Wall clock time and date at job start Tue Mar 31 2020 10:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47550 * 2 1 4 4 H 1.08996 * 109.46851 * 54.44259 * 3 2 1 5 5 C 1.50692 * 109.47114 * 174.44525 * 3 2 1 6 6 H 1.08003 * 120.00191 * 120.00486 * 5 3 2 7 7 C 1.37884 * 120.00418 * 299.99740 * 5 3 2 8 8 N 1.31522 * 119.99101 * 0.02562 * 7 5 3 9 9 Si 1.86792 * 120.00442 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47119 * 89.99996 * 9 7 5 11 11 H 1.48504 * 109.47215 * 210.00111 * 9 7 5 12 12 H 1.48499 * 109.47411 * 330.00089 * 9 7 5 13 13 N 1.46905 * 109.46998 * 294.44507 * 3 2 1 14 14 C 1.46900 * 110.99679 * 157.93241 * 13 3 2 15 15 C 1.50704 * 109.46692 * 182.49040 * 14 13 3 16 16 C 1.41553 * 126.13694 * 266.53650 * 15 14 13 17 17 C 1.40121 * 133.36097 * 359.29477 * 16 15 14 18 18 C 1.36431 * 119.83304 * 180.40847 * 17 16 15 19 19 C 1.38950 * 120.61376 * 0.24633 * 18 17 16 20 20 C 1.37665 * 120.65117 * 0.02562 * 19 18 17 21 21 C 1.39237 * 119.81395 * 359.97438 * 20 19 18 22 22 N 1.37472 * 133.17007 * 179.97438 * 21 20 19 23 23 H 0.97001 * 125.60341 * 0.03659 * 22 21 20 24 24 C 1.35950 * 126.14334 * 86.24596 * 15 14 13 25 25 C 1.46896 * 125.43991 * 0.03895 * 24 15 14 26 26 O 1.21574 * 119.99759 * 354.81075 * 25 24 15 27 27 O 1.34845 * 119.99776 * 174.81252 * 25 24 15 28 28 C 1.45197 * 116.99450 * 179.97438 * 27 25 24 29 29 H 1.09006 * 109.47298 * 304.75921 * 1 2 3 30 30 H 1.09004 * 109.47166 * 64.75643 * 1 2 3 31 31 H 1.09001 * 109.47596 * 184.75830 * 1 2 3 32 32 H 1.09010 * 109.46992 * 239.99780 * 2 1 3 33 33 H 1.09004 * 109.47311 * 120.00628 * 2 1 3 34 34 H 0.97005 * 119.99498 * 179.97438 * 8 7 5 35 35 H 1.00897 * 110.99954 * 33.97121 * 13 3 2 36 36 H 1.08998 * 109.47404 * 62.49122 * 14 13 3 37 37 H 1.09000 * 109.46942 * 302.48265 * 14 13 3 38 38 H 1.08008 * 120.08458 * 0.67855 * 17 16 15 39 39 H 1.08000 * 119.69347 * 180.22980 * 18 17 16 40 40 H 1.07998 * 119.67407 * 179.97438 * 19 18 17 41 41 H 1.08007 * 120.09289 * 180.02562 * 20 19 18 42 42 H 1.09001 * 109.47501 * 300.00094 * 28 27 25 43 43 H 1.09006 * 109.47376 * 60.00620 * 28 27 25 44 44 H 1.09003 * 109.46996 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5977 1.9842 0.8360 5 6 3.5407 1.4445 0.1375 6 1 4.1531 1.8866 -0.6344 7 6 4.1320 0.8822 1.2490 8 7 3.3862 0.3435 2.1888 9 14 5.9921 0.8855 1.4198 10 1 6.4225 2.1207 2.1229 11 1 6.4196 -0.3031 2.2007 12 1 6.6131 0.8414 0.0716 13 7 1.6629 2.0952 -1.2609 14 6 1.6504 3.5567 -1.1138 15 6 1.2010 4.1878 -2.4065 16 6 2.0424 4.6450 -3.4489 17 6 3.4329 4.6791 -3.6180 18 6 3.9651 5.2019 -4.7603 19 6 3.1408 5.7068 -5.7584 20 6 1.7719 5.6896 -5.6136 21 6 1.2047 5.1614 -4.4569 22 7 -0.0934 5.0086 -4.0310 23 1 -0.8848 5.2734 -4.5255 24 6 -0.0854 4.4151 -2.7831 25 6 -1.2764 4.0839 -1.9897 26 8 -1.1599 3.4773 -0.9426 27 8 -2.4990 4.4525 -2.4230 28 6 -3.6307 4.0912 -1.5882 29 1 -0.3634 0.5859 0.8443 30 1 -0.3634 0.4383 -0.9296 31 1 -0.3634 -1.0241 0.0852 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.8021 -0.0524 2.9706 35 1 0.7712 1.7571 -1.5905 36 1 2.6533 3.9059 -0.8684 37 1 0.9629 3.8356 -0.3152 38 1 4.0817 4.2887 -2.8478 39 1 5.0371 5.2237 -4.8898 40 1 3.5783 6.1174 -6.6564 41 1 1.1396 6.0841 -6.3953 42 1 -3.6723 3.0072 -1.4817 43 1 -3.5180 4.5488 -0.6052 44 1 -4.5515 4.4468 -2.0506 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894470416.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:50 Heat of formation + Delta-G solvation = -47.567897 kcal Electronic energy + Delta-G solvation = -26711.688665 eV Core-core repulsion = 23014.591814 eV Total energy + Delta-G solvation = -3697.096851 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.75364 -41.15098 -38.34864 -37.74965 -37.51105 -34.89655 -33.64041 -32.19600 -30.92868 -30.26930 -28.83151 -28.33298 -26.19121 -25.10706 -24.26967 -22.97641 -22.17248 -21.45856 -20.39445 -19.39636 -18.46458 -18.36739 -17.68490 -17.57704 -17.01257 -16.73118 -16.00789 -15.78949 -15.52974 -15.46719 -15.23205 -14.74775 -14.67568 -14.44466 -14.28840 -13.91749 -13.87622 -13.45339 -13.17234 -13.05647 -12.88543 -12.69064 -12.56437 -12.54588 -12.50404 -11.98336 -11.91483 -11.86172 -11.81259 -11.53262 -11.45628 -11.04659 -10.71956 -10.41586 -9.27259 -9.03165 -8.71295 -8.03749 -6.16230 -0.42868 0.67698 0.89586 1.40881 1.43035 1.43772 1.55263 1.88273 2.00959 2.46508 2.96162 3.21023 3.65004 3.72178 3.79938 4.00958 4.09092 4.26034 4.28883 4.29352 4.39989 4.46579 4.53819 4.58847 4.63789 4.65772 4.70306 4.76039 4.82605 4.97078 5.09284 5.12244 5.20879 5.24320 5.36045 5.48934 5.51536 5.58730 5.64777 5.75370 5.77656 5.88237 6.14048 6.37195 6.46052 6.47949 6.56400 6.94923 6.97559 7.52165 9.00203 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.010185 B = 0.005065 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2748.594724 B = 5526.543461 C = 7891.864542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.116 4.116 3 C 0.228 3.772 4 H -0.039 1.039 5 C -0.509 4.509 6 H 0.052 0.948 7 C 0.008 3.992 8 N -0.922 5.922 9 Si 0.959 3.041 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.268 1.268 13 N -0.667 5.667 14 C 0.136 3.864 15 C -0.063 4.063 16 C -0.137 4.137 17 C -0.072 4.072 18 C -0.150 4.150 19 C -0.074 4.074 20 C -0.135 4.135 21 C 0.118 3.882 22 N -0.552 5.552 23 H 0.438 0.562 24 C 0.013 3.987 25 C 0.529 3.471 26 O -0.510 6.510 27 O -0.356 6.356 28 C 0.031 3.969 29 H 0.030 0.970 30 H 0.045 0.955 31 H 0.059 0.941 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.260 0.740 35 H 0.321 0.679 36 H 0.061 0.939 37 H 0.022 0.978 38 H 0.109 0.891 39 H 0.144 0.856 40 H 0.166 0.834 41 H 0.159 0.841 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.935 12.574 -17.241 23.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.155 4.155 3 C 0.120 3.880 4 H -0.022 1.022 5 C -0.548 4.548 6 H 0.071 0.929 7 C -0.190 4.190 8 N -0.562 5.562 9 Si 0.785 3.215 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.193 1.193 13 N -0.298 5.298 14 C 0.007 3.993 15 C -0.073 4.073 16 C -0.141 4.141 17 C -0.091 4.091 18 C -0.168 4.168 19 C -0.094 4.094 20 C -0.155 4.155 21 C 0.007 3.993 22 N -0.158 5.158 23 H 0.280 0.720 24 C -0.095 4.095 25 C 0.374 3.626 26 O -0.399 6.399 27 O -0.272 6.272 28 C -0.062 4.062 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.138 0.862 36 H 0.080 0.920 37 H 0.040 0.960 38 H 0.128 0.872 39 H 0.162 0.838 40 H 0.183 0.817 41 H 0.176 0.824 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -9.491 12.299 -17.015 23.040 hybrid contribution -0.403 -0.180 1.468 1.533 sum -9.895 12.119 -15.546 22.056 Atomic orbital electron populations 1.21663 0.96730 1.00651 0.99826 1.21551 0.93778 0.98961 1.01209 1.18925 0.94297 0.90542 0.84285 1.02191 1.21430 0.92343 1.36666 1.04336 0.92934 1.25733 1.02583 0.95226 0.95443 1.70033 1.36355 1.39934 1.09907 0.85535 0.80374 0.77449 0.78134 1.20343 1.20814 1.19273 1.60788 1.34027 1.02996 1.32031 1.20108 0.99132 0.88941 0.91134 1.19648 0.90845 1.00127 0.96633 1.18179 0.94509 1.06327 0.95076 1.20604 0.92398 0.97446 0.98647 1.20971 1.01384 1.00926 0.93568 1.21357 0.92047 0.96713 0.99237 1.20455 0.95916 1.03883 0.95240 1.18606 0.83098 1.00949 0.96630 1.41562 1.07298 1.52326 1.14619 0.72000 1.18632 0.91330 1.10122 0.89436 1.20051 0.83159 0.76211 0.83217 1.90981 1.86600 1.38501 1.23787 1.86520 1.15280 1.73450 1.51979 1.23626 0.85534 1.01776 0.95255 0.95052 0.93609 0.92207 0.94457 0.91039 0.93103 0.86166 0.92013 0.95986 0.87242 0.83814 0.81661 0.82371 0.91977 0.92052 0.83972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.71 9.65 71.98 0.69 -5.02 16 2 C -0.12 -6.03 5.38 30.59 0.16 -5.87 16 3 C 0.23 12.58 2.02 44.16 0.09 12.67 16 4 H -0.04 -2.46 7.81 -2.39 -0.02 -2.48 16 5 C -0.51 -29.91 8.48 25.60 0.22 -29.69 16 6 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 7 C 0.01 0.46 5.29 84.66 0.45 0.91 16 8 N -0.92 -55.46 11.29 21.45 0.24 -55.21 16 9 Si 0.96 45.65 29.54 68.60 2.03 47.68 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 12 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 13 N -0.67 -32.25 6.29 -499.47 -3.14 -35.39 16 14 C 0.14 6.12 5.20 85.56 0.45 6.56 16 15 C -0.06 -2.33 5.66 -19.58 -0.11 -2.44 16 16 C -0.14 -4.46 6.11 -21.36 -0.13 -4.59 16 17 C -0.07 -2.21 10.06 22.31 0.22 -1.98 16 18 C -0.15 -3.34 9.97 22.02 0.22 -3.12 16 19 C -0.07 -1.26 10.01 22.30 0.22 -1.03 16 20 C -0.13 -2.41 10.08 22.37 0.23 -2.18 16 21 C 0.12 2.97 7.25 39.14 0.28 3.26 16 22 N -0.55 -12.90 6.19 -177.23 -1.10 -13.99 16 23 H 0.44 6.91 8.96 -92.71 -0.83 6.07 16 24 C 0.01 0.41 6.99 39.88 0.28 0.69 16 25 C 0.53 16.56 7.94 70.09 0.56 17.11 16 26 O -0.51 -19.65 14.29 19.59 0.28 -19.37 16 27 O -0.36 -8.30 10.58 -57.58 -0.61 -8.91 16 28 C 0.03 0.53 10.57 113.37 1.20 1.73 16 29 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 30 H 0.04 1.86 6.62 -2.38 -0.02 1.85 16 31 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 33 H 0.07 4.10 5.94 -2.39 -0.01 4.09 16 34 H 0.26 14.83 8.31 -92.70 -0.77 14.06 16 35 H 0.32 14.89 6.33 -89.70 -0.57 14.32 16 36 H 0.06 2.93 7.94 -2.39 -0.02 2.92 16 37 H 0.02 1.06 6.52 -2.39 -0.02 1.05 16 38 H 0.11 3.71 8.06 -2.91 -0.02 3.69 16 39 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 40 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 41 H 0.16 1.64 8.06 -2.91 -0.02 1.61 16 42 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.06 1.13 8.14 -2.38 -0.02 1.12 16 44 H 0.14 1.26 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -73.58 367.48 2.36 -71.22 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: -0.36 Total: 26.97 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: 5.03 Total: -12.99 kcal Atomic # 7 Polarization: -100.60 SS G_CDS: -4.00 Total: -104.60 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -0.33 Total: -28.27 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -73.58 2.36 -71.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894470416.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.650 kcal (2) G-P(sol) polarization free energy of solvation -73.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds