Wall clock time and date at job start Tue Mar 31 2020 11:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46889 * 2 1 4 4 N 1.46900 * 109.47221 * 177.77055 * 3 2 1 5 5 C 1.46901 * 110.99917 * 199.14597 * 4 3 2 6 6 C 1.50701 * 109.47046 * 66.04416 * 5 4 3 7 7 H 1.07994 * 119.99986 * 359.97438 * 6 5 4 8 8 C 1.37883 * 119.99844 * 179.97438 * 6 5 4 9 9 N 1.31508 * 119.99738 * 0.02562 * 8 6 5 10 10 Si 1.86791 * 120.00015 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47176 * 89.99774 * 10 8 6 12 12 H 1.48504 * 109.47422 * 210.00271 * 10 8 6 13 13 H 1.48508 * 109.47228 * 330.00051 * 10 8 6 14 14 C 1.46903 * 111.00042 * 75.18945 * 4 3 2 15 15 C 1.50698 * 109.46831 * 197.09103 * 14 4 3 16 16 C 1.38667 * 120.41961 * 254.80942 * 15 14 4 17 17 C 1.38630 * 118.42421 * 179.97438 * 16 15 14 18 18 C 1.38226 * 119.15616 * 0.02562 * 17 16 15 19 19 C 1.50706 * 119.61744 * 179.97438 * 18 17 16 20 20 F 1.39898 * 109.47279 * 185.02048 * 19 18 17 21 21 F 1.39895 * 109.47172 * 305.02673 * 19 18 17 22 22 F 1.39904 * 109.46519 * 65.02385 * 19 18 17 23 23 N 1.31852 * 120.76601 * 359.97438 * 18 17 16 24 24 C 1.31883 * 121.72442 * 0.02562 * 23 18 17 25 25 C 1.50703 * 119.61470 * 179.72222 * 24 23 18 26 26 H 1.09005 * 109.47285 * 304.57562 * 1 2 3 27 27 H 1.08995 * 109.47102 * 64.57904 * 1 2 3 28 28 H 1.09005 * 109.46518 * 184.57887 * 1 2 3 29 29 H 1.08998 * 109.47231 * 239.99942 * 2 1 3 30 30 H 1.08997 * 109.47331 * 119.99672 * 2 1 3 31 31 H 1.08999 * 109.47342 * 57.76512 * 3 2 1 32 32 H 1.09011 * 109.46882 * 297.76923 * 3 2 1 33 33 H 1.09002 * 109.47051 * 186.04553 * 5 4 3 34 34 H 1.09004 * 109.47056 * 306.04550 * 5 4 3 35 35 H 0.97007 * 119.99988 * 180.02562 * 9 8 6 36 36 H 1.09001 * 109.46706 * 77.09232 * 14 4 3 37 37 H 1.08997 * 109.47315 * 317.09475 * 14 4 3 38 38 H 1.08004 * 120.79027 * 359.96584 * 16 15 14 39 39 H 1.07997 * 120.42579 * 179.97438 * 17 16 15 40 40 H 1.08998 * 109.47248 * 95.85463 * 25 24 23 41 41 H 1.09001 * 109.47171 * 215.85323 * 25 24 23 42 42 H 1.08994 * 109.47607 * 335.85471 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5080 1.4430 0.0539 5 6 4.0178 2.7445 0.5058 6 6 3.6064 2.9756 1.9371 7 1 3.0241 2.2304 2.4586 8 6 3.9734 4.1384 2.5807 9 7 4.6821 5.0460 1.9454 10 14 3.4641 4.4246 4.3549 11 1 4.5085 3.8859 5.2628 12 1 3.3029 5.8812 4.5949 13 1 2.1758 3.7342 4.6176 14 6 4.0827 1.0754 -1.2472 15 6 5.5249 0.6783 -1.0650 16 6 6.5435 1.5347 -1.4548 17 6 7.8555 1.1278 -1.2677 18 6 8.1029 -0.1094 -0.7033 19 6 9.5252 -0.5624 -0.4957 20 9 9.5310 -1.8788 -0.0222 21 9 10.2163 -0.5006 -1.7104 22 9 10.1485 0.2719 0.4385 23 7 7.1089 -0.8980 -0.3444 24 6 5.8491 -0.5437 -0.5075 25 6 4.7502 -1.4850 -0.0860 26 1 -0.3634 0.5832 0.8462 27 1 -0.3633 0.4411 -0.9281 28 1 -0.3632 -1.0245 0.0820 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6443 1.9678 0.8692 32 1 1.7096 1.9447 -0.9094 33 1 5.1054 2.7533 0.4345 34 1 3.6060 3.5342 -0.1226 35 1 4.9406 5.8639 2.3983 36 1 4.0231 1.9274 -1.9244 37 1 3.5254 0.2380 -1.6670 38 1 6.3201 2.4958 -1.8939 39 1 8.6739 1.7690 -1.5600 40 1 4.4111 -1.2222 0.9160 41 1 3.9167 -1.4062 -0.7839 42 1 5.1280 -2.5074 -0.0851 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141430705.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:52 Heat of formation + Delta-G solvation = -140.249364 kcal Electronic energy + Delta-G solvation = -27116.140429 eV Core-core repulsion = 22873.167868 eV Total energy + Delta-G solvation = -4242.972562 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.23963 -48.76517 -48.70037 -41.67065 -38.77739 -35.01331 -34.84404 -34.23595 -33.14310 -29.75540 -29.29558 -28.34771 -26.30526 -25.36932 -23.68526 -23.28462 -22.36548 -21.34217 -19.64682 -19.62568 -19.34182 -18.54999 -17.56121 -17.14539 -16.49512 -16.35141 -15.72101 -15.52283 -15.50853 -15.45278 -15.24581 -15.16600 -15.15678 -14.86771 -14.86057 -14.63719 -14.11996 -13.95577 -13.73964 -13.52249 -13.43029 -13.28017 -13.02358 -12.80880 -12.77950 -12.53877 -12.47187 -12.24877 -11.85948 -11.57290 -11.36393 -11.24873 -10.86469 -10.75592 -10.58660 -10.02384 -8.98758 -8.19920 -6.27162 -0.34329 0.11057 1.39147 1.39336 1.40810 1.50476 2.32425 2.40524 2.43991 2.85199 3.13976 3.28572 3.36603 3.53308 3.71598 3.80088 3.87910 4.02833 4.20158 4.35757 4.41752 4.51463 4.58539 4.68335 4.70512 4.79548 4.91310 4.92885 5.00836 5.04873 5.17907 5.19762 5.24856 5.27104 5.35262 5.51472 5.54402 5.60240 5.67858 6.08730 6.37416 6.61208 6.65366 6.89377 7.41764 8.90657 Molecular weight = 316.15amu Principal moments of inertia in cm(-1) A = 0.011137 B = 0.004491 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.567781 B = 6233.878337 C = 7793.051561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C 0.061 3.939 4 N -0.530 5.530 5 C 0.210 3.790 6 C -0.516 4.516 7 H 0.062 0.938 8 C 0.005 3.995 9 N -0.932 5.932 10 Si 0.957 3.043 11 H -0.280 1.280 12 H -0.284 1.284 13 H -0.263 1.263 14 C 0.092 3.908 15 C -0.091 4.091 16 C -0.071 4.071 17 C -0.127 4.127 18 C 0.014 3.986 19 C 0.530 3.470 20 F -0.170 7.170 21 F -0.167 7.167 22 F -0.175 7.175 23 N -0.470 5.470 24 C 0.144 3.856 25 C -0.091 4.091 26 H 0.044 0.956 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.025 0.975 33 H 0.007 0.993 34 H -0.037 1.037 35 H 0.262 0.738 36 H 0.040 0.960 37 H 0.112 0.888 38 H 0.154 0.846 39 H 0.165 0.835 40 H 0.080 0.920 41 H 0.097 0.903 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.981 -11.579 -9.303 14.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.148 4.148 3 C -0.066 4.066 4 N -0.254 5.254 5 C 0.084 3.916 6 C -0.555 4.555 7 H 0.080 0.920 8 C -0.193 4.193 9 N -0.572 5.572 10 Si 0.783 3.217 11 H -0.206 1.206 12 H -0.209 1.209 13 H -0.187 1.187 14 C -0.036 4.036 15 C -0.093 4.093 16 C -0.097 4.097 17 C -0.148 4.148 18 C -0.125 4.125 19 C 0.475 3.525 20 F -0.151 7.151 21 F -0.148 7.148 22 F -0.157 7.157 23 N -0.179 5.179 24 C 0.005 3.995 25 C -0.148 4.148 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.043 0.957 33 H 0.025 0.975 34 H -0.019 1.019 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.130 0.870 38 H 0.172 0.828 39 H 0.183 0.817 40 H 0.098 0.902 41 H 0.116 0.884 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.420 -12.589 -8.560 15.290 hybrid contribution 0.092 2.232 0.164 2.240 sum 1.512 -10.357 -8.396 13.418 Atomic orbital electron populations 1.21713 0.94952 1.02203 1.01586 1.21518 0.95828 0.94956 1.02481 1.22099 0.86757 0.97933 0.99834 1.62027 1.07062 1.31632 1.24701 1.19364 0.94097 0.84069 0.94108 1.21458 1.33292 1.02641 0.98099 0.92019 1.25775 0.95382 0.95950 1.02238 1.70055 1.39221 1.09334 1.38620 0.85558 0.78954 0.77150 0.80049 1.20594 1.20948 1.18668 1.21102 0.90076 1.00953 0.91489 1.21042 0.97562 0.94308 0.96405 1.21801 0.91663 0.99621 0.96573 1.21916 0.99224 0.95333 0.98283 1.20960 0.92759 0.94690 1.04070 1.17770 0.85504 0.75102 0.74161 1.93197 1.96836 1.36560 1.88485 1.93215 1.81123 1.96096 1.44394 1.93231 1.84232 1.71899 1.66299 1.67020 1.00270 1.34713 1.15914 1.21457 0.90867 0.94085 0.93119 1.20765 0.94148 0.96876 1.02965 0.93706 0.92482 0.91177 0.90804 0.91916 0.92401 0.95680 0.97462 1.01911 0.92925 0.94156 0.86987 0.82845 0.81705 0.90170 0.88443 0.90171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 9.91 71.98 0.71 -2.32 16 2 C -0.11 -2.68 5.98 30.60 0.18 -2.50 16 3 C 0.06 2.04 4.80 86.30 0.41 2.45 16 4 N -0.53 -19.78 4.26 -905.33 -3.85 -23.63 16 5 C 0.21 10.30 4.56 85.56 0.39 10.69 16 6 C -0.52 -27.95 8.24 25.60 0.21 -27.74 16 7 H 0.06 3.29 7.30 -2.91 -0.02 3.27 16 8 C 0.00 0.26 5.46 84.66 0.46 0.72 16 9 N -0.93 -54.63 13.29 21.45 0.28 -54.34 16 10 Si 0.96 43.78 29.54 68.60 2.03 45.81 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 14 C 0.09 2.74 4.28 85.56 0.37 3.10 16 15 C -0.09 -2.83 4.73 -19.78 -0.09 -2.92 16 16 C -0.07 -2.12 9.10 22.47 0.20 -1.92 16 17 C -0.13 -3.64 9.61 22.36 0.21 -3.43 16 18 C 0.01 0.43 6.26 42.55 0.27 0.70 16 19 C 0.53 15.12 3.32 71.24 0.24 15.36 16 20 F -0.17 -5.07 16.85 44.97 0.76 -4.31 16 21 F -0.17 -4.25 17.16 44.97 0.77 -3.48 16 22 F -0.18 -5.15 17.28 44.97 0.78 -4.38 16 23 N -0.47 -15.64 9.65 -172.07 -1.66 -17.30 16 24 C 0.14 4.49 6.78 42.54 0.29 4.78 16 25 C -0.09 -2.28 9.55 71.24 0.68 -1.60 16 26 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 27 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 29 H 0.07 1.48 6.11 -2.39 -0.01 1.47 16 30 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.06 2.28 6.58 -2.39 -0.02 2.26 16 32 H 0.02 0.80 8.01 -2.38 -0.02 0.78 16 33 H 0.01 0.39 6.75 -2.39 -0.02 0.37 16 34 H -0.04 -1.97 8.12 -2.38 -0.02 -1.99 16 35 H 0.26 14.61 8.31 -92.70 -0.77 13.84 16 36 H 0.04 1.21 7.89 -2.39 -0.02 1.19 16 37 H 0.11 2.61 5.12 -2.39 -0.01 2.60 16 38 H 0.15 4.22 8.05 -2.91 -0.02 4.19 16 39 H 0.17 3.75 8.06 -2.91 -0.02 3.73 16 40 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.10 1.98 5.76 -2.39 -0.01 1.96 16 42 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -63.18 356.83 4.68 -58.50 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: 1.04 Total: 7.76 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: 4.54 Total: -4.62 kcal Atomic # 7 Polarization: -90.05 SS G_CDS: -5.23 Total: -95.28 kcal Atomic # 9 Polarization: -14.47 SS G_CDS: 2.31 Total: -12.17 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -63.18 4.68 -58.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141430705.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.752 kcal (2) G-P(sol) polarization free energy of solvation -63.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds