Wall clock time and date at job start Tue Mar 31 2020 11:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.08990 * 109.47170 * 54.99895 * 3 2 1 5 5 C 1.50700 * 109.46738 * 175.00110 * 3 2 1 6 6 H 1.08003 * 120.00017 * 120.00403 * 5 3 2 7 7 C 1.37878 * 120.00047 * 299.99605 * 5 3 2 8 8 N 1.31512 * 119.99901 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00144 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47002 * 59.99699 * 9 7 5 11 11 H 1.48490 * 109.47259 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47205 * 300.00376 * 9 7 5 13 13 N 1.46506 * 109.46901 * 294.99627 * 3 2 1 14 14 C 1.34776 * 119.99799 * 85.00473 * 13 3 2 15 15 O 1.21285 * 120.00122 * 359.97438 * 14 13 3 16 16 C 1.50698 * 119.99878 * 179.97438 * 14 13 3 17 17 C 1.52997 * 110.85922 * 87.34374 * 16 14 13 18 18 C 1.54734 * 110.97109 * 211.18679 * 16 14 13 19 19 C 1.51682 * 102.55356 * 93.89194 * 18 16 14 20 20 C 1.47650 * 125.86616 * 195.43689 * 19 18 16 21 21 C 1.39609 * 120.14862 * 359.69124 * 20 19 18 22 22 C 1.37957 * 119.84243 * 179.74546 * 21 20 19 23 23 C 1.38351 * 120.15458 * 0.55509 * 22 21 20 24 24 C 1.38356 * 120.30120 * 359.69792 * 23 22 21 25 25 C 1.37957 * 120.15041 * 0.02562 * 24 23 22 26 26 N 1.29080 * 108.27001 * 15.38937 * 19 18 16 27 27 O 1.41393 * 112.87013 * 0.32285 * 26 19 18 28 28 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 29 29 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 31 31 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 32 32 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 33 33 H 0.97005 * 119.99779 * 180.02562 * 8 7 5 34 34 H 0.97001 * 119.99984 * 264.99882 * 13 3 2 35 35 H 1.09006 * 109.46946 * 60.70479 * 17 16 14 36 36 H 1.09002 * 109.46826 * 180.69459 * 17 16 14 37 37 H 1.08994 * 109.47502 * 300.70144 * 17 16 14 38 38 H 1.09005 * 110.79446 * 212.15566 * 18 16 14 39 39 H 1.09001 * 110.79671 * 335.62181 * 18 16 14 40 40 H 1.07992 * 120.07447 * 0.02997 * 21 20 19 41 41 H 1.08002 * 119.92194 * 180.28070 * 22 21 20 42 42 H 1.07997 * 119.85344 * 179.72411 * 23 22 21 43 43 H 1.07998 * 119.92709 * 180.02562 * 24 23 22 44 44 H 1.07999 * 120.07746 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1432 0.8783 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8811 1.3818 10 1 6.4995 2.2814 1.3820 11 1 6.3977 0.2177 2.6509 12 1 6.5975 0.1471 0.2349 13 7 1.6524 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3671 15 8 -0.3396 2.6320 -0.4345 16 6 0.0367 3.3385 -2.6546 17 6 -0.5780 2.3319 -3.6291 18 6 -0.9326 4.5146 -2.3870 19 6 0.0061 5.7030 -2.3031 20 6 -0.3272 7.0315 -1.7515 21 6 -1.6064 7.2823 -1.2518 22 6 -1.9094 8.5242 -0.7330 23 6 -0.9526 9.5233 -0.7178 24 6 0.3155 9.2831 -1.2163 25 6 0.6338 8.0441 -1.7328 26 7 1.1467 5.3533 -2.7959 27 8 1.1611 4.0152 -3.2524 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8293 -0.0612 2.9499 34 1 2.2720 2.1231 -1.9979 35 1 -1.4711 1.8938 -3.1836 36 1 -0.8461 2.8402 -4.5554 37 1 0.1451 1.5448 -3.8426 38 1 -1.6343 4.6333 -3.2127 39 1 -1.4625 4.3727 -1.4451 40 1 -2.3555 6.5046 -1.2671 41 1 -2.8973 8.7183 -0.3419 42 1 -1.1964 10.4951 -0.3146 43 1 1.0579 10.0673 -1.2010 44 1 1.6239 7.8580 -2.1219 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857179555.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:04 Heat of formation + Delta-G solvation = 1.854256 kcal Electronic energy + Delta-G solvation = -26650.428727 eV Core-core repulsion = 22955.474981 eV Total energy + Delta-G solvation = -3694.953746 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.81114 -39.22928 -38.22989 -35.13750 -33.95882 -32.45832 -32.26449 -31.19590 -30.81794 -30.22005 -27.29072 -26.97628 -23.90400 -23.64582 -22.79980 -22.29672 -20.34889 -19.88378 -19.24029 -17.97316 -16.83902 -16.10638 -16.05544 -15.59842 -15.35863 -15.10078 -14.71241 -14.53338 -14.10264 -13.90231 -13.65794 -13.42550 -13.23593 -13.06158 -12.76905 -12.61712 -12.43375 -12.31088 -11.88460 -11.55674 -11.49120 -11.39825 -11.28580 -11.23258 -10.97663 -10.80891 -10.69907 -10.34109 -10.23071 -10.17401 -9.64867 -9.17874 -9.07526 -9.04180 -8.58701 -8.48253 -7.85912 -6.10985 -4.19962 0.57569 1.18661 2.16917 3.00490 3.16416 3.28286 3.32637 3.35218 3.64532 3.80844 4.01151 4.27059 4.37301 4.45923 4.73602 4.76436 4.88271 4.98157 5.17554 5.19849 5.28256 5.32111 5.38727 5.47422 5.51373 5.65863 5.73372 5.79251 5.89418 5.99280 6.22993 6.24680 6.27591 6.35875 6.41927 6.62127 6.69276 7.00674 7.14628 7.31488 7.34348 7.41285 7.61695 7.73093 7.89595 8.17058 8.62817 8.76140 9.05071 9.46833 10.94384 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013229 B = 0.003825 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.068508 B = 7317.847927 C = 8264.947911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.884 5.884 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.688 5.688 14 C 0.499 3.501 15 O -0.543 6.543 16 C 0.048 3.952 17 C -0.133 4.133 18 C -0.131 4.131 19 C 0.123 3.877 20 C -0.036 4.036 21 C -0.085 4.085 22 C -0.123 4.123 23 C -0.104 4.104 24 C -0.124 4.124 25 C -0.080 4.080 26 N -0.279 5.279 27 O -0.179 6.179 28 H 0.037 0.963 29 H 0.024 0.976 30 H 0.049 0.951 31 H 0.032 0.968 32 H 0.100 0.900 33 H 0.265 0.735 34 H 0.394 0.606 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.107 0.893 39 H 0.121 0.879 40 H 0.131 0.869 41 H 0.129 0.871 42 H 0.125 0.875 43 H 0.128 0.872 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.248 13.250 -9.593 19.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.521 5.521 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.335 5.335 14 C 0.281 3.719 15 O -0.422 6.422 16 C 0.004 3.996 17 C -0.191 4.191 18 C -0.171 4.171 19 C -0.066 4.066 20 C -0.037 4.037 21 C -0.105 4.105 22 C -0.141 4.141 23 C -0.123 4.123 24 C -0.142 4.142 25 C -0.100 4.100 26 N -0.018 5.018 27 O -0.200 6.200 28 H 0.056 0.944 29 H 0.043 0.957 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.119 0.881 33 H 0.075 0.925 34 H 0.228 0.772 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.126 0.874 39 H 0.139 0.861 40 H 0.149 0.851 41 H 0.147 0.853 42 H 0.143 0.857 43 H 0.146 0.854 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.545 13.238 -9.118 19.225 hybrid contribution 0.558 -0.461 0.000 0.724 sum -9.987 12.777 -9.119 18.605 Atomic orbital electron populations 1.21841 0.98404 0.98084 1.01107 1.21938 0.92562 0.99688 1.02440 1.18836 0.94402 0.89174 0.80747 0.93413 1.21209 0.90646 1.38990 1.06399 0.92031 1.24868 0.98656 0.94736 0.95302 1.69883 1.35224 1.37658 1.09346 0.86505 0.84820 0.78379 0.77420 1.20156 1.21121 1.20087 1.46460 1.14093 1.54175 1.18738 1.20143 0.83652 0.80160 0.87955 1.90673 1.51593 1.60721 1.39233 1.23332 0.87382 0.94600 0.94246 1.21753 1.01582 0.98029 0.97766 1.22914 0.99192 0.88489 1.06469 1.24267 0.92237 0.94905 0.95226 1.17822 0.94906 0.89447 1.01555 1.21274 0.95158 0.97495 0.96549 1.21083 0.99927 0.93011 1.00127 1.21336 0.93418 0.99291 0.98232 1.21129 0.96985 0.96926 0.99137 1.21399 0.99200 0.92262 0.97093 1.78409 1.18404 0.95073 1.09948 1.91260 1.46866 1.15393 1.66443 0.94421 0.95733 0.93170 0.94926 0.88138 0.92530 0.77246 0.89932 0.90782 0.90484 0.87441 0.86135 0.85131 0.85325 0.85679 0.85397 0.84914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.51 37.16 0.32 -2.71 16 2 C -0.13 -3.12 5.45 -26.73 -0.15 -3.27 16 3 C 0.27 6.96 2.24 -69.08 -0.15 6.81 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 5 C -0.53 -14.58 8.73 -34.44 -0.30 -14.88 16 6 H 0.06 1.64 7.74 -52.48 -0.41 1.24 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -25.02 11.29 55.43 0.63 -24.40 16 9 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 N -0.69 -15.16 4.95 -54.93 -0.27 -15.43 16 14 C 0.50 10.12 5.38 -10.99 -0.06 10.07 16 15 O -0.54 -12.34 12.98 5.55 0.07 -12.27 16 16 C 0.05 0.77 1.24 -90.86 -0.11 0.65 16 17 C -0.13 -1.65 8.95 37.16 0.33 -1.32 16 18 C -0.13 -1.78 5.32 -26.49 -0.14 -1.92 16 19 C 0.12 1.82 7.16 -79.42 -0.57 1.25 16 20 C -0.04 -0.46 5.87 -105.03 -0.62 -1.08 16 21 C -0.08 -0.88 9.61 -39.17 -0.38 -1.26 16 22 C -0.12 -1.08 10.03 -39.64 -0.40 -1.48 16 23 C -0.10 -0.88 10.04 -39.50 -0.40 -1.28 16 24 C -0.12 -1.18 10.03 -39.64 -0.40 -1.58 16 25 C -0.08 -0.95 9.69 -39.17 -0.38 -1.33 16 26 N -0.28 -4.78 12.12 35.30 0.43 -4.35 16 27 O -0.18 -3.12 11.40 -11.37 -0.13 -3.25 16 28 H 0.04 0.79 5.64 -51.93 -0.29 0.50 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.05 1.18 7.85 -51.93 -0.41 0.77 16 31 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.10 2.72 5.95 -51.93 -0.31 2.41 16 33 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 34 H 0.39 8.18 8.09 -40.82 -0.33 7.85 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.11 1.09 7.91 -51.93 -0.41 0.68 16 39 H 0.12 1.70 6.84 -51.93 -0.36 1.34 16 40 H 0.13 1.14 7.38 -52.49 -0.39 0.76 16 41 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 43 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 44 H 0.13 1.62 7.84 -52.49 -0.41 1.21 16 LS Contribution 363.14 15.07 5.47 5.47 Total: -1.00 -31.81 363.14 -8.54 -40.35 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -6.22 Total: 9.33 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -3.49 Total: -11.57 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: 0.78 Total: -44.18 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.06 Total: -15.52 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.81 -8.54 -40.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857179555.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.205 kcal (2) G-P(sol) polarization free energy of solvation -31.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds