Wall clock time and date at job start Tue Mar 31 2020 10:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47550 * 2 1 4 4 H 1.08996 * 109.46851 * 54.44259 * 3 2 1 5 5 C 1.50692 * 109.47114 * 174.44525 * 3 2 1 6 6 H 1.08003 * 120.00191 * 120.00486 * 5 3 2 7 7 C 1.37884 * 120.00418 * 299.99740 * 5 3 2 8 8 N 1.31522 * 119.99101 * 0.02562 * 7 5 3 9 9 Si 1.86792 * 120.00442 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47119 * 89.99996 * 9 7 5 11 11 H 1.48504 * 109.47215 * 210.00111 * 9 7 5 12 12 H 1.48499 * 109.47411 * 330.00089 * 9 7 5 13 13 N 1.46905 * 109.46998 * 294.44507 * 3 2 1 14 14 C 1.46900 * 110.99679 * 157.93241 * 13 3 2 15 15 C 1.50704 * 109.46692 * 182.49040 * 14 13 3 16 16 C 1.41553 * 126.13694 * 266.53650 * 15 14 13 17 17 C 1.40121 * 133.36097 * 359.29477 * 16 15 14 18 18 C 1.36431 * 119.83304 * 180.40847 * 17 16 15 19 19 C 1.38950 * 120.61376 * 0.24633 * 18 17 16 20 20 C 1.37665 * 120.65117 * 0.02562 * 19 18 17 21 21 C 1.39237 * 119.81395 * 359.97438 * 20 19 18 22 22 N 1.37472 * 133.17007 * 179.97438 * 21 20 19 23 23 H 0.97001 * 125.60341 * 0.03659 * 22 21 20 24 24 C 1.35950 * 126.14334 * 86.24596 * 15 14 13 25 25 C 1.46896 * 125.43991 * 0.03895 * 24 15 14 26 26 O 1.21574 * 119.99759 * 354.81075 * 25 24 15 27 27 O 1.34845 * 119.99776 * 174.81252 * 25 24 15 28 28 C 1.45197 * 116.99450 * 179.97438 * 27 25 24 29 29 H 1.09006 * 109.47298 * 304.75921 * 1 2 3 30 30 H 1.09004 * 109.47166 * 64.75643 * 1 2 3 31 31 H 1.09001 * 109.47596 * 184.75830 * 1 2 3 32 32 H 1.09010 * 109.46992 * 239.99780 * 2 1 3 33 33 H 1.09004 * 109.47311 * 120.00628 * 2 1 3 34 34 H 0.97005 * 119.99498 * 179.97438 * 8 7 5 35 35 H 1.00897 * 110.99954 * 33.97121 * 13 3 2 36 36 H 1.08998 * 109.47404 * 62.49122 * 14 13 3 37 37 H 1.09000 * 109.46942 * 302.48265 * 14 13 3 38 38 H 1.08008 * 120.08458 * 0.67855 * 17 16 15 39 39 H 1.08000 * 119.69347 * 180.22980 * 18 17 16 40 40 H 1.07998 * 119.67407 * 179.97438 * 19 18 17 41 41 H 1.08007 * 120.09289 * 180.02562 * 20 19 18 42 42 H 1.09001 * 109.47501 * 300.00094 * 28 27 25 43 43 H 1.09006 * 109.47376 * 60.00620 * 28 27 25 44 44 H 1.09003 * 109.46996 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5977 1.9842 0.8360 5 6 3.5407 1.4445 0.1375 6 1 4.1531 1.8866 -0.6344 7 6 4.1320 0.8822 1.2490 8 7 3.3862 0.3435 2.1888 9 14 5.9921 0.8855 1.4198 10 1 6.4225 2.1207 2.1229 11 1 6.4196 -0.3031 2.2007 12 1 6.6131 0.8414 0.0716 13 7 1.6629 2.0952 -1.2609 14 6 1.6504 3.5567 -1.1138 15 6 1.2010 4.1878 -2.4065 16 6 2.0424 4.6450 -3.4489 17 6 3.4329 4.6791 -3.6180 18 6 3.9651 5.2019 -4.7603 19 6 3.1408 5.7068 -5.7584 20 6 1.7719 5.6896 -5.6136 21 6 1.2047 5.1614 -4.4569 22 7 -0.0934 5.0086 -4.0310 23 1 -0.8848 5.2734 -4.5255 24 6 -0.0854 4.4151 -2.7831 25 6 -1.2764 4.0839 -1.9897 26 8 -1.1599 3.4773 -0.9426 27 8 -2.4990 4.4525 -2.4230 28 6 -3.6307 4.0912 -1.5882 29 1 -0.3634 0.5859 0.8443 30 1 -0.3634 0.4383 -0.9296 31 1 -0.3634 -1.0241 0.0852 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.8021 -0.0524 2.9706 35 1 0.7712 1.7571 -1.5905 36 1 2.6533 3.9059 -0.8684 37 1 0.9629 3.8356 -0.3152 38 1 4.0817 4.2887 -2.8478 39 1 5.0371 5.2237 -4.8898 40 1 3.5783 6.1174 -6.6564 41 1 1.1396 6.0841 -6.3953 42 1 -3.6723 3.0072 -1.4817 43 1 -3.5180 4.5488 -0.6052 44 1 -4.5515 4.4468 -2.0506 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894470416.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:51 Heat of formation + Delta-G solvation = -27.727636 kcal Electronic energy + Delta-G solvation = -26710.828327 eV Core-core repulsion = 23014.591814 eV Total energy + Delta-G solvation = -3696.236513 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.62770 -40.02036 -37.01301 -36.47276 -36.03873 -33.23150 -31.77210 -30.68331 -29.87841 -29.02587 -27.78879 -26.51214 -24.57138 -23.91723 -22.38379 -21.93436 -21.07487 -19.46982 -19.11327 -18.25181 -17.38699 -16.64718 -16.48790 -16.20125 -15.82526 -14.83563 -14.59687 -14.49570 -14.15176 -14.10777 -13.76149 -13.63704 -13.36005 -13.20937 -12.81117 -12.40302 -12.23448 -12.07185 -11.75425 -11.67694 -11.56477 -11.19140 -11.02209 -10.90979 -10.83781 -10.69675 -10.54333 -10.44454 -9.87134 -9.77440 -9.52967 -9.43258 -8.91979 -8.24598 -8.23239 -7.66702 -7.03800 -5.86482 -3.90301 0.70932 1.67816 2.00155 2.49194 2.98717 3.14359 3.38312 3.44739 3.49229 3.98005 4.53104 4.73622 4.74721 4.96750 4.99105 5.06724 5.12621 5.26317 5.35995 5.41611 5.45221 5.57593 5.67423 5.77286 5.93696 6.09590 6.17080 6.31910 6.33760 6.38534 6.50132 6.56340 6.60403 6.64783 6.79713 6.84102 7.01909 7.14670 7.25167 7.33607 7.42838 7.65548 7.71061 7.90490 8.02589 8.43390 8.51154 8.90458 9.17551 9.73938 11.18884 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.010185 B = 0.005065 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2748.594724 B = 5526.543461 C = 7891.864542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.122 4.122 3 C 0.220 3.780 4 H 0.002 0.998 5 C -0.490 4.490 6 H 0.061 0.939 7 C 0.054 3.946 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.673 5.673 14 C 0.122 3.878 15 C -0.027 4.027 16 C -0.110 4.110 17 C -0.035 4.035 18 C -0.160 4.160 19 C -0.081 4.081 20 C -0.146 4.146 21 C 0.122 3.878 22 N -0.574 5.574 23 H 0.421 0.579 24 C 0.009 3.991 25 C 0.525 3.475 26 O -0.473 6.473 27 O -0.367 6.367 28 C 0.039 3.961 29 H 0.043 0.957 30 H 0.033 0.967 31 H 0.033 0.967 32 H 0.039 0.961 33 H 0.098 0.902 34 H 0.258 0.742 35 H 0.317 0.683 36 H 0.083 0.917 37 H 0.043 0.957 38 H 0.133 0.867 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.119 0.881 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.494 11.257 -13.893 20.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.160 4.160 3 C 0.113 3.887 4 H 0.020 0.980 5 C -0.529 4.529 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.304 5.304 14 C -0.007 4.007 15 C -0.036 4.036 16 C -0.115 4.115 17 C -0.054 4.054 18 C -0.180 4.180 19 C -0.100 4.100 20 C -0.166 4.166 21 C 0.011 3.989 22 N -0.179 5.179 23 H 0.259 0.741 24 C -0.098 4.098 25 C 0.369 3.631 26 O -0.358 6.358 27 O -0.285 6.285 28 C -0.055 4.055 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.116 0.884 34 H 0.068 0.932 35 H 0.135 0.865 36 H 0.101 0.899 37 H 0.061 0.939 38 H 0.151 0.849 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.137 0.863 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.011 10.953 -13.618 19.662 hybrid contribution -0.490 0.143 0.508 0.720 sum -9.501 11.096 -13.110 19.628 Atomic orbital electron populations 1.21831 0.99538 0.99146 0.99785 1.21717 0.91274 1.00263 1.02786 1.19143 0.95213 0.90009 0.84324 0.97998 1.21218 0.91302 1.36288 1.04099 0.92077 1.24957 0.97908 0.95778 0.95930 1.69894 1.34539 1.39626 1.09579 0.86578 0.86043 0.77253 0.77978 1.20957 1.21495 1.19911 1.60873 1.33906 1.01561 1.34062 1.20431 1.00817 0.90196 0.89280 1.19970 0.89094 0.97467 0.97066 1.18023 0.93691 1.05177 0.94573 1.20606 0.92730 0.94667 0.97361 1.20638 0.99889 1.02863 0.94579 1.20867 0.92314 0.98182 0.98660 1.19963 0.95181 1.05687 0.95802 1.18351 0.83443 1.00810 0.96311 1.41695 1.06642 1.53671 1.15884 0.74130 1.18739 0.92024 1.10589 0.88444 1.19996 0.82214 0.76988 0.83922 1.90992 1.85954 1.36673 1.22202 1.86523 1.15833 1.74202 1.51919 1.23267 0.85401 1.01752 0.95051 0.93800 0.94757 0.94803 0.94250 0.88358 0.93219 0.86544 0.89894 0.93946 0.84900 0.85872 0.85800 0.86274 0.91534 0.91642 0.88170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 9.65 37.15 0.36 -2.75 16 2 C -0.12 -3.03 5.38 -26.74 -0.14 -3.18 16 3 C 0.22 5.73 2.02 -68.87 -0.14 5.59 16 4 H 0.00 0.07 7.81 -51.93 -0.41 -0.34 16 5 C -0.49 -13.70 8.48 -34.44 -0.29 -14.00 16 6 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 7 C 0.05 1.53 5.29 -17.81 -0.09 1.43 16 8 N -0.90 -26.03 11.29 55.43 0.63 -25.40 16 9 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 13 N -0.67 -15.28 6.29 -109.22 -0.69 -15.96 16 14 C 0.12 2.52 5.20 -4.97 -0.03 2.49 16 15 C -0.03 -0.48 5.66 -104.18 -0.59 -1.07 16 16 C -0.11 -1.77 6.11 -106.93 -0.65 -2.42 16 17 C -0.04 -0.52 10.06 -39.53 -0.40 -0.92 16 18 C -0.16 -1.95 9.97 -39.97 -0.40 -2.34 16 19 C -0.08 -0.86 10.01 -39.53 -0.40 -1.25 16 20 C -0.15 -1.61 10.08 -39.42 -0.40 -2.01 16 21 C 0.12 1.65 7.25 -83.97 -0.61 1.04 16 22 N -0.57 -7.23 6.19 -7.37 -0.05 -7.28 16 23 H 0.42 3.95 8.96 -40.82 -0.37 3.59 16 24 C 0.01 0.13 6.99 -82.32 -0.58 -0.44 16 25 C 0.53 8.14 7.94 34.23 0.27 8.42 16 26 O -0.47 -8.70 14.29 -19.32 -0.28 -8.98 16 27 O -0.37 -4.53 10.58 -40.89 -0.43 -4.96 16 28 C 0.04 0.37 10.57 101.05 1.07 1.43 16 29 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.03 0.69 6.62 -51.93 -0.34 0.34 16 31 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.04 0.97 8.14 -51.92 -0.42 0.55 16 33 H 0.10 2.71 5.94 -51.93 -0.31 2.40 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.32 7.02 6.33 -39.29 -0.25 6.77 16 36 H 0.08 1.77 7.94 -51.93 -0.41 1.36 16 37 H 0.04 0.93 6.52 -51.93 -0.34 0.59 16 38 H 0.13 2.04 8.06 -52.48 -0.42 1.62 16 39 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 40 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.12 0.99 8.06 -52.48 -0.42 0.56 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 367.48 15.07 5.54 5.54 Total: -1.00 -31.76 367.48 -9.51 -41.26 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -6.20 Total: 9.07 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -3.01 Total: -9.97 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: -0.11 Total: -48.64 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -0.71 Total: -13.94 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.76 -9.51 -41.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894470416.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.537 kcal (2) G-P(sol) polarization free energy of solvation -31.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds