Wall clock time and date at job start Tue Mar 31 2020 11:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50703 * 120.00065 * 2 1 4 4 N 1.46896 * 109.47718 * 124.99580 * 3 2 1 5 5 C 1.46903 * 111.00009 * 288.62212 * 4 3 2 6 6 C 1.50695 * 109.47470 * 160.13204 * 5 4 3 7 7 H 1.08003 * 119.99705 * 1.89047 * 6 5 4 8 8 C 1.37874 * 120.00342 * 181.89838 * 6 5 4 9 9 N 1.31515 * 119.99941 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00087 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47440 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47090 * 119.99856 * 10 8 6 13 13 H 1.48499 * 109.47148 * 239.99838 * 10 8 6 14 14 C 1.46896 * 111.00435 * 164.66572 * 4 3 2 15 15 N 1.46502 * 109.47083 * 278.95869 * 14 4 3 16 16 C 1.47085 * 125.56365 * 89.99597 * 15 14 4 17 17 C 1.54094 * 103.77954 * 179.97438 * 16 15 14 18 18 H 1.08996 * 110.52713 * 241.22881 * 17 16 15 19 19 C 1.50700 * 110.52314 * 118.62709 * 17 16 15 20 20 C 1.38242 * 119.99851 * 101.92908 * 19 17 16 21 21 C 1.38233 * 120.00231 * 179.97438 * 20 19 17 22 22 C 1.38237 * 119.99548 * 0.09593 * 21 20 19 23 23 C 1.38233 * 120.00631 * 359.84146 * 22 21 20 24 24 C 1.38235 * 119.99625 * 0.13472 * 23 22 21 25 25 O 1.45705 * 104.12713 * 359.93228 * 17 16 15 26 26 C 1.34010 * 125.55341 * 269.95717 * 15 14 4 27 27 O 1.21503 * 123.07632 * 0.02562 * 26 15 14 28 28 H 1.08000 * 120.00537 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.00053 * 180.02562 * 1 2 3 30 30 H 1.08000 * 120.00537 * 179.97438 * 2 1 3 31 31 H 1.09004 * 109.47148 * 4.99429 * 3 2 1 32 32 H 1.09004 * 109.46874 * 244.99933 * 3 2 1 33 33 H 1.09002 * 109.46687 * 280.12973 * 5 4 3 34 34 H 1.08998 * 109.47181 * 40.12677 * 5 4 3 35 35 H 0.97002 * 120.00021 * 179.97438 * 9 8 6 36 36 H 1.08991 * 109.47544 * 158.95645 * 14 4 3 37 37 H 1.09004 * 109.46953 * 38.95101 * 14 4 3 38 38 H 1.09000 * 110.56907 * 61.39506 * 16 15 14 39 39 H 1.09004 * 110.56883 * 298.53992 * 16 15 14 40 40 H 1.08003 * 119.99490 * 359.70656 * 20 19 17 41 41 H 1.07992 * 120.00106 * 179.97438 * 21 20 19 42 42 H 1.08009 * 119.99388 * 179.97438 * 22 21 20 43 43 H 1.07991 * 120.00134 * 180.10720 * 23 22 21 44 44 H 1.08000 * 120.00042 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9962 1.3322 1.1345 5 6 2.2745 1.4748 2.4061 6 6 3.1580 1.0196 3.5389 7 1 4.1664 0.6891 3.3380 8 6 2.6789 1.0249 4.8317 9 7 1.4511 1.4277 5.0764 10 14 3.7738 0.4600 6.2358 11 1 5.0997 0.0602 5.6997 12 1 3.9473 1.5708 7.2060 13 1 3.1451 -0.6995 6.9181 14 6 3.9922 2.3995 0.9719 15 7 5.0562 1.9421 0.0747 16 6 5.0688 2.0999 -1.3876 17 6 6.3992 1.4506 -1.8153 18 1 7.0429 2.1832 -2.3023 19 6 6.1459 0.2807 -2.7309 20 6 6.3240 0.4192 -4.0948 21 6 6.0921 -0.6540 -4.9346 22 6 5.6802 -1.8651 -4.4108 23 6 5.5033 -2.0040 -3.0469 24 6 5.7356 -0.9309 -2.2070 25 8 6.9937 1.0001 -0.5637 26 6 6.1771 1.3123 0.4527 27 8 6.4312 1.0490 1.6113 28 1 -0.5401 0.9353 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3585 2.1317 0.0895 32 1 2.6213 1.4026 -0.9314 33 1 2.0031 2.5199 2.5545 34 1 1.3716 0.8647 2.3818 35 1 1.1140 1.4311 5.9859 36 1 4.4186 2.6497 1.9433 37 1 3.5133 3.2818 0.5472 38 1 5.0532 3.1554 -1.6590 39 1 4.2253 1.5756 -1.8367 40 1 6.6402 1.3671 -4.5045 41 1 6.2309 -0.5457 -6.0001 42 1 5.4986 -2.7035 -5.0671 43 1 5.1831 -2.9507 -2.6375 44 1 5.5970 -1.0393 -1.1414 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863268480.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:28 Heat of formation + Delta-G solvation = -1.296972 kcal Electronic energy + Delta-G solvation = -26824.503166 eV Core-core repulsion = 23129.412772 eV Total energy + Delta-G solvation = -3695.090393 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.48982 -39.17982 -37.41193 -36.67924 -34.63693 -33.11529 -32.46083 -31.84639 -31.08326 -28.49961 -27.39960 -26.15217 -23.94825 -23.79690 -22.81094 -21.69663 -21.21975 -20.19526 -19.25581 -17.67475 -17.10435 -16.77322 -16.23782 -16.18067 -15.31213 -15.14468 -14.96588 -14.65175 -14.45687 -14.23223 -13.83152 -13.74369 -13.56294 -13.45479 -13.11772 -12.88437 -12.80331 -12.33946 -12.10664 -11.68996 -11.56841 -11.31139 -11.25257 -11.14264 -10.67650 -10.60965 -10.56168 -10.52322 -10.15967 -9.89577 -9.21634 -9.11908 -9.02828 -8.89024 -8.68588 -8.36981 -7.45451 -5.96252 -3.96308 1.02294 1.21061 2.67937 2.78066 3.17960 3.39704 3.45812 3.47059 3.59593 3.68458 4.20835 4.29500 4.51887 4.53536 4.80155 4.81468 4.90512 4.95845 5.04437 5.23204 5.26631 5.33003 5.39734 5.44643 5.47035 5.59614 5.70036 5.83614 5.85203 5.89524 6.04249 6.21161 6.24020 6.32505 6.33590 6.36563 6.67997 6.76329 7.02012 7.10782 7.15541 7.27463 7.68886 7.90013 8.00950 8.14129 8.47763 8.52573 9.17076 9.69133 11.14138 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.014489 B = 0.004064 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.094043 B = 6888.267011 C = 7700.927907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.123 4.123 3 C 0.079 3.921 4 N -0.545 5.545 5 C 0.200 3.800 6 C -0.504 4.504 7 H 0.072 0.928 8 C 0.056 3.944 9 N -0.902 5.902 10 Si 0.894 3.106 11 H -0.268 1.268 12 H -0.286 1.286 13 H -0.286 1.286 14 C 0.316 3.684 15 N -0.615 5.615 16 C 0.071 3.929 17 C 0.115 3.885 18 H 0.119 0.881 19 C -0.104 4.104 20 C -0.103 4.103 21 C -0.124 4.124 22 C -0.114 4.114 23 C -0.117 4.117 24 C -0.085 4.085 25 O -0.326 6.326 26 C 0.641 3.359 27 O -0.500 6.500 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.108 0.892 31 H 0.031 0.969 32 H 0.063 0.937 33 H -0.007 1.007 34 H 0.040 0.960 35 H 0.259 0.741 36 H 0.113 0.887 37 H 0.051 0.949 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.125 0.875 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.432 0.360 -22.639 23.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.141 4.141 3 C -0.049 4.049 4 N -0.272 5.272 5 C 0.075 3.925 6 C -0.543 4.543 7 H 0.090 0.910 8 C -0.144 4.144 9 N -0.542 5.542 10 Si 0.722 3.278 11 H -0.192 1.192 12 H -0.212 1.212 13 H -0.212 1.212 14 C 0.106 3.894 15 N -0.365 5.365 16 C -0.053 4.053 17 C 0.058 3.942 18 H 0.137 0.863 19 C -0.105 4.105 20 C -0.121 4.121 21 C -0.142 4.142 22 C -0.132 4.132 23 C -0.135 4.135 24 C -0.104 4.104 25 O -0.238 6.238 26 C 0.393 3.607 27 O -0.382 6.382 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.126 0.874 31 H 0.049 0.951 32 H 0.082 0.918 33 H 0.010 0.990 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.131 0.869 37 H 0.069 0.931 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.143 0.857 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.911 -0.293 -21.806 22.595 hybrid contribution -0.180 0.348 0.692 0.795 sum 5.730 0.054 -21.114 21.878 Atomic orbital electron populations 1.23691 0.95933 1.01242 1.03112 1.22793 0.95337 0.98584 0.97408 1.21282 0.94398 0.94643 0.94553 1.61810 1.15514 1.46169 1.03706 1.19738 0.94048 0.95544 0.83160 1.21332 1.00151 1.42410 0.90399 0.90987 1.24944 0.95080 0.95538 0.98879 1.69973 1.15531 1.48326 1.20390 0.86480 0.81255 0.78189 0.81910 1.19225 1.21198 1.21191 1.21712 0.84624 0.89591 0.93432 1.48379 1.20713 1.61059 1.06340 1.22880 0.97621 1.01940 0.82844 1.22473 0.94052 0.94127 0.83506 0.86333 1.19731 1.02075 0.94933 0.93725 1.20884 0.99895 0.99185 0.92150 1.21081 1.00332 0.93132 0.99671 1.21231 0.98931 0.97643 0.95355 1.21199 0.99836 0.98970 0.93529 1.21089 0.96407 0.92244 1.00614 1.87433 1.44271 1.75870 1.16191 1.18566 0.79577 0.77633 0.84898 1.91115 1.76122 1.57042 1.13900 0.89102 0.88890 0.87442 0.95083 0.91841 0.98955 0.94196 0.93135 0.86925 0.93113 0.89161 0.89191 0.85684 0.85839 0.85989 0.85697 0.85619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.12 14.32 29.02 0.42 -2.71 16 2 C -0.12 -2.07 8.72 -36.02 -0.31 -2.38 16 3 C 0.08 1.33 5.26 -4.98 -0.03 1.30 16 4 N -0.55 -11.27 4.47 -241.43 -1.08 -12.35 16 5 C 0.20 5.06 4.54 -4.98 -0.02 5.04 16 6 C -0.50 -14.50 8.53 -34.44 -0.29 -14.79 16 7 H 0.07 2.19 7.81 -52.48 -0.41 1.78 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 9 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 10 Si 0.89 22.86 29.54 -169.99 -5.02 17.84 16 11 H -0.27 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 14 C 0.32 5.80 5.58 -63.32 -0.35 5.45 16 15 N -0.62 -9.94 3.15 -182.28 -0.57 -10.51 16 16 C 0.07 0.78 6.90 -3.15 -0.02 0.76 16 17 C 0.11 1.25 4.06 -27.31 -0.11 1.14 16 18 H 0.12 0.90 8.06 -51.93 -0.42 0.48 16 19 C -0.10 -1.11 4.85 -104.62 -0.51 -1.62 16 20 C -0.10 -0.86 9.69 -39.58 -0.38 -1.24 16 21 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 22 C -0.11 -0.99 10.05 -39.58 -0.40 -1.39 16 23 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 24 C -0.09 -1.05 9.37 -39.58 -0.37 -1.42 16 25 O -0.33 -5.22 10.09 -38.58 -0.39 -5.61 16 26 C 0.64 12.22 8.85 53.71 0.48 12.70 16 27 O -0.50 -12.16 17.54 -19.10 -0.34 -12.49 16 28 H 0.09 1.35 7.84 -52.49 -0.41 0.94 16 29 H 0.09 1.30 8.06 -52.48 -0.42 0.88 16 30 H 0.11 1.86 8.06 -52.49 -0.42 1.43 16 31 H 0.03 0.52 7.71 -51.93 -0.40 0.12 16 32 H 0.06 0.91 5.63 -51.93 -0.29 0.62 16 33 H -0.01 -0.19 8.00 -51.93 -0.42 -0.61 16 34 H 0.04 1.09 7.10 -51.93 -0.37 0.72 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 36 H 0.11 2.44 7.04 -51.93 -0.37 2.07 16 37 H 0.05 0.78 7.92 -51.93 -0.41 0.37 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 0.96 5.93 -51.93 -0.31 0.66 16 40 H 0.13 0.71 8.06 -52.48 -0.42 0.28 16 41 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 42 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 43 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 44 H 0.13 1.85 7.72 -52.49 -0.40 1.45 16 LS Contribution 371.21 15.07 5.59 5.59 Total: -1.00 -34.54 371.21 -10.17 -44.71 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -6.30 Total: -0.28 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -2.80 Total: -0.65 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: -0.92 Total: -49.11 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.72 Total: -18.10 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.54 -10.17 -44.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863268480.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.415 kcal (2) G-P(sol) polarization free energy of solvation -34.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds