Wall clock time and date at job start Tue Mar 31 2020 11:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46889 * 2 1 4 4 N 1.46900 * 109.47221 * 177.77055 * 3 2 1 5 5 C 1.46901 * 110.99917 * 199.14597 * 4 3 2 6 6 C 1.50701 * 109.47046 * 66.04416 * 5 4 3 7 7 H 1.07994 * 119.99986 * 359.97438 * 6 5 4 8 8 C 1.37883 * 119.99844 * 179.97438 * 6 5 4 9 9 N 1.31508 * 119.99738 * 0.02562 * 8 6 5 10 10 Si 1.86791 * 120.00015 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47176 * 89.99774 * 10 8 6 12 12 H 1.48504 * 109.47422 * 210.00271 * 10 8 6 13 13 H 1.48508 * 109.47228 * 330.00051 * 10 8 6 14 14 C 1.46903 * 111.00042 * 75.18945 * 4 3 2 15 15 C 1.50698 * 109.46831 * 197.09103 * 14 4 3 16 16 C 1.38667 * 120.41961 * 254.80942 * 15 14 4 17 17 C 1.38630 * 118.42421 * 179.97438 * 16 15 14 18 18 C 1.38226 * 119.15616 * 0.02562 * 17 16 15 19 19 C 1.50706 * 119.61744 * 179.97438 * 18 17 16 20 20 F 1.39898 * 109.47279 * 185.02048 * 19 18 17 21 21 F 1.39895 * 109.47172 * 305.02673 * 19 18 17 22 22 F 1.39904 * 109.46519 * 65.02385 * 19 18 17 23 23 N 1.31852 * 120.76601 * 359.97438 * 18 17 16 24 24 C 1.31883 * 121.72442 * 0.02562 * 23 18 17 25 25 C 1.50703 * 119.61470 * 179.72222 * 24 23 18 26 26 H 1.09005 * 109.47285 * 304.57562 * 1 2 3 27 27 H 1.08995 * 109.47102 * 64.57904 * 1 2 3 28 28 H 1.09005 * 109.46518 * 184.57887 * 1 2 3 29 29 H 1.08998 * 109.47231 * 239.99942 * 2 1 3 30 30 H 1.08997 * 109.47331 * 119.99672 * 2 1 3 31 31 H 1.08999 * 109.47342 * 57.76512 * 3 2 1 32 32 H 1.09011 * 109.46882 * 297.76923 * 3 2 1 33 33 H 1.09002 * 109.47051 * 186.04553 * 5 4 3 34 34 H 1.09004 * 109.47056 * 306.04550 * 5 4 3 35 35 H 0.97007 * 119.99988 * 180.02562 * 9 8 6 36 36 H 1.09001 * 109.46706 * 77.09232 * 14 4 3 37 37 H 1.08997 * 109.47315 * 317.09475 * 14 4 3 38 38 H 1.08004 * 120.79027 * 359.96584 * 16 15 14 39 39 H 1.07997 * 120.42579 * 179.97438 * 17 16 15 40 40 H 1.08998 * 109.47248 * 95.85463 * 25 24 23 41 41 H 1.09001 * 109.47171 * 215.85323 * 25 24 23 42 42 H 1.08994 * 109.47607 * 335.85471 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5080 1.4430 0.0539 5 6 4.0178 2.7445 0.5058 6 6 3.6064 2.9756 1.9371 7 1 3.0241 2.2304 2.4586 8 6 3.9734 4.1384 2.5807 9 7 4.6821 5.0460 1.9454 10 14 3.4641 4.4246 4.3549 11 1 4.5085 3.8859 5.2628 12 1 3.3029 5.8812 4.5949 13 1 2.1758 3.7342 4.6176 14 6 4.0827 1.0754 -1.2472 15 6 5.5249 0.6783 -1.0650 16 6 6.5435 1.5347 -1.4548 17 6 7.8555 1.1278 -1.2677 18 6 8.1029 -0.1094 -0.7033 19 6 9.5252 -0.5624 -0.4957 20 9 9.5310 -1.8788 -0.0222 21 9 10.2163 -0.5006 -1.7104 22 9 10.1485 0.2719 0.4385 23 7 7.1089 -0.8980 -0.3444 24 6 5.8491 -0.5437 -0.5075 25 6 4.7502 -1.4850 -0.0860 26 1 -0.3634 0.5832 0.8462 27 1 -0.3633 0.4411 -0.9281 28 1 -0.3632 -1.0245 0.0820 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6443 1.9678 0.8692 32 1 1.7096 1.9447 -0.9094 33 1 5.1054 2.7533 0.4345 34 1 3.6060 3.5342 -0.1226 35 1 4.9406 5.8639 2.3983 36 1 4.0231 1.9274 -1.9244 37 1 3.5254 0.2380 -1.6670 38 1 6.3201 2.4958 -1.8939 39 1 8.6739 1.7690 -1.5600 40 1 4.4111 -1.2222 0.9160 41 1 3.9167 -1.4062 -0.7839 42 1 5.1280 -2.5074 -0.0851 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141430705.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:52 Heat of formation + Delta-G solvation = -124.249353 kcal Electronic energy + Delta-G solvation = -27115.446617 eV Core-core repulsion = 22873.167868 eV Total energy + Delta-G solvation = -4242.278749 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.06850 -47.61395 -47.50858 -40.45659 -37.33552 -33.69705 -33.26186 -32.88284 -31.71791 -28.29194 -28.02968 -26.89319 -24.98904 -23.82417 -22.49469 -21.83188 -21.13249 -19.94591 -18.46021 -18.45050 -18.16964 -16.62101 -16.26386 -15.79474 -14.95606 -14.65831 -14.53205 -14.38823 -14.33726 -14.28953 -13.99258 -13.97720 -13.69126 -13.68094 -13.67055 -13.21911 -12.88334 -12.65004 -12.32875 -12.17256 -12.10889 -11.93444 -11.78287 -11.55249 -11.31207 -10.98157 -10.80789 -10.73529 -10.41127 -10.14209 -9.97723 -9.58461 -9.56305 -9.27765 -8.79806 -8.50086 -7.42304 -6.09889 -4.10868 0.87934 1.31629 2.57410 3.28188 3.34778 3.37034 3.55176 3.62272 4.02432 4.36861 4.48092 4.66421 4.71080 4.94946 4.99309 5.06036 5.22661 5.26719 5.33796 5.45295 5.52592 5.68038 5.75681 5.79049 5.80658 5.96332 6.01465 6.07484 6.15080 6.17493 6.30128 6.36458 6.37891 6.61548 6.68647 6.74011 7.16601 7.21788 7.70696 7.83855 7.97003 8.07496 8.42180 8.96192 9.53646 11.01001 Molecular weight = 316.15amu Principal moments of inertia in cm(-1) A = 0.011137 B = 0.004491 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.567781 B = 6233.878337 C = 7793.051561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C 0.061 3.939 4 N -0.529 5.529 5 C 0.192 3.808 6 C -0.508 4.508 7 H 0.064 0.936 8 C 0.057 3.943 9 N -0.897 5.897 10 Si 0.896 3.104 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.088 3.912 15 C -0.077 4.077 16 C -0.061 4.061 17 C -0.128 4.128 18 C 0.028 3.972 19 C 0.524 3.476 20 F -0.165 7.165 21 F -0.177 7.177 22 F -0.172 7.172 23 N -0.450 5.450 24 C 0.155 3.845 25 C -0.096 4.096 26 H 0.055 0.945 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.020 0.980 33 H 0.031 0.969 34 H -0.009 1.009 35 H 0.261 0.739 36 H 0.039 0.961 37 H 0.081 0.919 38 H 0.145 0.855 39 H 0.141 0.859 40 H 0.093 0.907 41 H 0.077 0.923 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.784 -10.363 -8.943 13.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.067 4.067 4 N -0.253 5.253 5 C 0.067 3.933 6 C -0.546 4.546 7 H 0.082 0.918 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.724 3.276 11 H -0.206 1.206 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.040 4.040 15 C -0.079 4.079 16 C -0.088 4.088 17 C -0.148 4.148 18 C -0.111 4.111 19 C 0.468 3.532 20 F -0.147 7.147 21 F -0.158 7.158 22 F -0.154 7.154 23 N -0.160 5.160 24 C 0.016 3.984 25 C -0.153 4.153 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.107 0.893 32 H 0.038 0.962 33 H 0.049 0.951 34 H 0.009 0.991 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.099 0.901 38 H 0.162 0.838 39 H 0.159 0.841 40 H 0.111 0.889 41 H 0.095 0.905 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.236 -11.350 -8.193 14.175 hybrid contribution -0.177 1.866 0.112 1.878 sum 2.059 -9.484 -8.081 12.629 Atomic orbital electron populations 1.21736 0.96489 1.00978 1.01569 1.21599 0.94598 0.97838 1.01756 1.22073 0.88104 0.95461 1.01063 1.62134 1.05820 1.35023 1.22329 1.19775 0.95706 0.82260 0.95521 1.21113 1.33920 1.02814 0.96769 0.91794 1.24965 0.95244 0.96000 0.98252 1.69941 1.37902 1.08842 1.36996 0.86529 0.79029 0.77175 0.84886 1.20638 1.21316 1.19798 1.21037 0.89930 0.99870 0.93191 1.20907 0.97261 0.93964 0.95804 1.21551 0.91302 0.99279 0.96625 1.21645 0.98668 0.95459 0.99042 1.20683 0.92384 0.94187 1.03873 1.17926 0.85862 0.75392 0.73981 1.93208 1.96833 1.36253 1.88373 1.93198 1.81395 1.96160 1.45043 1.93237 1.84239 1.71817 1.66087 1.66986 0.99733 1.34016 1.15216 1.21044 0.90493 0.93573 0.93318 1.20738 0.94304 0.96846 1.03383 0.92609 0.93331 0.93226 0.93008 0.91253 0.89253 0.96202 0.95123 0.99129 0.92902 0.94260 0.90134 0.83751 0.84101 0.88858 0.90471 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 37.16 0.37 -1.37 16 2 C -0.12 -1.60 5.98 -26.73 -0.16 -1.76 16 3 C 0.06 1.03 4.80 -3.82 -0.02 1.01 16 4 N -0.53 -9.96 4.26 -237.50 -1.01 -10.97 16 5 C 0.19 4.62 4.56 -4.97 -0.02 4.59 16 6 C -0.51 -13.53 8.24 -34.44 -0.28 -13.81 16 7 H 0.06 1.69 7.30 -52.49 -0.38 1.31 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -25.85 13.29 55.43 0.74 -25.11 16 10 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 14 C 0.09 1.38 4.28 -4.98 -0.02 1.35 16 15 C -0.08 -1.23 4.73 -104.49 -0.49 -1.72 16 16 C -0.06 -0.94 9.10 -39.28 -0.36 -1.30 16 17 C -0.13 -1.88 9.61 -39.44 -0.38 -2.26 16 18 C 0.03 0.44 6.26 -82.58 -0.52 -0.07 16 19 C 0.52 7.70 3.32 36.01 0.12 7.82 16 20 F -0.17 -2.54 16.85 2.25 0.04 -2.50 16 21 F -0.18 -2.36 17.16 2.25 0.04 -2.32 16 22 F -0.17 -2.60 17.28 2.25 0.04 -2.56 16 23 N -0.45 -7.66 9.65 -5.74 -0.06 -7.72 16 24 C 0.15 2.50 6.78 -82.59 -0.56 1.94 16 25 C -0.10 -1.29 9.55 36.01 0.34 -0.94 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.62 6.11 -51.93 -0.32 0.30 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.09 1.74 6.58 -51.93 -0.34 1.40 16 32 H 0.02 0.33 8.01 -51.92 -0.42 -0.09 16 33 H 0.03 0.80 6.75 -51.93 -0.35 0.45 16 34 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 35 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 36 H 0.04 0.61 7.89 -51.93 -0.41 0.20 16 37 H 0.08 1.06 5.12 -51.93 -0.27 0.79 16 38 H 0.14 2.00 8.05 -52.48 -0.42 1.57 16 39 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 40 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.08 0.90 5.76 -51.93 -0.30 0.60 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 356.83 15.07 5.38 5.38 Total: -1.00 -29.19 356.83 -7.66 -36.84 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -5.72 Total: -2.20 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -2.08 Total: -5.06 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: -0.33 Total: -43.80 kcal Atomic # 9 Polarization: -7.49 SS G_CDS: 0.12 Total: -7.38 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.19 -7.66 -36.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141430705.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.405 kcal (2) G-P(sol) polarization free energy of solvation -29.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds