Wall clock time and date at job start Tue Mar 31 2020 11:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50703 * 120.00065 * 2 1 4 4 N 1.46896 * 109.47718 * 124.99580 * 3 2 1 5 5 C 1.46903 * 111.00009 * 288.62212 * 4 3 2 6 6 C 1.50695 * 109.47470 * 160.13204 * 5 4 3 7 7 H 1.08003 * 119.99705 * 1.89047 * 6 5 4 8 8 C 1.37874 * 120.00342 * 181.89838 * 6 5 4 9 9 N 1.31515 * 119.99941 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00087 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47440 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47090 * 119.99856 * 10 8 6 13 13 H 1.48499 * 109.47148 * 239.99838 * 10 8 6 14 14 C 1.46896 * 111.00435 * 164.66572 * 4 3 2 15 15 N 1.46502 * 109.47083 * 278.95869 * 14 4 3 16 16 C 1.47085 * 125.56365 * 89.99597 * 15 14 4 17 17 C 1.54094 * 103.77954 * 179.97438 * 16 15 14 18 18 H 1.08996 * 110.52713 * 241.22881 * 17 16 15 19 19 C 1.50700 * 110.52314 * 118.62709 * 17 16 15 20 20 C 1.38242 * 119.99851 * 101.92908 * 19 17 16 21 21 C 1.38233 * 120.00231 * 179.97438 * 20 19 17 22 22 C 1.38237 * 119.99548 * 0.09593 * 21 20 19 23 23 C 1.38233 * 120.00631 * 359.84146 * 22 21 20 24 24 C 1.38235 * 119.99625 * 0.13472 * 23 22 21 25 25 O 1.45705 * 104.12713 * 359.93228 * 17 16 15 26 26 C 1.34010 * 125.55341 * 269.95717 * 15 14 4 27 27 O 1.21503 * 123.07632 * 0.02562 * 26 15 14 28 28 H 1.08000 * 120.00537 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.00053 * 180.02562 * 1 2 3 30 30 H 1.08000 * 120.00537 * 179.97438 * 2 1 3 31 31 H 1.09004 * 109.47148 * 4.99429 * 3 2 1 32 32 H 1.09004 * 109.46874 * 244.99933 * 3 2 1 33 33 H 1.09002 * 109.46687 * 280.12973 * 5 4 3 34 34 H 1.08998 * 109.47181 * 40.12677 * 5 4 3 35 35 H 0.97002 * 120.00021 * 179.97438 * 9 8 6 36 36 H 1.08991 * 109.47544 * 158.95645 * 14 4 3 37 37 H 1.09004 * 109.46953 * 38.95101 * 14 4 3 38 38 H 1.09000 * 110.56907 * 61.39506 * 16 15 14 39 39 H 1.09004 * 110.56883 * 298.53992 * 16 15 14 40 40 H 1.08003 * 119.99490 * 359.70656 * 20 19 17 41 41 H 1.07992 * 120.00106 * 179.97438 * 21 20 19 42 42 H 1.08009 * 119.99388 * 179.97438 * 22 21 20 43 43 H 1.07991 * 120.00134 * 180.10720 * 23 22 21 44 44 H 1.08000 * 120.00042 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9962 1.3322 1.1345 5 6 2.2745 1.4748 2.4061 6 6 3.1580 1.0196 3.5389 7 1 4.1664 0.6891 3.3380 8 6 2.6789 1.0249 4.8317 9 7 1.4511 1.4277 5.0764 10 14 3.7738 0.4600 6.2358 11 1 5.0997 0.0602 5.6997 12 1 3.9473 1.5708 7.2060 13 1 3.1451 -0.6995 6.9181 14 6 3.9922 2.3995 0.9719 15 7 5.0562 1.9421 0.0747 16 6 5.0688 2.0999 -1.3876 17 6 6.3992 1.4506 -1.8153 18 1 7.0429 2.1832 -2.3023 19 6 6.1459 0.2807 -2.7309 20 6 6.3240 0.4192 -4.0948 21 6 6.0921 -0.6540 -4.9346 22 6 5.6802 -1.8651 -4.4108 23 6 5.5033 -2.0040 -3.0469 24 6 5.7356 -0.9309 -2.2070 25 8 6.9937 1.0001 -0.5637 26 6 6.1771 1.3123 0.4527 27 8 6.4312 1.0490 1.6113 28 1 -0.5401 0.9353 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3585 2.1317 0.0895 32 1 2.6213 1.4026 -0.9314 33 1 2.0031 2.5199 2.5545 34 1 1.3716 0.8647 2.3818 35 1 1.1140 1.4311 5.9859 36 1 4.4186 2.6497 1.9433 37 1 3.5133 3.2818 0.5472 38 1 5.0532 3.1554 -1.6590 39 1 4.2253 1.5756 -1.8367 40 1 6.6402 1.3671 -4.5045 41 1 6.2309 -0.5457 -6.0001 42 1 5.4986 -2.7035 -5.0671 43 1 5.1831 -2.9507 -2.6375 44 1 5.5970 -1.0393 -1.1414 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000863268480.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:27 Heat of formation + Delta-G solvation = -23.544145 kcal Electronic energy + Delta-G solvation = -26825.467876 eV Core-core repulsion = 23129.412772 eV Total energy + Delta-G solvation = -3696.055103 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.70092 -40.01594 -38.93202 -38.16384 -35.96448 -34.99953 -33.77003 -33.15317 -31.79528 -29.62523 -29.25067 -27.47180 -25.66082 -24.91761 -23.54349 -23.10382 -22.44342 -21.55386 -20.61249 -18.69727 -18.57620 -18.26017 -17.89910 -17.20939 -16.81465 -16.33599 -16.15649 -16.01322 -15.97170 -15.69358 -14.97096 -14.87316 -14.73449 -14.36326 -14.29084 -14.14689 -14.05629 -13.81250 -13.40153 -13.24931 -12.94014 -12.82736 -12.62092 -12.58237 -12.41995 -12.09662 -11.98201 -11.91078 -11.69390 -11.62021 -11.34626 -10.62761 -10.21239 -10.04559 -9.83833 -9.74560 -9.11813 -8.21116 -6.27557 0.27919 0.48535 1.33407 1.34642 1.35702 1.49184 1.52166 1.75282 2.39813 2.48694 2.85914 3.10604 3.30197 3.38439 3.43223 3.67678 3.91000 4.08861 4.12706 4.14448 4.22252 4.28411 4.31471 4.46619 4.54979 4.57994 4.62510 4.71966 4.75568 4.82518 5.01519 5.02855 5.09505 5.13842 5.23056 5.38731 5.52911 5.59617 5.61908 5.69457 5.73969 5.85511 6.07120 6.09492 6.27325 6.37409 6.60569 6.87222 7.05925 7.41456 8.88439 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.014489 B = 0.004064 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.094043 B = 6888.267011 C = 7700.927907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.149 4.149 3 C 0.084 3.916 4 N -0.563 5.563 5 C 0.221 3.779 6 C -0.517 4.517 7 H 0.045 0.955 8 C 0.013 3.987 9 N -0.926 5.926 10 Si 0.951 3.049 11 H -0.284 1.284 12 H -0.272 1.272 13 H -0.274 1.274 14 C 0.321 3.679 15 N -0.609 5.609 16 C 0.070 3.930 17 C 0.112 3.888 18 H 0.164 0.836 19 C -0.116 4.116 20 C -0.093 4.093 21 C -0.120 4.120 22 C -0.114 4.114 23 C -0.134 4.134 24 C -0.116 4.116 25 O -0.338 6.338 26 C 0.639 3.361 27 O -0.571 6.571 28 H 0.101 0.899 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.039 0.961 32 H 0.092 0.908 33 H -0.022 1.022 34 H 0.019 0.981 35 H 0.264 0.736 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.137 0.863 39 H 0.096 0.904 40 H 0.163 0.837 41 H 0.157 0.843 42 H 0.145 0.855 43 H 0.123 0.877 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.424 1.553 -26.311 26.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.167 4.167 3 C -0.043 4.043 4 N -0.290 5.290 5 C 0.095 3.905 6 C -0.556 4.556 7 H 0.063 0.937 8 C -0.185 4.185 9 N -0.567 5.567 10 Si 0.777 3.223 11 H -0.209 1.209 12 H -0.197 1.197 13 H -0.199 1.199 14 C 0.110 3.890 15 N -0.357 5.357 16 C -0.051 4.051 17 C 0.057 3.943 18 H 0.182 0.818 19 C -0.116 4.116 20 C -0.111 4.111 21 C -0.138 4.138 22 C -0.132 4.132 23 C -0.152 4.152 24 C -0.134 4.134 25 O -0.249 6.249 26 C 0.393 3.607 27 O -0.458 6.458 28 H 0.119 0.881 29 H 0.125 0.875 30 H 0.113 0.887 31 H 0.057 0.943 32 H 0.110 0.890 33 H -0.005 1.005 34 H 0.037 0.963 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.110 0.890 38 H 0.155 0.845 39 H 0.114 0.886 40 H 0.181 0.819 41 H 0.175 0.825 42 H 0.163 0.837 43 H 0.141 0.859 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.895 0.912 -25.554 26.241 hybrid contribution -0.178 -0.073 1.638 1.649 sum 5.717 0.839 -23.916 24.604 Atomic orbital electron populations 1.23904 0.95470 1.02424 1.00691 1.22803 0.96023 0.98262 0.99653 1.21337 0.94173 0.94846 0.93938 1.61593 1.16387 1.47755 1.03217 1.19245 0.92836 0.93677 0.84694 1.21475 0.99451 1.42478 0.92170 0.93696 1.25609 0.96292 0.95654 1.00947 1.70033 1.16510 1.48980 1.21155 0.85614 0.78828 0.78439 0.79444 1.20916 1.19715 1.19922 1.21513 0.84322 0.90323 0.92795 1.48276 1.19024 1.59724 1.08722 1.23303 0.97998 1.04901 0.78930 1.23042 0.94589 0.95137 0.81554 0.81849 1.19802 1.02832 0.94016 0.94977 1.21267 0.98230 1.00897 0.90686 1.21541 0.98541 0.92333 1.01366 1.21546 0.98021 0.99124 0.94479 1.21298 1.00659 0.98582 0.94665 1.20927 0.99229 0.94370 0.98879 1.87394 1.44139 1.75834 1.17497 1.18744 0.80264 0.77073 0.84601 1.91046 1.77820 1.59813 1.17111 0.88108 0.87485 0.88725 0.94262 0.88982 1.00457 0.96325 0.92668 0.91190 0.89012 0.84529 0.88556 0.81948 0.82517 0.83713 0.85885 0.89775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.59 14.32 67.79 0.97 -4.62 16 2 C -0.15 -5.01 8.72 25.66 0.22 -4.79 16 3 C 0.08 2.76 5.26 85.56 0.45 3.21 16 4 N -0.56 -23.87 4.47 -917.76 -4.10 -27.98 16 5 C 0.22 11.67 4.54 85.55 0.39 12.06 16 6 C -0.52 -31.20 8.53 25.60 0.22 -30.99 16 7 H 0.04 2.92 7.81 -2.91 -0.02 2.90 16 8 C 0.01 0.80 5.46 84.65 0.46 1.26 16 9 N -0.93 -56.34 13.29 21.45 0.28 -56.06 16 10 Si 0.95 48.44 29.54 68.60 2.03 50.46 16 11 H -0.28 -15.10 7.11 99.48 0.71 -14.39 16 12 H -0.27 -13.17 7.11 99.48 0.71 -12.47 16 13 H -0.27 -13.35 7.11 99.48 0.71 -12.65 16 14 C 0.32 11.94 5.58 170.81 0.95 12.90 16 15 N -0.61 -19.64 3.15 -962.15 -3.03 -22.67 16 16 C 0.07 1.34 6.90 86.64 0.60 1.94 16 17 C 0.11 2.15 4.06 30.22 0.12 2.27 16 18 H 0.16 1.68 8.06 -2.39 -0.02 1.66 16 19 C -0.12 -2.23 4.85 -19.86 -0.10 -2.33 16 20 C -0.09 -1.14 9.69 22.27 0.22 -0.93 16 21 C -0.12 -1.40 10.05 22.27 0.22 -1.18 16 22 C -0.11 -1.70 10.05 22.27 0.22 -1.48 16 23 C -0.13 -2.81 10.05 22.27 0.22 -2.58 16 24 C -0.12 -2.92 9.37 22.27 0.21 -2.72 16 25 O -0.34 -10.98 10.09 -50.06 -0.51 -11.48 16 26 C 0.64 25.56 8.85 129.91 1.15 26.71 16 27 O -0.57 -30.02 17.54 19.66 0.34 -29.68 16 28 H 0.10 2.81 7.84 -2.91 -0.02 2.79 16 29 H 0.11 2.85 8.06 -2.91 -0.02 2.83 16 30 H 0.09 3.39 8.06 -2.91 -0.02 3.37 16 31 H 0.04 1.24 7.71 -2.39 -0.02 1.22 16 32 H 0.09 2.45 5.63 -2.38 -0.01 2.44 16 33 H -0.02 -1.22 8.00 -2.39 -0.02 -1.24 16 34 H 0.02 1.05 7.10 -2.39 -0.02 1.04 16 35 H 0.26 15.13 8.31 -92.71 -0.77 14.35 16 36 H 0.07 3.22 7.04 -2.39 -0.02 3.20 16 37 H 0.09 2.67 7.92 -2.38 -0.02 2.65 16 38 H 0.14 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.10 1.76 5.93 -2.38 -0.01 1.75 16 40 H 0.16 0.78 8.06 -2.91 -0.02 0.76 16 41 H 0.16 0.83 8.06 -2.91 -0.02 0.80 16 42 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 43 H 0.12 2.44 8.06 -2.92 -0.02 2.41 16 44 H 0.08 2.77 7.72 -2.91 -0.02 2.75 16 Total: -1.00 -82.23 371.21 2.54 -79.69 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: 0.99 Total: 8.99 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: 6.54 Total: 8.73 kcal Atomic # 7 Polarization: -99.86 SS G_CDS: -6.85 Total: -106.71 kcal Atomic # 8 Polarization: -41.00 SS G_CDS: -0.16 Total: -41.16 kcal Atomic # 14 Polarization: 48.44 SS G_CDS: 2.03 Total: 50.46 kcal Total: -82.23 2.54 -79.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863268480.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.145 kcal (2) G-P(sol) polarization free energy of solvation -82.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds