Wall clock time and date at job start Tue Mar 31 2020 10:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46542 * 2 1 4 4 H 1.09001 * 109.73279 * 30.50355 * 3 2 1 5 5 C 1.50777 * 109.53346 * 150.58300 * 3 2 1 6 6 O 1.21275 * 120.34810 * 231.59455 * 5 3 2 7 7 N 1.34251 * 119.29900 * 51.67011 * 5 3 2 8 8 C 1.46693 * 120.36961 * 2.83471 * 7 5 3 9 9 C 1.53033 * 109.07367 * 71.25516 * 8 7 5 10 10 C 1.52459 * 110.16684 * 271.31847 * 9 8 7 11 11 N 1.46065 * 111.51742 * 62.66640 * 10 9 8 12 12 C 1.34772 * 119.80945 * 117.06205 * 11 10 9 13 13 O 1.21589 * 119.99930 * 175.31291 * 12 11 10 14 14 C 1.47638 * 120.00231 * 355.30919 * 12 11 10 15 15 C 1.40013 * 119.89804 * 317.08151 * 14 12 11 16 16 C 1.36315 * 120.10996 * 179.97438 * 15 14 12 17 17 C 1.40891 * 119.89113 * 359.97438 * 16 15 14 18 18 C 1.41111 * 120.10558 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00108 * 209.41445 * 18 17 16 20 20 C 1.40224 * 119.99813 * 29.68885 * 18 17 16 21 21 N 1.30650 * 120.00111 * 10.51501 * 20 18 17 22 22 Si 1.86802 * 120.00169 * 190.51632 * 20 18 17 23 23 H 1.48499 * 109.47301 * 59.99676 * 22 20 18 24 24 H 1.48496 * 109.47136 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46986 * 299.99962 * 22 20 18 26 26 C 1.40888 * 119.79157 * 0.28129 * 17 16 15 27 27 C 1.36313 * 119.89306 * 359.44044 * 26 17 16 28 28 H 1.08998 * 109.47400 * 299.99856 * 1 2 3 29 29 H 1.08996 * 109.47477 * 59.99879 * 1 2 3 30 30 H 1.09005 * 109.47031 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46903 * 240.00050 * 2 1 3 32 32 H 1.08997 * 109.46833 * 119.99439 * 2 1 3 33 33 H 0.97005 * 119.81331 * 182.80828 * 7 5 3 34 34 H 1.08996 * 109.53790 * 311.36882 * 8 7 5 35 35 H 1.09008 * 109.60052 * 191.16683 * 8 7 5 36 36 H 1.08998 * 109.35955 * 151.10175 * 9 8 7 37 37 H 1.09000 * 109.35408 * 31.52415 * 9 8 7 38 38 H 1.09001 * 109.07027 * 302.13596 * 10 9 8 39 39 H 1.09007 * 109.06823 * 183.19312 * 10 9 8 40 40 H 1.08003 * 119.94438 * 359.95220 * 15 14 12 41 41 H 1.08000 * 120.05883 * 179.97438 * 16 15 14 42 42 H 0.97000 * 119.99871 * 180.02562 * 21 20 18 43 43 H 1.08003 * 120.05225 * 179.70008 * 26 17 16 44 44 H 1.07996 * 119.95000 * 180.27682 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3290 2.0841 0.5208 5 6 3.3749 1.5054 0.6979 6 8 3.5633 2.3059 1.5892 7 7 4.3533 0.6668 0.3213 8 6 4.1472 -0.2580 -0.7986 9 6 4.1223 0.5373 -2.1058 10 6 2.7027 1.0013 -2.4119 11 7 2.2013 1.9073 -1.3817 12 6 1.8905 3.1791 -1.7015 13 8 1.3932 3.9114 -0.8679 14 6 2.1539 3.6832 -3.0639 15 6 3.3605 3.3717 -3.7022 16 6 3.6079 3.8344 -4.9603 17 6 2.6469 4.6269 -5.6186 18 6 2.8981 5.1078 -6.9213 19 1 2.4589 6.0391 -7.2471 20 6 3.7134 4.3736 -7.7946 21 7 4.0720 3.1560 -7.4851 22 14 4.2867 5.1364 -9.4005 23 1 5.0789 6.3590 -9.1127 24 1 5.1299 4.1618 -10.1382 25 1 3.1063 5.4947 -10.2274 26 6 1.4365 4.9422 -4.9702 27 6 1.1956 4.4702 -3.7143 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 5.2014 0.6726 0.7921 34 1 3.1985 -0.7794 -0.6710 35 1 4.9605 -0.9831 -0.8286 36 1 4.4794 -0.0938 -2.9196 37 1 4.7740 1.4061 -2.0125 38 1 2.0485 0.1314 -2.4703 39 1 2.6956 1.5158 -3.3729 40 1 4.0965 2.7640 -3.1968 41 1 4.5391 3.5939 -5.4517 42 1 4.6363 2.6483 -8.0890 43 1 0.6989 5.5534 -5.4690 44 1 0.2662 4.7076 -3.2181 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886525632.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:49 Heat of formation + Delta-G solvation = -53.861944 kcal Electronic energy + Delta-G solvation = -27335.812851 eV Core-core repulsion = 23638.443070 eV Total energy + Delta-G solvation = -3697.369782 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.25691 -40.38514 -38.93214 -38.18275 -35.79216 -35.70566 -34.54940 -32.18183 -31.90815 -31.35679 -28.75243 -27.33706 -26.82499 -24.32368 -23.82119 -22.87478 -21.86423 -21.39367 -20.28107 -19.33987 -18.57014 -18.34507 -17.83878 -17.20484 -17.04171 -16.03237 -15.94850 -15.84560 -15.55003 -15.15672 -14.90181 -14.65727 -14.63089 -14.37605 -14.26936 -13.79582 -13.65585 -13.62891 -13.33767 -13.17323 -12.97001 -12.82450 -12.68456 -12.53604 -12.36140 -12.17875 -12.04318 -11.76482 -11.51168 -11.33992 -11.12739 -11.08039 -10.74163 -10.09524 -9.73926 -9.51291 -9.31897 -8.70113 -6.46771 0.49568 1.10952 1.22292 1.41692 1.45907 1.52444 1.87094 2.17774 2.20943 2.31818 2.72457 3.33024 3.61486 3.64988 3.83125 3.89904 3.94668 4.09706 4.26863 4.30074 4.38997 4.41457 4.49505 4.59911 4.63187 4.76624 4.88727 4.92516 4.96866 5.01396 5.06132 5.09243 5.15191 5.28155 5.32318 5.36316 5.54462 5.61549 5.74313 5.85776 5.95427 6.00301 6.11495 6.23579 6.37492 6.56390 6.81296 6.88994 7.10543 7.21693 8.24489 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.020153 B = 0.003706 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.006588 B = 7553.907181 C = 8066.613963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.134 4.134 3 C 0.125 3.875 4 H 0.090 0.910 5 C 0.507 3.493 6 O -0.595 6.595 7 N -0.707 5.707 8 C 0.080 3.920 9 C -0.159 4.159 10 C 0.079 3.921 11 N -0.592 5.592 12 C 0.571 3.429 13 O -0.596 6.596 14 C -0.278 4.278 15 C -0.056 4.056 16 C -0.183 4.183 17 C 0.103 3.897 18 C -0.482 4.482 19 H 0.080 0.920 20 C 0.040 3.960 21 N -0.805 5.805 22 Si 0.984 3.016 23 H -0.263 1.263 24 H -0.263 1.263 25 H -0.261 1.261 26 C -0.244 4.244 27 C -0.041 4.041 28 H 0.047 0.953 29 H 0.042 0.958 30 H 0.088 0.912 31 H 0.120 0.880 32 H 0.097 0.903 33 H 0.405 0.595 34 H 0.117 0.883 35 H 0.129 0.871 36 H 0.122 0.878 37 H 0.051 0.949 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.119 0.881 41 H 0.115 0.885 42 H 0.295 0.705 43 H 0.104 0.896 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.865 -15.643 4.711 16.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.170 4.170 3 C 0.018 3.982 4 H 0.108 0.892 5 C 0.292 3.708 6 O -0.474 6.474 7 N -0.359 5.359 8 C -0.042 4.042 9 C -0.198 4.198 10 C -0.042 4.042 11 N -0.325 5.325 12 C 0.365 3.635 13 O -0.478 6.478 14 C -0.282 4.282 15 C -0.075 4.075 16 C -0.202 4.202 17 C 0.100 3.900 18 C -0.510 4.510 19 H 0.098 0.902 20 C -0.178 4.178 21 N -0.429 5.429 22 Si 0.805 3.195 23 H -0.187 1.187 24 H -0.187 1.187 25 H -0.185 1.185 26 C -0.263 4.263 27 C -0.060 4.060 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.138 0.862 32 H 0.116 0.884 33 H 0.242 0.758 34 H 0.135 0.865 35 H 0.147 0.853 36 H 0.140 0.860 37 H 0.070 0.930 38 H 0.121 0.879 39 H 0.110 0.890 40 H 0.137 0.863 41 H 0.133 0.867 42 H 0.106 0.894 43 H 0.122 0.878 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.651 -15.122 5.404 16.143 hybrid contribution 0.440 1.026 -0.390 1.183 sum 2.091 -14.095 5.014 15.106 Atomic orbital electron populations 1.21796 0.94240 1.03282 1.01421 1.22329 0.97647 0.91465 1.05604 1.21434 0.93562 1.00098 0.83069 0.89215 1.21319 0.87941 0.79408 0.82112 1.90715 1.83260 1.39178 1.34288 1.46000 1.16192 1.38481 1.35211 1.22658 1.07303 0.91364 0.82902 1.22438 0.95744 1.01320 1.00314 1.22062 0.96070 0.94579 0.91518 1.47709 1.65547 1.10828 1.08433 1.18841 0.75652 0.81235 0.87794 1.90663 1.46955 1.57818 1.52332 1.19029 1.00302 1.13493 0.95403 1.20715 0.94969 0.97474 0.94332 1.20992 1.00138 1.04792 0.94285 1.18097 0.89902 0.89203 0.92833 1.20006 1.26330 1.07232 0.97413 0.90151 1.26767 0.93110 0.94357 1.03556 1.69703 1.26134 1.08999 1.38041 0.85206 0.79088 0.79068 0.76173 1.18727 1.18667 1.18540 1.20871 0.98473 1.09842 0.97156 1.20398 0.97170 0.94370 0.94074 0.93350 0.93917 0.89281 0.86250 0.88431 0.75797 0.86537 0.85322 0.85951 0.93008 0.87901 0.88996 0.86295 0.86680 0.89377 0.87751 0.88230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.75 71.98 0.70 -2.00 16 2 C -0.13 -2.34 3.93 30.59 0.12 -2.22 16 3 C 0.13 3.69 2.42 44.24 0.11 3.80 16 4 H 0.09 3.31 6.82 -2.39 -0.02 3.30 16 5 C 0.51 15.77 6.85 87.76 0.60 16.38 16 6 O -0.59 -24.88 17.94 -3.01 -0.05 -24.93 16 7 N -0.71 -14.34 5.29 -463.21 -2.45 -16.79 16 8 C 0.08 0.96 6.33 86.35 0.55 1.51 16 9 C -0.16 -2.84 5.45 30.43 0.17 -2.68 16 10 C 0.08 1.93 4.68 86.28 0.40 2.33 16 11 N -0.59 -19.20 2.59 -807.20 -2.09 -21.30 16 12 C 0.57 24.91 7.25 86.73 0.63 25.54 16 13 O -0.60 -30.52 16.39 -4.00 -0.07 -30.59 16 14 C -0.28 -12.64 5.07 -19.93 -0.10 -12.74 16 15 C -0.06 -2.44 7.25 22.25 0.16 -2.28 16 16 C -0.18 -8.82 8.59 22.47 0.19 -8.62 16 17 C 0.10 5.23 5.54 -21.28 -0.12 5.12 16 18 C -0.48 -24.08 9.05 23.46 0.21 -23.87 16 19 H 0.08 3.89 7.87 -2.91 -0.02 3.87 16 20 C 0.04 1.82 5.25 85.35 0.45 2.26 16 21 N -0.80 -36.96 10.88 21.87 0.24 -36.73 16 22 Si 0.98 34.52 29.57 68.60 2.03 36.55 16 23 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 24 H -0.26 -8.56 7.11 99.48 0.71 -7.85 16 25 H -0.26 -9.01 7.11 99.48 0.71 -8.31 16 26 C -0.24 -11.90 9.73 22.47 0.22 -11.69 16 27 C -0.04 -1.94 9.59 22.25 0.21 -1.72 16 28 H 0.05 0.96 8.12 -2.39 -0.02 0.94 16 29 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.12 1.49 3.35 -2.39 -0.01 1.48 16 32 H 0.10 1.36 7.79 -2.39 -0.02 1.34 16 33 H 0.41 7.20 8.93 -92.70 -0.83 6.37 16 34 H 0.12 1.06 3.64 -2.39 -0.01 1.05 16 35 H 0.13 0.62 8.14 -2.38 -0.02 0.60 16 36 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.05 1.23 6.81 -2.39 -0.02 1.22 16 38 H 0.10 1.81 6.40 -2.39 -0.02 1.79 16 39 H 0.09 2.86 4.41 -2.38 -0.01 2.85 16 40 H 0.12 4.50 5.13 -2.91 -0.01 4.49 16 41 H 0.12 5.64 6.27 -2.91 -0.02 5.63 16 42 H 0.30 12.06 8.29 -92.71 -0.77 11.30 16 43 H 0.10 4.80 8.06 -2.91 -0.02 4.78 16 44 H 0.10 4.52 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -72.70 343.25 2.34 -70.36 By element: Atomic # 1 Polarization: 34.07 SS G_CDS: 0.23 Total: 34.30 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: 4.50 Total: -10.88 kcal Atomic # 7 Polarization: -70.51 SS G_CDS: -4.31 Total: -74.81 kcal Atomic # 8 Polarization: -55.40 SS G_CDS: -0.12 Total: -55.52 kcal Atomic # 14 Polarization: 34.52 SS G_CDS: 2.03 Total: 36.55 kcal Total: -72.70 2.34 -70.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886525632.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.497 kcal (2) G-P(sol) polarization free energy of solvation -72.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds