Wall clock time and date at job start Tue Mar 31 2020 10:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46542 * 2 1 4 4 H 1.09001 * 109.73279 * 30.50355 * 3 2 1 5 5 C 1.50777 * 109.53346 * 150.58300 * 3 2 1 6 6 O 1.21275 * 120.34810 * 231.59455 * 5 3 2 7 7 N 1.34251 * 119.29900 * 51.67011 * 5 3 2 8 8 C 1.46693 * 120.36961 * 2.83471 * 7 5 3 9 9 C 1.53033 * 109.07367 * 71.25516 * 8 7 5 10 10 C 1.52459 * 110.16684 * 271.31847 * 9 8 7 11 11 N 1.46065 * 111.51742 * 62.66640 * 10 9 8 12 12 C 1.34772 * 119.80945 * 117.06205 * 11 10 9 13 13 O 1.21589 * 119.99930 * 175.31291 * 12 11 10 14 14 C 1.47638 * 120.00231 * 355.30919 * 12 11 10 15 15 C 1.40013 * 119.89804 * 317.08151 * 14 12 11 16 16 C 1.36315 * 120.10996 * 179.97438 * 15 14 12 17 17 C 1.40891 * 119.89113 * 359.97438 * 16 15 14 18 18 C 1.41111 * 120.10558 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00108 * 209.41445 * 18 17 16 20 20 C 1.40224 * 119.99813 * 29.68885 * 18 17 16 21 21 N 1.30650 * 120.00111 * 10.51501 * 20 18 17 22 22 Si 1.86802 * 120.00169 * 190.51632 * 20 18 17 23 23 H 1.48499 * 109.47301 * 59.99676 * 22 20 18 24 24 H 1.48496 * 109.47136 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46986 * 299.99962 * 22 20 18 26 26 C 1.40888 * 119.79157 * 0.28129 * 17 16 15 27 27 C 1.36313 * 119.89306 * 359.44044 * 26 17 16 28 28 H 1.08998 * 109.47400 * 299.99856 * 1 2 3 29 29 H 1.08996 * 109.47477 * 59.99879 * 1 2 3 30 30 H 1.09005 * 109.47031 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46903 * 240.00050 * 2 1 3 32 32 H 1.08997 * 109.46833 * 119.99439 * 2 1 3 33 33 H 0.97005 * 119.81331 * 182.80828 * 7 5 3 34 34 H 1.08996 * 109.53790 * 311.36882 * 8 7 5 35 35 H 1.09008 * 109.60052 * 191.16683 * 8 7 5 36 36 H 1.08998 * 109.35955 * 151.10175 * 9 8 7 37 37 H 1.09000 * 109.35408 * 31.52415 * 9 8 7 38 38 H 1.09001 * 109.07027 * 302.13596 * 10 9 8 39 39 H 1.09007 * 109.06823 * 183.19312 * 10 9 8 40 40 H 1.08003 * 119.94438 * 359.95220 * 15 14 12 41 41 H 1.08000 * 120.05883 * 179.97438 * 16 15 14 42 42 H 0.97000 * 119.99871 * 180.02562 * 21 20 18 43 43 H 1.08003 * 120.05225 * 179.70008 * 26 17 16 44 44 H 1.07996 * 119.95000 * 180.27682 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3290 2.0841 0.5208 5 6 3.3749 1.5054 0.6979 6 8 3.5633 2.3059 1.5892 7 7 4.3533 0.6668 0.3213 8 6 4.1472 -0.2580 -0.7986 9 6 4.1223 0.5373 -2.1058 10 6 2.7027 1.0013 -2.4119 11 7 2.2013 1.9073 -1.3817 12 6 1.8905 3.1791 -1.7015 13 8 1.3932 3.9114 -0.8679 14 6 2.1539 3.6832 -3.0639 15 6 3.3605 3.3717 -3.7022 16 6 3.6079 3.8344 -4.9603 17 6 2.6469 4.6269 -5.6186 18 6 2.8981 5.1078 -6.9213 19 1 2.4589 6.0391 -7.2471 20 6 3.7134 4.3736 -7.7946 21 7 4.0720 3.1560 -7.4851 22 14 4.2867 5.1364 -9.4005 23 1 5.0789 6.3590 -9.1127 24 1 5.1299 4.1618 -10.1382 25 1 3.1063 5.4947 -10.2274 26 6 1.4365 4.9422 -4.9702 27 6 1.1956 4.4702 -3.7143 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 5.2014 0.6726 0.7921 34 1 3.1985 -0.7794 -0.6710 35 1 4.9605 -0.9831 -0.8286 36 1 4.4794 -0.0938 -2.9196 37 1 4.7740 1.4061 -2.0125 38 1 2.0485 0.1314 -2.4703 39 1 2.6956 1.5158 -3.3729 40 1 4.0965 2.7640 -3.1968 41 1 4.5391 3.5939 -5.4517 42 1 4.6363 2.6483 -8.0890 43 1 0.6989 5.5534 -5.4690 44 1 0.2662 4.7076 -3.2181 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886525632.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:50 Heat of formation + Delta-G solvation = -33.625351 kcal Electronic energy + Delta-G solvation = -27334.935327 eV Core-core repulsion = 23638.443070 eV Total energy + Delta-G solvation = -3696.492257 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.99773 -38.84480 -37.24258 -36.81305 -34.65828 -34.03174 -33.33547 -31.06311 -30.20582 -29.55359 -27.48283 -25.93962 -25.53841 -23.36553 -22.19532 -21.09271 -20.67978 -20.18709 -18.94872 -17.55300 -17.29746 -17.09242 -16.41117 -15.85126 -15.49423 -14.82240 -14.43468 -14.28299 -14.22113 -13.99930 -13.71862 -13.40037 -13.25787 -12.92758 -12.75603 -12.69116 -12.20736 -12.08442 -11.96639 -11.93418 -11.62251 -11.37303 -11.29509 -11.26582 -11.16118 -10.95002 -10.58837 -10.48189 -10.07864 -9.96209 -9.55568 -9.41232 -9.07669 -9.04069 -8.36494 -7.71468 -7.51416 -6.97792 -4.62528 2.22322 2.52599 2.93607 2.94003 2.95211 2.98056 3.24848 3.49630 3.63304 3.76492 4.39501 4.46582 4.65509 4.69359 4.84354 4.91216 5.13220 5.21793 5.33858 5.38681 5.46305 5.56105 5.59995 5.71198 5.77598 5.81694 5.91540 5.97526 6.12462 6.16443 6.21419 6.27384 6.73899 6.79569 6.80726 6.84220 6.98939 7.08844 7.19232 7.41308 7.52280 7.74470 7.83057 7.92724 8.05179 8.24374 8.38837 8.63259 8.71800 8.84384 9.94283 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.020153 B = 0.003706 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.006588 B = 7553.907181 C = 8066.613963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.144 4.144 3 C 0.128 3.872 4 H 0.125 0.875 5 C 0.513 3.487 6 O -0.538 6.538 7 N -0.725 5.725 8 C 0.081 3.919 9 C -0.163 4.163 10 C 0.088 3.912 11 N -0.604 5.604 12 C 0.577 3.423 13 O -0.552 6.552 14 C -0.272 4.272 15 C -0.072 4.072 16 C -0.167 4.167 17 C 0.128 3.872 18 C -0.449 4.449 19 H 0.082 0.918 20 C 0.074 3.926 21 N -0.785 5.785 22 Si 0.915 3.085 23 H -0.262 1.262 24 H -0.276 1.276 25 H -0.263 1.263 26 C -0.230 4.230 27 C -0.032 4.032 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.396 0.604 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.120 0.880 40 H 0.096 0.904 41 H 0.122 0.878 42 H 0.285 0.715 43 H 0.099 0.901 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.581 -12.369 5.533 13.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.182 4.182 3 C 0.020 3.980 4 H 0.142 0.858 5 C 0.297 3.703 6 O -0.413 6.413 7 N -0.379 5.379 8 C -0.043 4.043 9 C -0.202 4.202 10 C -0.034 4.034 11 N -0.340 5.340 12 C 0.371 3.629 13 O -0.430 6.430 14 C -0.276 4.276 15 C -0.091 4.091 16 C -0.186 4.186 17 C 0.125 3.875 18 C -0.477 4.477 19 H 0.100 0.900 20 C -0.145 4.145 21 N -0.410 5.410 22 Si 0.739 3.261 23 H -0.186 1.186 24 H -0.201 1.201 25 H -0.188 1.188 26 C -0.250 4.250 27 C -0.051 4.051 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.232 0.768 34 H 0.116 0.884 35 H 0.103 0.897 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.138 0.862 40 H 0.114 0.886 41 H 0.140 0.860 42 H 0.096 0.904 43 H 0.117 0.883 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.337 -11.752 6.249 13.314 hybrid contribution 0.846 0.102 -0.680 1.091 sum 1.183 -11.650 5.568 12.966 Atomic orbital electron populations 1.21789 0.94421 1.01793 1.02764 1.22286 0.97574 0.94885 1.03421 1.21336 0.94167 0.97680 0.84767 0.85764 1.21181 0.87028 0.79393 0.82651 1.90742 1.82332 1.36583 1.31605 1.46013 1.17024 1.39621 1.35210 1.22343 1.04352 0.91926 0.85644 1.22429 0.98563 1.01450 0.97779 1.21788 0.93296 0.94479 0.93863 1.47772 1.67106 1.12098 1.07001 1.18911 0.75555 0.79797 0.88604 1.90688 1.44782 1.56136 1.51423 1.18812 1.00238 1.13725 0.94839 1.20594 0.95002 0.98381 0.95139 1.21014 1.00417 1.03744 0.93449 1.17775 0.89262 0.88400 0.92102 1.19758 1.24553 1.06614 0.96798 0.89972 1.26015 0.93702 0.94173 1.00632 1.69686 1.26320 1.08270 1.36699 0.86247 0.79588 0.79923 0.80383 1.18631 1.20123 1.18774 1.20748 0.98307 1.09206 0.96711 1.20248 0.96619 0.94167 0.94088 0.92392 0.91996 0.92318 0.88702 0.90705 0.76831 0.88364 0.89739 0.89133 0.90470 0.91525 0.86196 0.88603 0.86003 0.90416 0.88317 0.88627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.75 37.16 0.36 -1.15 16 2 C -0.14 -1.49 3.93 -26.73 -0.10 -1.59 16 3 C 0.13 1.92 2.42 -68.96 -0.17 1.75 16 4 H 0.12 2.19 6.82 -51.93 -0.35 1.84 16 5 C 0.51 8.16 6.85 -11.18 -0.08 8.09 16 6 O -0.54 -10.97 17.94 5.56 0.10 -10.87 16 7 N -0.73 -8.39 5.29 -60.25 -0.32 -8.71 16 8 C 0.08 0.69 6.33 -3.92 -0.02 0.67 16 9 C -0.16 -1.76 5.45 -26.99 -0.15 -1.91 16 10 C 0.09 1.18 4.68 -4.55 -0.02 1.16 16 11 N -0.60 -9.95 2.59 -169.11 -0.44 -10.39 16 12 C 0.58 12.24 7.25 -12.43 -0.09 12.15 16 13 O -0.55 -13.48 16.39 5.29 0.09 -13.39 16 14 C -0.27 -6.02 5.07 -104.73 -0.53 -6.55 16 15 C -0.07 -1.55 7.25 -39.61 -0.29 -1.84 16 16 C -0.17 -3.95 8.59 -39.27 -0.34 -4.28 16 17 C 0.13 3.16 5.54 -106.80 -0.59 2.57 16 18 C -0.45 -10.97 9.05 -37.75 -0.34 -11.31 16 19 H 0.08 1.93 7.87 -52.49 -0.41 1.52 16 20 C 0.07 1.69 5.25 -17.31 -0.09 1.60 16 21 N -0.79 -18.18 10.88 55.56 0.60 -17.58 16 22 Si 0.91 17.14 29.57 -169.99 -5.03 12.11 16 23 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 24 H -0.28 -5.03 7.11 56.52 0.40 -4.63 16 25 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 26 C -0.23 -5.40 9.73 -39.27 -0.38 -5.78 16 27 C -0.03 -0.73 9.59 -39.61 -0.38 -1.11 16 28 H 0.06 0.60 8.12 -51.93 -0.42 0.17 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.10 0.84 3.35 -51.93 -0.17 0.66 16 32 H 0.07 0.68 7.79 -51.93 -0.40 0.27 16 33 H 0.40 4.07 8.93 -40.82 -0.36 3.71 16 34 H 0.10 0.74 3.64 -51.93 -0.19 0.55 16 35 H 0.08 0.50 8.14 -51.92 -0.42 0.07 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 1.02 6.81 -51.93 -0.35 0.66 16 38 H 0.07 0.73 6.40 -51.93 -0.33 0.39 16 39 H 0.12 1.94 4.41 -51.93 -0.23 1.71 16 40 H 0.10 1.83 5.13 -52.48 -0.27 1.56 16 41 H 0.12 2.94 6.27 -52.49 -0.33 2.61 16 42 H 0.28 5.98 8.29 -40.82 -0.34 5.64 16 43 H 0.10 2.17 8.06 -52.48 -0.42 1.75 16 44 H 0.10 2.07 8.06 -52.49 -0.42 1.64 16 LS Contribution 343.25 15.07 5.17 5.17 Total: -1.00 -30.83 343.25 -8.54 -39.36 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -5.50 Total: 11.82 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -3.21 Total: -7.53 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: -0.15 Total: -36.67 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: 0.19 Total: -24.26 kcal Atomic # 14 Polarization: 17.14 SS G_CDS: -5.03 Total: 12.11 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.83 -8.54 -39.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886525632.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.737 kcal (2) G-P(sol) polarization free energy of solvation -30.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds