Wall clock time and date at job start Tue Mar 31 2020 10:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47539 * 2 1 4 4 H 1.09000 * 109.59497 * 334.78057 * 3 2 1 5 5 C 1.51334 * 109.72968 * 214.38074 * 3 2 1 6 6 O 1.21284 * 120.34697 * 128.40890 * 5 3 2 7 7 N 1.34244 * 119.30007 * 308.42984 * 5 3 2 8 8 C 1.46700 * 120.37306 * 357.15901 * 7 5 3 9 9 C 1.53037 * 109.07237 * 288.68965 * 8 7 5 10 10 C 1.52014 * 110.22715 * 88.53682 * 9 8 7 11 11 N 1.46061 * 111.79572 * 297.56472 * 10 9 8 12 12 C 1.34775 * 119.80808 * 242.92716 * 11 10 9 13 13 O 1.21588 * 119.99706 * 7.58849 * 12 11 10 14 14 C 1.47638 * 120.00188 * 187.58349 * 12 11 10 15 15 C 1.40014 * 119.89639 * 150.54321 * 14 12 11 16 16 C 1.36316 * 120.10290 * 180.25245 * 15 14 12 17 17 C 1.40887 * 119.89670 * 359.52651 * 16 15 14 18 18 C 1.41105 * 120.10554 * 180.22987 * 17 16 15 19 19 H 1.07998 * 120.00286 * 205.56214 * 18 17 16 20 20 C 1.40225 * 120.00279 * 25.55794 * 18 17 16 21 21 N 1.30653 * 119.99866 * 28.91666 * 20 18 17 22 22 Si 1.86800 * 120.00386 * 208.91848 * 20 18 17 23 23 H 1.48497 * 109.47387 * 94.98563 * 22 20 18 24 24 H 1.48504 * 109.47267 * 214.99090 * 22 20 18 25 25 H 1.48501 * 109.46957 * 334.98500 * 22 20 18 26 26 C 1.40888 * 119.79171 * 0.49264 * 17 16 15 27 27 C 1.36313 * 119.88816 * 359.73568 * 26 17 16 28 28 H 1.08999 * 109.47224 * 59.99842 * 1 2 3 29 29 H 1.08996 * 109.47487 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47218 * 300.00258 * 1 2 3 31 31 H 1.08998 * 109.46774 * 239.99688 * 2 1 3 32 32 H 1.08997 * 109.46709 * 120.00080 * 2 1 3 33 33 H 0.97001 * 119.81630 * 177.14091 * 7 5 3 34 34 H 1.08993 * 109.54068 * 48.56747 * 8 7 5 35 35 H 1.09004 * 109.53734 * 168.81754 * 8 7 5 36 36 H 1.08993 * 109.35942 * 208.88734 * 9 8 7 37 37 H 1.09005 * 109.35556 * 328.46342 * 9 8 7 38 38 H 1.09005 * 108.96115 * 176.92910 * 10 9 8 39 39 H 1.09000 * 108.89440 * 58.14692 * 10 9 8 40 40 H 1.07992 * 119.94709 * 359.97438 * 15 14 12 41 41 H 1.08008 * 120.05034 * 179.72194 * 16 15 14 42 42 H 0.97000 * 119.99856 * 180.02562 * 21 20 18 43 43 H 1.07994 * 120.05553 * 179.75892 * 26 17 16 44 44 H 1.08002 * 119.94526 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.2861 2.0968 -0.4375 5 6 3.3188 1.5321 -0.8044 6 8 3.4332 2.3603 -1.6830 7 7 4.3249 0.6851 -0.5354 8 6 4.2110 -0.2756 0.5673 9 6 4.2933 0.4774 1.8971 10 6 2.9087 0.9302 2.3312 11 7 2.3197 1.8654 1.3762 12 6 2.0368 3.1259 1.7603 13 8 2.3959 3.5239 2.8516 14 6 1.2909 4.0233 0.8560 15 6 0.4761 5.0301 1.3879 16 6 -0.2185 5.8578 0.5568 17 6 -0.1078 5.7054 -0.8394 18 6 -0.8211 6.5629 -1.7037 19 1 -1.0820 6.2321 -2.6982 20 6 -1.1913 7.8445 -1.2716 21 7 -0.4646 8.4698 -0.3839 22 14 -2.7234 8.6577 -1.9648 23 1 -3.8713 8.4062 -1.0570 24 1 -2.4970 10.1207 -2.0830 25 1 -3.0199 8.0930 -3.3059 26 6 0.7129 4.6906 -1.3699 27 6 1.4001 3.8647 -0.5309 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.1317 0.7082 -1.0735 34 1 3.2550 -0.7949 0.5011 35 1 5.0248 -0.9983 0.5067 36 1 4.7156 -0.1786 2.6582 37 1 4.9355 1.3502 1.7788 38 1 2.9836 1.4151 3.3046 39 1 2.2628 0.0566 2.4187 40 1 0.3943 5.1482 2.4582 41 1 -0.8503 6.6313 0.9681 42 1 -0.7208 9.3562 -0.0847 43 1 0.7979 4.5675 -2.4394 44 1 2.0292 3.0862 -0.9365 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886506955.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:35 Heat of formation + Delta-G solvation = -24.275642 kcal Electronic energy + Delta-G solvation = -27632.932617 eV Core-core repulsion = 23936.845794 eV Total energy + Delta-G solvation = -3696.086823 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.54435 -40.23295 -39.17257 -38.00724 -36.30297 -35.56864 -34.11871 -32.75981 -31.81152 -31.36280 -28.36123 -28.07467 -26.53816 -24.44920 -23.86245 -22.72840 -21.85922 -21.42060 -20.58288 -19.34359 -18.67342 -18.32658 -17.56198 -17.15308 -17.03802 -16.17957 -16.11796 -15.79505 -15.56947 -15.15165 -14.89200 -14.82743 -14.49179 -14.39749 -14.22435 -14.12921 -13.80103 -13.51937 -13.26270 -13.15471 -12.97755 -12.85095 -12.57713 -12.48949 -12.25459 -12.09481 -12.03563 -11.77256 -11.52470 -11.39141 -11.07169 -10.86811 -10.55022 -10.08012 -9.74129 -9.51582 -9.43537 -8.89010 -6.47663 0.45055 1.09546 1.21520 1.34528 1.40700 1.52268 1.92209 2.14135 2.18021 2.30889 2.62743 3.32279 3.58669 3.64824 3.72224 3.90197 4.03356 4.13290 4.28773 4.34676 4.42217 4.45407 4.54226 4.63730 4.66072 4.76887 4.87989 4.93199 4.96934 5.00344 5.06762 5.08568 5.15767 5.25439 5.31598 5.40986 5.55857 5.59508 5.76477 5.82342 5.91123 5.98741 6.11418 6.20793 6.31311 6.50887 6.73693 6.87369 7.08561 7.24335 8.09434 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.021530 B = 0.003848 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.219172 B = 7274.800851 C = 7616.494002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.133 4.133 3 C 0.082 3.918 4 H 0.136 0.864 5 C 0.501 3.499 6 O -0.571 6.571 7 N -0.706 5.706 8 C 0.079 3.921 9 C -0.154 4.154 10 C 0.091 3.909 11 N -0.594 5.594 12 C 0.573 3.427 13 O -0.594 6.594 14 C -0.304 4.304 15 C -0.044 4.044 16 C -0.207 4.207 17 C 0.107 3.893 18 C -0.482 4.482 19 H 0.090 0.910 20 C 0.044 3.956 21 N -0.793 5.793 22 Si 0.986 3.014 23 H -0.259 1.259 24 H -0.264 1.264 25 H -0.251 1.251 26 C -0.250 4.250 27 C -0.090 4.090 28 H 0.046 0.954 29 H 0.089 0.911 30 H 0.043 0.957 31 H 0.098 0.902 32 H 0.118 0.882 33 H 0.407 0.593 34 H 0.116 0.884 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.043 0.957 38 H 0.074 0.926 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.298 0.702 43 H 0.100 0.900 44 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.341 -20.789 1.337 21.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.170 4.170 3 C -0.025 4.025 4 H 0.153 0.847 5 C 0.286 3.714 6 O -0.451 6.451 7 N -0.358 5.358 8 C -0.043 4.043 9 C -0.193 4.193 10 C -0.030 4.030 11 N -0.327 5.327 12 C 0.368 3.632 13 O -0.477 6.477 14 C -0.309 4.309 15 C -0.064 4.064 16 C -0.226 4.226 17 C 0.104 3.896 18 C -0.508 4.508 19 H 0.108 0.892 20 C -0.177 4.177 21 N -0.415 5.415 22 Si 0.804 3.196 23 H -0.183 1.183 24 H -0.188 1.188 25 H -0.174 1.174 26 C -0.270 4.270 27 C -0.107 4.107 28 H 0.065 0.935 29 H 0.108 0.892 30 H 0.062 0.938 31 H 0.117 0.883 32 H 0.136 0.864 33 H 0.244 0.756 34 H 0.133 0.867 35 H 0.148 0.852 36 H 0.145 0.855 37 H 0.062 0.938 38 H 0.093 0.907 39 H 0.126 0.874 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.109 0.891 43 H 0.118 0.882 44 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 4.497 -19.996 1.730 20.568 hybrid contribution -0.062 1.413 -0.274 1.441 sum 4.436 -18.583 1.456 19.160 Atomic orbital electron populations 1.21835 0.94425 1.03275 1.01593 1.22306 0.97466 0.91650 1.05541 1.22708 0.95357 1.02033 0.82386 0.84705 1.21491 0.87048 0.79936 0.82914 1.90692 1.81738 1.37253 1.35423 1.45995 1.18216 1.36680 1.34889 1.22631 1.07553 0.90784 0.83304 1.22292 0.95923 1.01235 0.99819 1.21556 0.95446 0.93417 0.92541 1.47549 1.63045 1.11001 1.11121 1.18523 0.77348 0.81846 0.85457 1.90610 1.55881 1.75909 1.25334 1.19161 1.12738 1.05454 0.93502 1.20463 0.94818 0.93343 0.97743 1.20661 1.06005 1.02296 0.93663 1.18083 0.87869 0.91057 0.92635 1.20081 1.30852 0.98425 1.01468 0.89175 1.27032 0.99577 0.97334 0.93790 1.69851 1.34560 1.13086 1.24047 0.85149 0.76885 0.77428 0.80099 1.18315 1.18847 1.17401 1.20850 1.05001 1.02857 0.98244 1.22510 0.97467 0.98461 0.92251 0.93464 0.89222 0.93807 0.88323 0.86448 0.75622 0.86685 0.85176 0.85467 0.93841 0.90709 0.87405 0.88703 0.88678 0.89052 0.88205 0.80976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.71 71.98 0.70 -2.24 16 2 C -0.13 -2.31 3.95 30.59 0.12 -2.19 16 3 C 0.08 2.37 1.90 44.42 0.08 2.46 16 4 H 0.14 4.95 3.48 -5.30 -0.02 4.93 16 5 C 0.50 15.08 6.61 87.94 0.58 15.66 16 6 O -0.57 -22.94 15.60 -3.04 -0.05 -22.99 16 7 N -0.71 -13.53 5.29 -462.55 -2.45 -15.98 16 8 C 0.08 0.81 6.33 86.35 0.55 1.36 16 9 C -0.15 -2.32 5.91 30.28 0.18 -2.14 16 10 C 0.09 2.02 5.52 86.14 0.48 2.49 16 11 N -0.59 -19.13 2.59 -807.07 -2.09 -21.22 16 12 C 0.57 25.68 7.44 86.73 0.65 26.33 16 13 O -0.59 -29.62 16.01 -3.99 -0.06 -29.68 16 14 C -0.30 -15.34 5.64 -19.93 -0.11 -15.45 16 15 C -0.04 -2.38 9.52 22.25 0.21 -2.17 16 16 C -0.21 -11.59 8.70 22.47 0.20 -11.40 16 17 C 0.11 6.01 5.54 -21.28 -0.12 5.89 16 18 C -0.48 -26.01 8.96 23.46 0.21 -25.80 16 19 H 0.09 4.63 7.99 -2.91 -0.02 4.60 16 20 C 0.04 2.18 4.84 85.35 0.41 2.59 16 21 N -0.79 -41.66 11.77 21.87 0.26 -41.40 16 22 Si 0.99 36.89 29.65 68.60 2.03 38.92 16 23 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 24 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 25 H -0.25 -9.04 7.11 99.48 0.71 -8.33 16 26 C -0.25 -13.31 9.73 22.47 0.22 -13.09 16 27 C -0.09 -4.43 7.44 22.25 0.17 -4.27 16 28 H 0.05 1.05 8.12 -2.39 -0.02 1.03 16 29 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.10 1.34 7.56 -2.39 -0.02 1.32 16 32 H 0.12 1.34 3.57 -2.39 -0.01 1.33 16 33 H 0.41 6.76 8.93 -92.71 -0.83 5.93 16 34 H 0.12 0.85 3.66 -2.39 -0.01 0.84 16 35 H 0.13 0.34 8.14 -2.38 -0.02 0.33 16 36 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.04 0.97 8.04 -2.38 -0.02 0.95 16 38 H 0.07 2.04 6.89 -2.38 -0.02 2.02 16 39 H 0.11 1.55 6.29 -2.39 -0.02 1.53 16 40 H 0.09 4.93 7.90 -2.91 -0.02 4.90 16 41 H 0.10 5.39 6.64 -2.91 -0.02 5.37 16 42 H 0.30 13.89 8.29 -92.71 -0.77 13.12 16 43 H 0.10 5.09 8.06 -2.91 -0.02 5.06 16 44 H 0.17 7.73 1.39 -15.78 -0.02 7.71 16 Total: -1.00 -78.27 339.33 2.37 -75.90 By element: Atomic # 1 Polarization: 38.19 SS G_CDS: 0.21 Total: 38.40 kcal Atomic # 6 Polarization: -26.48 SS G_CDS: 4.52 Total: -21.96 kcal Atomic # 7 Polarization: -74.32 SS G_CDS: -4.28 Total: -78.60 kcal Atomic # 8 Polarization: -52.56 SS G_CDS: -0.11 Total: -52.67 kcal Atomic # 14 Polarization: 36.89 SS G_CDS: 2.03 Total: 38.92 kcal Total: -78.27 2.37 -75.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886506955.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.628 kcal (2) G-P(sol) polarization free energy of solvation -78.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds