11802 1.27488 1.42223 0.83522 0.73842 0.75770 0.77020 1.21283 1.21186 1.20769 1.47655 1.13318 1.53601 1.18455 1.20368 0.83950 0.79865 0.88075 1.90630 1.51311 1.60665 1.40751 1.23393 0.93833 0.94656 0.87722 1.21758 1.03065 0.91224 1.03173 1.22910 0.95075 0.96359 1.02816 1.24251 0.92819 0.94107 0.95435 1.17831 0.89059 0.96177 1.00542 1.21289 0.91521 0.99784 0.97861 1.21090 0.97472 0.96244 0.99310 1.21333 0.98651 0.95838 0.96509 1.21118 0.92292 1.00315 1.00486 1.21382 0.98480 0.93844 0.96374 1.78360 0.95594 1.11626 1.16616 1.91264 1.30041 1.52432 1.46113 0.93403 0.95264 0.92967 0.93601 0.92219 0.91209 0.77455 0.90237 0.91011 0.89982 0.86171 0.87600 0.85120 0.85323 0.85685 0.85432 0.84998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.53 37.16 0.32 -2.64 16 2 C -0.12 -2.66 5.58 -26.73 -0.15 -2.81 16 3 C 0.24 6.08 1.72 -69.09 -0.12 5.96 16 4 H 0.05 1.54 6.57 -51.93 -0.34 1.20 16 5 C -0.61 -16.24 8.49 -34.44 -0.29 -16.54 16 6 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 7 C 0.03 0.85 5.45 -17.82 -0.10 0.75 16 8 N -0.89 -25.76 13.56 55.43 0.75 -25.00 16 9 Si 1.07 24.04 29.91 -169.99 -5.08 18.96 16 10 H -0.29 -6.20 7.11 56.52 0.40 -5.79 16 11 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 13 N -0.68 -15.60 4.91 -54.93 -0.27 -15.87 16 14 C 0.49 10.55 5.43 -10.99 -0.06 10.49 16 15 O -0.55 -12.92 12.85 5.55 0.07 -12.84 16 16 C 0.05 0.83 1.21 -90.85 -0.11 0.72 16 17 C -0.13 -2.00 8.95 37.16 0.33 -1.67 16 18 C -0.13 -1.91 5.31 -26.48 -0.14 -2.05 16 19 C 0.12 1.86 7.16 -79.42 -0.57 1.29 16 20 C -0.03 -0.45 5.87 -105.03 -0.62 -1.06 16 21 C -0.08 -0.89 9.61 -39.17 -0.38 -1.27 16 22 C -0.12 -1.07 10.03 -39.64 -0.40 -1.47 16 23 C -0.10 -0.86 10.04 -39.49 -0.40 -1.26 16 24 C -0.12 -1.15 10.03 -39.64 -0.40 -1.55 16 25 C -0.08 -0.95 9.69 -39.18 -0.38 -1.33 16 26 N -0.28 -4.90 12.12 35.30 0.43 -4.48 16 27 O -0.18 -3.27 11.60 -11.37 -0.13 -3.40 16 28 H 0.05 1.06 5.63 -51.93 -0.29 0.77 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 1.15 7.89 -51.93 -0.41 0.74 16 31 H 0.05 1.02 8.14 -51.92 -0.42 0.59 16 32 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 33 H 0.28 8.17 6.93 -40.82 -0.28 7.89 16 34 H 0.39 8.80 8.33 -40.82 -0.34 8.46 16 35 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.12 1.80 6.75 -51.93 -0.35 1.45 16 39 H 0.11 1.21 7.91 -51.93 -0.41 0.79 16 40 H 0.13 1.19 7.36 -52.48 -0.39 0.80 16 41 H 0.13 0.80 8.06 -52.48 -0.42 0.37 16 42 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 43 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 44 H 0.13 1.57 7.84 -52.49 -0.41 1.16 16 LS Contribution 365.42 15.07 5.51 5.51 Total: -1.00 -31.50 365.42 -8.42 -39.91 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -6.24 Total: 11.66 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -3.45 Total: -14.43 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: 0.91 Total: -45.35 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -0.06 Total: -16.25 kcal Atomic # 14 Polarization: 24.04 SS G_CDS: -5.08 Total: 18.96 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.50 -8.42 -39.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857179552.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.825 kcal (2) G-P(sol) polarization free energy of solvation -31.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds