Wall clock time and date at job start Tue Mar 31 2020 11:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47082 * 2 1 4 4 H 1.08997 * 109.47471 * 305.51712 * 3 2 1 5 5 C 1.50708 * 109.47362 * 185.51869 * 3 2 1 6 6 H 1.07998 * 119.99735 * 245.60195 * 5 3 2 7 7 C 1.37872 * 119.99895 * 65.60300 * 5 3 2 8 8 N 1.31515 * 120.00006 * 196.24399 * 7 5 3 9 9 Si 1.86801 * 120.00211 * 16.23903 * 7 5 3 10 10 H 1.48493 * 109.47376 * 180.02562 * 9 7 5 11 11 H 1.48505 * 109.47133 * 300.00266 * 9 7 5 12 12 H 1.48504 * 109.47178 * 60.00008 * 9 7 5 13 13 N 1.46503 * 109.47333 * 65.52082 * 3 2 1 14 14 C 1.34778 * 119.99693 * 275.00469 * 13 3 2 15 15 O 1.21282 * 120.00150 * 359.97438 * 14 13 3 16 16 C 1.50706 * 119.99674 * 179.97438 * 14 13 3 17 17 H 1.09002 * 110.85756 * 52.65513 * 16 14 13 18 18 C 1.54728 * 110.97251 * 288.81226 * 16 14 13 19 19 C 1.51699 * 102.54900 * 217.66388 * 18 16 14 20 20 C 1.47646 * 125.86523 * 195.43808 * 19 18 16 21 21 C 1.39607 * 120.14835 * 359.68990 * 20 19 18 22 22 C 1.37956 * 119.84704 * 179.78878 * 21 20 19 23 23 C 1.38357 * 120.14832 * 0.46912 * 22 21 20 24 24 C 1.50705 * 119.84893 * 179.76135 * 23 22 21 25 25 C 1.38357 * 120.30272 * 359.78947 * 23 22 21 26 26 C 1.37958 * 120.14613 * 359.97438 * 25 23 22 27 27 N 1.29079 * 108.26789 * 15.39304 * 19 18 16 28 28 O 1.41396 * 112.87235 * 0.31794 * 27 19 18 29 29 H 1.08999 * 109.46963 * 59.99807 * 1 2 3 30 30 H 1.09009 * 109.46869 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47003 * 299.99754 * 1 2 3 32 32 H 1.09002 * 109.47494 * 240.00209 * 2 1 3 33 33 H 1.09003 * 109.47449 * 120.00220 * 2 1 3 34 34 H 0.96997 * 120.00076 * 354.84888 * 8 7 5 35 35 H 0.97005 * 120.00234 * 94.99632 * 13 3 2 36 36 H 1.09001 * 110.79590 * 335.92429 * 18 16 14 37 37 H 1.08997 * 110.79559 * 99.40296 * 18 16 14 38 38 H 1.08005 * 120.08093 * 0.02931 * 21 20 19 39 39 H 1.08004 * 119.92637 * 180.23419 * 22 21 20 40 40 H 1.09002 * 109.47198 * 270.02597 * 24 23 22 41 41 H 1.08999 * 109.46800 * 30.02738 * 24 23 22 42 42 H 1.08995 * 109.46874 * 150.02625 * 24 23 22 43 43 H 1.07997 * 119.92536 * 179.97438 * 25 23 22 44 44 H 1.08000 * 120.07286 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.5982 1.9840 -0.8364 5 6 3.5408 1.4447 -0.1366 6 1 4.1563 1.8044 0.6746 7 6 4.1280 0.9877 -1.2973 8 7 5.4082 0.6866 -1.3122 9 14 3.1053 0.7958 -2.8487 10 1 3.9653 0.2915 -3.9493 11 1 2.0043 -0.1691 -2.5996 12 1 2.5332 2.1120 -3.2303 13 7 1.6631 2.0937 1.2571 14 6 0.4468 2.6601 1.3843 15 8 -0.3356 2.6311 0.4581 16 6 0.0590 3.3295 2.6777 17 1 0.8092 4.0619 2.9758 18 6 -0.1706 2.2843 3.7951 19 6 -1.3485 2.8660 4.5537 20 6 -1.7955 2.4599 5.9010 21 6 -1.1193 1.4512 6.5896 22 6 -1.5397 1.0796 7.8499 23 6 -2.6346 1.6975 8.4275 24 6 -3.0913 1.2825 9.8025 25 6 -3.3126 2.6942 7.7484 26 6 -2.8999 3.0788 6.4894 27 7 -1.8922 3.7778 3.8193 28 8 -1.2439 3.9386 2.5731 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 5.9554 0.8562 -0.5296 35 1 2.2890 2.1171 1.9978 36 1 -0.4254 1.3133 3.3704 37 1 0.7051 2.2082 4.4397 38 1 -0.2667 0.9654 6.1384 39 1 -1.0152 0.3020 8.3854 40 1 -3.8200 0.4766 9.7155 41 1 -2.2345 0.9369 10.3809 42 1 -3.5496 2.1340 10.3054 43 1 -4.1668 3.1721 8.2048 44 1 -3.4302 3.8566 5.9602 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907386124.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:17 Heat of formation + Delta-G solvation = -21.421726 kcal Electronic energy + Delta-G solvation = -25793.713273 eV Core-core repulsion = 22097.750205 eV Total energy + Delta-G solvation = -3695.963068 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.87656 -40.52028 -39.79122 -37.11377 -35.23316 -34.55736 -33.55618 -32.62503 -32.22812 -31.57151 -29.12306 -27.97034 -25.91411 -24.26445 -23.42156 -23.31587 -22.29587 -21.35001 -20.92484 -19.93184 -18.54271 -18.26952 -17.18264 -16.99644 -16.74731 -16.30491 -16.01174 -15.76507 -15.55871 -15.22542 -14.77631 -14.60732 -14.50127 -14.42421 -14.36380 -14.17151 -14.10122 -13.83894 -13.61472 -13.15112 -13.00798 -12.81125 -12.68927 -12.51790 -12.33982 -12.31620 -12.14732 -11.81827 -11.71470 -11.43457 -11.27578 -11.10908 -10.64968 -10.49359 -9.95192 -9.92798 -9.42795 -8.80036 -6.45271 -0.37425 0.42714 1.13232 1.39465 1.43947 1.49302 1.62294 1.68608 2.38231 2.40756 2.79373 2.84018 3.00234 3.27541 3.30011 3.64761 3.84355 3.94371 3.96962 4.04203 4.27800 4.29725 4.36095 4.39236 4.45009 4.48081 4.50882 4.61762 4.81047 4.82407 4.86425 4.89399 5.07069 5.10871 5.16941 5.24418 5.27442 5.40023 5.40733 5.51946 5.56382 5.62913 5.63826 5.96269 6.00574 6.15322 6.51892 6.69919 7.22320 7.32732 8.60074 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.024301 B = 0.002712 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.956624 B =10323.602765 C =10782.441441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.135 4.135 3 C 0.251 3.749 4 H 0.018 0.982 5 C -0.610 4.610 6 H 0.046 0.954 7 C -0.002 4.002 8 N -0.927 5.927 9 Si 1.066 2.934 10 H -0.283 1.283 11 H -0.243 1.243 12 H -0.279 1.279 13 N -0.688 5.688 14 C 0.509 3.491 15 O -0.566 6.566 16 C 0.026 3.974 17 H 0.132 0.868 18 C -0.131 4.131 19 C 0.146 3.854 20 C -0.073 4.073 21 C -0.077 4.077 22 C -0.127 4.127 23 C -0.064 4.064 24 C -0.119 4.119 25 C -0.131 4.131 26 C -0.088 4.088 27 N -0.320 5.320 28 O -0.206 6.206 29 H 0.034 0.966 30 H 0.059 0.941 31 H 0.045 0.955 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.260 0.740 35 H 0.408 0.592 36 H 0.110 0.890 37 H 0.154 0.846 38 H 0.151 0.849 39 H 0.156 0.844 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.146 0.854 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.401 -1.061 24.880 28.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.173 4.173 3 C 0.147 3.853 4 H 0.036 0.964 5 C -0.648 4.648 6 H 0.064 0.936 7 C -0.203 4.203 8 N -0.562 5.562 9 Si 0.889 3.111 10 H -0.208 1.208 11 H -0.168 1.168 12 H -0.205 1.205 13 N -0.338 5.338 14 C 0.293 3.707 15 O -0.445 6.445 16 C -0.036 4.036 17 H 0.150 0.850 18 C -0.170 4.170 19 C -0.043 4.043 20 C -0.075 4.075 21 C -0.097 4.097 22 C -0.145 4.145 23 C -0.065 4.065 24 C -0.175 4.175 25 C -0.149 4.149 26 C -0.108 4.108 27 N -0.063 5.063 28 O -0.222 6.222 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.244 0.756 36 H 0.128 0.872 37 H 0.172 0.828 38 H 0.169 0.831 39 H 0.173 0.827 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.164 0.836 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -15.724 -0.729 22.291 27.289 hybrid contribution 1.360 0.502 1.288 1.939 sum -14.364 -0.227 23.580 27.611 Atomic orbital electron populations 1.21780 0.95939 1.00421 1.01087 1.22248 0.94883 0.98107 1.02095 1.18824 0.93735 0.89809 0.82973 0.96393 1.22242 0.91129 1.48059 1.03356 0.93557 1.26669 0.97678 0.92263 1.03730 1.70975 1.07964 1.43176 1.34098 0.83776 0.75279 0.78488 0.73530 1.20833 1.16798 1.20474 1.45936 1.14582 1.55708 1.17620 1.20382 0.82399 0.78929 0.88958 1.90703 1.51871 1.59912 1.42039 1.23655 0.89328 0.96632 0.93968 0.85015 1.23022 0.99410 0.99979 0.94565 1.24666 0.94262 0.90864 0.94482 1.17881 0.99201 1.00916 0.89455 1.21521 0.99183 0.94282 0.94716 1.21344 0.97255 1.00955 0.94935 1.20538 0.94285 0.94200 0.97470 1.20935 1.02660 1.02655 0.91256 1.21245 1.01131 0.98378 0.94112 1.21424 0.94896 0.98661 0.95818 1.78452 1.17850 1.17427 0.92596 1.91348 1.26976 1.76787 1.27115 0.94661 0.92212 0.93607 0.92164 0.91748 0.93071 0.75612 0.87168 0.82779 0.83131 0.82686 0.89909 0.89995 0.90468 0.83646 0.86029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.17 8.53 71.98 0.61 -4.56 16 2 C -0.13 -5.62 5.28 30.59 0.16 -5.46 16 3 C 0.25 11.50 1.82 44.24 0.08 11.58 16 4 H 0.02 0.94 6.26 -2.39 -0.01 0.92 16 5 C -0.61 -31.96 9.01 25.60 0.23 -31.72 16 6 H 0.05 2.53 7.96 -2.91 -0.02 2.50 16 7 C 0.00 -0.12 5.32 84.65 0.45 0.33 16 8 N -0.93 -54.80 13.70 21.45 0.29 -54.51 16 9 Si 1.07 49.95 26.27 68.60 1.80 51.75 16 10 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 11 H -0.24 -10.35 5.66 99.48 0.56 -9.79 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 13 N -0.69 -25.68 5.03 -446.08 -2.24 -27.92 16 14 C 0.51 19.10 5.73 87.66 0.50 19.60 16 15 O -0.57 -26.34 13.73 14.97 0.21 -26.13 16 16 C 0.03 0.77 4.23 30.44 0.13 0.90 16 17 H 0.13 3.19 8.14 -2.39 -0.02 3.17 16 18 C -0.13 -2.77 5.81 30.76 0.18 -2.59 16 19 C 0.15 3.48 7.16 45.77 0.33 3.81 16 20 C -0.07 -1.39 5.87 -20.13 -0.12 -1.51 16 21 C -0.08 -1.04 9.61 22.53 0.22 -0.82 16 22 C -0.13 -1.35 9.68 22.23 0.22 -1.14 16 23 C -0.06 -0.69 5.89 -19.81 -0.12 -0.81 16 24 C -0.12 -0.64 10.01 71.24 0.71 0.07 16 25 C -0.13 -1.75 9.68 22.23 0.22 -1.53 16 26 C -0.09 -1.61 9.69 22.53 0.22 -1.39 16 27 N -0.32 -10.03 12.12 -42.22 -0.51 -10.54 16 28 O -0.21 -7.57 11.82 -20.32 -0.24 -7.81 16 29 H 0.03 1.46 7.88 -2.39 -0.02 1.44 16 30 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 31 H 0.04 1.74 5.63 -2.39 -0.01 1.72 16 32 H 0.06 2.64 4.73 -2.39 -0.01 2.63 16 33 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.26 15.29 8.73 -92.71 -0.81 14.48 16 35 H 0.41 12.74 8.53 -92.70 -0.79 11.94 16 36 H 0.11 2.41 7.90 -2.39 -0.02 2.39 16 37 H 0.15 1.93 7.96 -2.39 -0.02 1.91 16 38 H 0.15 1.37 7.38 -2.91 -0.02 1.35 16 39 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 40 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 41 H 0.08 0.28 8.08 -2.39 -0.02 0.26 16 42 H 0.08 0.32 8.08 -2.39 -0.02 0.30 16 43 H 0.15 1.33 8.06 -2.91 -0.02 1.30 16 44 H 0.12 2.42 7.84 -2.91 -0.02 2.40 16 Total: -1.00 -73.96 361.47 3.37 -70.59 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.05 Total: 19.81 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: 4.02 Total: -15.23 kcal Atomic # 7 Polarization: -90.51 SS G_CDS: -2.46 Total: -92.97 kcal Atomic # 8 Polarization: -33.91 SS G_CDS: -0.03 Total: -33.94 kcal Atomic # 14 Polarization: 49.95 SS G_CDS: 1.80 Total: 51.75 kcal Total: -73.96 3.37 -70.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907386124.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.166 kcal (2) G-P(sol) polarization free energy of solvation -73.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds