Wall clock time and date at job start Tue Mar 31 2020 11:26:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.30993 * 1
3 3 C 1.50703 * 120.00065 * 2 1
4 4 N 1.46896 * 109.47718 * 124.99580 * 3 2 1
5 5 C 1.46903 * 111.00009 * 288.62212 * 4 3 2
6 6 C 1.50695 * 109.47470 * 160.13204 * 5 4 3
7 7 H 1.08003 * 119.99705 * 1.89047 * 6 5 4
8 8 C 1.37874 * 120.00342 * 181.89838 * 6 5 4
9 9 N 1.31515 * 119.99941 * 359.97438 * 8 6 5
10 10 Si 1.86795 * 120.00087 * 179.97438 * 8 6 5
11 11 H 1.48497 * 109.47440 * 0.02562 * 10 8 6
12 12 H 1.48503 * 109.47090 * 119.99856 * 10 8 6
13 13 H 1.48499 * 109.47148 * 239.99838 * 10 8 6
14 14 C 1.46896 * 111.00435 * 164.66572 * 4 3 2
15 15 N 1.46502 * 109.47083 * 278.95869 * 14 4 3
16 16 C 1.47085 * 125.56365 * 89.99597 * 15 14 4
17 17 C 1.54094 * 103.77954 * 179.97438 * 16 15 14
18 18 H 1.08996 * 110.52713 * 241.22881 * 17 16 15
19 19 C 1.50700 * 110.52314 * 118.62709 * 17 16 15
20 20 C 1.38242 * 119.99851 * 101.92908 * 19 17 16
21 21 C 1.38233 * 120.00231 * 179.97438 * 20 19 17
22 22 C 1.38237 * 119.99548 * 0.09593 * 21 20 19
23 23 C 1.38233 * 120.00631 * 359.84146 * 22 21 20
24 24 C 1.38235 * 119.99625 * 0.13472 * 23 22 21
25 25 O 1.45705 * 104.12713 * 359.93228 * 17 16 15
26 26 C 1.34010 * 125.55341 * 269.95717 * 15 14 4
27 27 O 1.21503 * 123.07632 * 0.02562 * 26 15 14
28 28 H 1.08000 * 120.00537 * 0.02562 * 1 2 3
29 29 H 1.08003 * 120.00053 * 180.02562 * 1 2 3
30 30 H 1.08000 * 120.00537 * 179.97438 * 2 1 3
31 31 H 1.09004 * 109.47148 * 4.99429 * 3 2 1
32 32 H 1.09004 * 109.46874 * 244.99933 * 3 2 1
33 33 H 1.09002 * 109.46687 * 280.12973 * 5 4 3
34 34 H 1.08998 * 109.47181 * 40.12677 * 5 4 3
35 35 H 0.97002 * 120.00021 * 179.97438 * 9 8 6
36 36 H 1.08991 * 109.47544 * 158.95645 * 14 4 3
37 37 H 1.09004 * 109.46953 * 38.95101 * 14 4 3
38 38 H 1.09000 * 110.56907 * 61.39506 * 16 15 14
39 39 H 1.09004 * 110.56883 * 298.53992 * 16 15 14
40 40 H 1.08003 * 119.99490 * 359.70656 * 20 19 17
41 41 H 1.07992 * 120.00106 * 179.97438 * 21 20 19
42 42 H 1.08009 * 119.99388 * 179.97438 * 22 21 20
43 43 H 1.07991 * 120.00134 * 180.10720 * 23 22 21
44 44 H 1.08000 * 120.00042 * 179.97438 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3099 0.0000 0.0000
3 6 2.0635 1.3051 0.0000
4 7 2.9962 1.3322 1.1345
5 6 2.2745 1.4748 2.4061
6 6 3.1580 1.0196 3.5389
7 1 4.1664 0.6891 3.3380
8 6 2.6789 1.0249 4.8317
9 7 1.4511 1.4277 5.0764
10 14 3.7738 0.4600 6.2358
11 1 5.0997 0.0602 5.6997
12 1 3.9473 1.5708 7.2060
13 1 3.1451 -0.6995 6.9181
14 6 3.9922 2.3995 0.9719
15 7 5.0562 1.9421 0.0747
16 6 5.0688 2.0999 -1.3876
17 6 6.3992 1.4506 -1.8153
18 1 7.0429 2.1832 -2.3023
19 6 6.1459 0.2807 -2.7309
20 6 6.3240 0.4192 -4.0948
21 6 6.0921 -0.6540 -4.9346
22 6 5.6802 -1.8651 -4.4108
23 6 5.5033 -2.0040 -3.0469
24 6 5.7356 -0.9309 -2.2070
25 8 6.9937 1.0001 -0.5637
26 6 6.1771 1.3123 0.4527
27 8 6.4312 1.0490 1.6113
28 1 -0.5401 0.9353 -0.0004
29 1 -0.5400 -0.9353 0.0004
30 1 1.8500 -0.9353 0.0004
31 1 1.3585 2.1317 0.0895
32 1 2.6213 1.4026 -0.9314
33 1 2.0031 2.5199 2.5545
34 1 1.3716 0.8647 2.3818
35 1 1.1140 1.4311 5.9859
36 1 4.4186 2.6497 1.9433
37 1 3.5133 3.2818 0.5472
38 1 5.0532 3.1554 -1.6590
39 1 4.2253 1.5756 -1.8367
40 1 6.6402 1.3671 -4.5045
41 1 6.2309 -0.5457 -6.0001
42 1 5.4986 -2.7035 -5.0671
43 1 5.1831 -2.9507 -2.6375
44 1 5.5970 -1.0393 -1.1414
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000863268480.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:26:27
Heat of formation + Delta-G solvation = -23.544145 kcal
Electronic energy + Delta-G solvation = -26825.467876 eV
Core-core repulsion = 23129.412772 eV
Total energy + Delta-G solvation = -3696.055103 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 316.157 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-42.70092 -40.01594 -38.93202 -38.16384 -35.96448 -34.99953 -33.77003 -33.15317
-31.79528 -29.62523 -29.25067 -27.47180 -25.66082 -24.91761 -23.54349 -23.10382
-22.44342 -21.55386 -20.61249 -18.69727 -18.57620 -18.26017 -17.89910 -17.20939
-16.81465 -16.33599 -16.15649 -16.01322 -15.97170 -15.69358 -14.97096 -14.87316
-14.73449 -14.36326 -14.29084 -14.14689 -14.05629 -13.81250 -13.40153 -13.24931
-12.94014 -12.82736 -12.62092 -12.58237 -12.41995 -12.09662 -11.98201 -11.91078
-11.69390 -11.62021 -11.34626 -10.62761 -10.21239 -10.04559 -9.83833 -9.74560
-9.11813 -8.21116 -6.27557 0.27919 0.48535 1.33407 1.34642 1.35702
1.49184 1.52166 1.75282 2.39813 2.48694 2.85914 3.10604 3.30197
3.38439 3.43223 3.67678 3.91000 4.08861 4.12706 4.14448 4.22252
4.28411 4.31471 4.46619 4.54979 4.57994 4.62510 4.71966 4.75568
4.82518 5.01519 5.02855 5.09505 5.13842 5.23056 5.38731 5.52911
5.59617 5.61908 5.69457 5.73969 5.85511 6.07120 6.09492 6.27325
6.37409 6.60569 6.87222 7.05925 7.41456 8.88439
Molecular weight = 316.16amu
Principal moments of inertia in cm(-1)
A = 0.014489 B = 0.004064 C = 0.003635
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1932.094043 B = 6888.267011 C = 7700.927907
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.187 4.187
2 C -0.149 4.149
3 C 0.084 3.916
4 N -0.563 5.563
5 C 0.221 3.779
6 C -0.517 4.517
7 H 0.045 0.955
8 C 0.013 3.987
9 N -0.926 5.926
10 Si 0.951 3.049
11 H -0.284 1.284
12 H -0.272 1.272
13 H -0.274 1.274
14 C 0.321 3.679
15 N -0.609 5.609
16 C 0.070 3.930
17 C 0.112 3.888
18 H 0.164 0.836
19 C -0.116 4.116
20 C -0.093 4.093
21 C -0.120 4.120
22 C -0.114 4.114
23 C -0.134 4.134
24 C -0.116 4.116
25 O -0.338 6.338
26 C 0.639 3.361
27 O -0.571 6.571
28 H 0.101 0.899
29 H 0.107 0.893
30 H 0.095 0.905
31 H 0.039 0.961
32 H 0.092 0.908
33 H -0.022 1.022
34 H 0.019 0.981
35 H 0.264 0.736
36 H 0.070 0.930
37 H 0.092 0.908
38 H 0.137 0.863
39 H 0.096 0.904
40 H 0.163 0.837
41 H 0.157 0.843
42 H 0.145 0.855
43 H 0.123 0.877
44 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.424 1.553 -26.311 26.909
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.225 4.225
2 C -0.167 4.167
3 C -0.043 4.043
4 N -0.290 5.290
5 C 0.095 3.905
6 C -0.556 4.556
7 H 0.063 0.937
8 C -0.185 4.185
9 N -0.567 5.567
10 Si 0.777 3.223
11 H -0.209 1.209
12 H -0.197 1.197
13 H -0.199 1.199
14 C 0.110 3.890
15 N -0.357 5.357
16 C -0.051 4.051
17 C 0.057 3.943
18 H 0.182 0.818
19 C -0.116 4.116
20 C -0.111 4.111
21 C -0.138 4.138
22 C -0.132 4.132
23 C -0.152 4.152
24 C -0.134 4.134
25 O -0.249 6.249
26 C 0.393 3.607
27 O -0.458 6.458
28 H 0.119 0.881
29 H 0.125 0.875
30 H 0.113 0.887
31 H 0.057 0.943
32 H 0.110 0.890
33 H -0.005 1.005
34 H 0.037 0.963
35 H 0.073 0.927
36 H 0.088 0.912
37 H 0.110 0.890
38 H 0.155 0.845
39 H 0.114 0.886
40 H 0.181 0.819
41 H 0.175 0.825
42 H 0.163 0.837
43 H 0.141 0.859
44 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges 5.895 0.912 -25.554 26.241
hybrid contribution -0.178 -0.073 1.638 1.649
sum 5.717 0.839 -23.916 24.604
Atomic orbital electron populations
1.23904 0.95470 1.02424 1.00691 1.22803 0.96023 0.98262 0.99653
1.21337 0.94173 0.94846 0.93938 1.61593 1.16387 1.47755 1.03217
1.19245 0.92836 0.93677 0.84694 1.21475 0.99451 1.42478 0.92170
0.93696 1.25609 0.96292 0.95654 1.00947 1.70033 1.16510 1.48980
1.21155 0.85614 0.78828 0.78439 0.79444 1.20916 1.19715 1.19922
1.21513 0.84322 0.90323 0.92795 1.48276 1.19024 1.59724 1.08722
1.23303 0.97998 1.04901 0.78930 1.23042 0.94589 0.95137 0.81554
0.81849 1.19802 1.02832 0.94016 0.94977 1.21267 0.98230 1.00897
0.90686 1.21541 0.98541 0.92333 1.01366 1.21546 0.98021 0.99124
0.94479 1.21298 1.00659 0.98582 0.94665 1.20927 0.99229 0.94370
0.98879 1.87394 1.44139 1.75834 1.17497 1.18744 0.80264 0.77073
0.84601 1.91046 1.77820 1.59813 1.17111 0.88108 0.87485 0.88725
0.94262 0.88982 1.00457 0.96325 0.92668 0.91190 0.89012 0.84529
0.88556 0.81948 0.82517 0.83713 0.85885 0.89775
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -5.59 14.32 67.79 0.97 -4.62 16
2 C -0.15 -5.01 8.72 25.66 0.22 -4.79 16
3 C 0.08 2.76 5.26 85.56 0.45 3.21 16
4 N -0.56 -23.87 4.47 -917.76 -4.10 -27.98 16
5 C 0.22 11.67 4.54 85.55 0.39 12.06 16
6 C -0.52 -31.20 8.53 25.60 0.22 -30.99 16
7 H 0.04 2.92 7.81 -2.91 -0.02 2.90 16
8 C 0.01 0.80 5.46 84.65 0.46 1.26 16
9 N -0.93 -56.34 13.29 21.45 0.28 -56.06 16
10 Si 0.95 48.44 29.54 68.60 2.03 50.46 16
11 H -0.28 -15.10 7.11 99.48 0.71 -14.39 16
12 H -0.27 -13.17 7.11 99.48 0.71 -12.47 16
13 H -0.27 -13.35 7.11 99.48 0.71 -12.65 16
14 C 0.32 11.94 5.58 170.81 0.95 12.90 16
15 N -0.61 -19.64 3.15 -962.15 -3.03 -22.67 16
16 C 0.07 1.34 6.90 86.64 0.60 1.94 16
17 C 0.11 2.15 4.06 30.22 0.12 2.27 16
18 H 0.16 1.68 8.06 -2.39 -0.02 1.66 16
19 C -0.12 -2.23 4.85 -19.86 -0.10 -2.33 16
20 C -0.09 -1.14 9.69 22.27 0.22 -0.93 16
21 C -0.12 -1.40 10.05 22.27 0.22 -1.18 16
22 C -0.11 -1.70 10.05 22.27 0.22 -1.48 16
23 C -0.13 -2.81 10.05 22.27 0.22 -2.58 16
24 C -0.12 -2.92 9.37 22.27 0.21 -2.72 16
25 O -0.34 -10.98 10.09 -50.06 -0.51 -11.48 16
26 C 0.64 25.56 8.85 129.91 1.15 26.71 16
27 O -0.57 -30.02 17.54 19.66 0.34 -29.68 16
28 H 0.10 2.81 7.84 -2.91 -0.02 2.79 16
29 H 0.11 2.85 8.06 -2.91 -0.02 2.83 16
30 H 0.09 3.39 8.06 -2.91 -0.02 3.37 16
31 H 0.04 1.24 7.71 -2.39 -0.02 1.22 16
32 H 0.09 2.45 5.63 -2.38 -0.01 2.44 16
33 H -0.02 -1.22 8.00 -2.39 -0.02 -1.24 16
34 H 0.02 1.05 7.10 -2.39 -0.02 1.04 16
35 H 0.26 15.13 8.31 -92.71 -0.77 14.35 16
36 H 0.07 3.22 7.04 -2.39 -0.02 3.20 16
37 H 0.09 2.67 7.92 -2.38 -0.02 2.65 16
38 H 0.14 1.43 8.14 -2.39 -0.02 1.41 16
39 H 0.10 1.76 5.93 -2.38 -0.01 1.75 16
40 H 0.16 0.78 8.06 -2.91 -0.02 0.76 16
41 H 0.16 0.83 8.06 -2.91 -0.02 0.80 16
42 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16
43 H 0.12 2.44 8.06 -2.92 -0.02 2.41 16
44 H 0.08 2.77 7.72 -2.91 -0.02 2.75 16
Total: -1.00 -82.23 371.21 2.54 -79.69
By element:
Atomic # 1 Polarization: 8.00 SS G_CDS: 0.99 Total: 8.99 kcal
Atomic # 6 Polarization: 2.19 SS G_CDS: 6.54 Total: 8.73 kcal
Atomic # 7 Polarization: -99.86 SS G_CDS: -6.85 Total: -106.71 kcal
Atomic # 8 Polarization: -41.00 SS G_CDS: -0.16 Total: -41.16 kcal
Atomic # 14 Polarization: 48.44 SS G_CDS: 2.03 Total: 50.46 kcal
Total: -82.23 2.54 -79.69 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000863268480.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 56.145 kcal
(2) G-P(sol) polarization free energy of solvation -82.229 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.084 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.540 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.689 kcal
(6) G-S(sol) free energy of system = (1) + (5) -23.544 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds