Wall clock time and date at job start Tue Mar 31 2020 11:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47111 * 2 1 4 4 H 1.09003 * 109.46565 * 52.57035 * 3 2 1 5 5 S 1.81392 * 109.47035 * 292.56969 * 3 2 1 6 6 C 1.81395 * 103.00096 * 170.41772 * 5 3 2 7 7 C 1.50695 * 109.47187 * 172.56756 * 3 2 1 8 8 O 1.21285 * 120.00076 * 100.00190 * 7 3 2 9 9 N 1.34774 * 120.00528 * 280.00376 * 7 3 2 10 10 C 1.46501 * 120.00664 * 180.02562 * 9 7 3 11 11 C 1.52993 * 109.47423 * 179.97438 * 10 9 7 12 12 H 1.09008 * 108.45579 * 62.11868 * 11 10 9 13 13 C 1.46916 * 108.62275 * 179.97438 * 11 10 9 14 14 N 1.50116 * 106.77842 * 177.91832 * 13 11 10 15 15 C 1.36940 * 120.63625 * 111.37873 * 14 13 11 16 16 H 1.07994 * 120.00016 * 154.53770 * 15 14 13 17 17 C 1.38812 * 119.99793 * 334.52859 * 15 14 13 18 18 N 1.31621 * 120.00339 * 343.40645 * 17 15 14 19 19 Si 1.86805 * 119.99721 * 163.40866 * 17 15 14 20 20 H 1.48499 * 109.46995 * 59.99944 * 19 17 15 21 21 H 1.48493 * 109.46778 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.46859 * 300.00089 * 19 17 15 23 23 C 1.43427 * 118.72410 * 291.35334 * 14 13 11 24 24 C 1.55324 * 116.24332 * 89.35977 * 23 14 13 25 25 C 1.55190 * 108.86852 * 319.45810 * 24 23 14 26 26 O 1.39640 * 110.56646 * 322.14415 * 25 24 23 27 27 H 1.09001 * 109.46972 * 185.63684 * 1 2 3 28 28 H 1.08996 * 109.47852 * 305.63997 * 1 2 3 29 29 H 1.09004 * 109.46837 * 65.64488 * 1 2 3 30 30 H 1.09003 * 109.47685 * 239.99989 * 2 1 3 31 31 H 1.09000 * 109.47209 * 119.99742 * 2 1 3 32 32 H 1.09003 * 109.47752 * 185.43419 * 6 5 3 33 33 H 1.09004 * 109.47227 * 305.43928 * 6 5 3 34 34 H 1.09002 * 109.47366 * 65.42978 * 6 5 3 35 35 H 0.97008 * 119.99708 * 359.97438 * 9 7 3 36 36 H 1.08994 * 109.46991 * 59.99221 * 10 9 7 37 37 H 1.09002 * 109.46345 * 299.99764 * 10 9 7 38 38 H 1.09004 * 109.98853 * 58.59962 * 13 11 10 39 39 H 1.09003 * 109.99090 * 297.23340 * 13 11 10 40 40 H 0.96992 * 120.00185 * 180.02562 * 18 17 15 41 41 H 1.09001 * 108.12231 * 211.11625 * 23 14 13 42 42 H 1.08999 * 108.12644 * 327.80758 * 23 14 13 43 43 H 1.08997 * 109.57353 * 79.27374 * 24 23 14 44 44 H 1.09000 * 109.57204 * 199.64429 * 24 23 14 45 45 H 1.08995 * 109.26035 * 82.42663 * 25 24 23 46 46 H 1.09004 * 109.25595 * 201.86946 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5721 1.9932 0.8161 5 16 1.6227 2.2314 -1.5792 6 6 2.0305 3.9742 -1.2852 7 6 3.5357 1.4465 0.1838 8 8 4.2642 1.5858 -0.7758 9 7 4.0639 1.2953 1.4144 10 6 5.5179 1.2998 1.5932 11 6 5.8502 1.1126 3.0748 12 1 5.4706 0.1417 3.3937 13 6 7.3109 1.1193 3.2325 14 7 7.5888 0.9853 4.7017 15 6 8.1561 -0.1556 5.2034 16 1 8.7200 -0.1186 6.1237 17 6 8.0061 -1.3597 4.5292 18 7 7.0727 -1.4875 3.6100 19 14 9.1289 -2.7987 4.9265 20 1 8.9745 -3.1668 6.3569 21 1 8.7663 -3.9594 4.0743 22 1 10.5388 -2.4136 4.6639 23 6 7.2492 2.0755 5.5696 24 6 5.8138 2.0596 6.1630 25 6 4.8206 1.6019 5.0618 26 8 5.1873 2.1277 3.8212 27 1 -0.3633 -1.0227 0.1009 28 1 -0.3635 0.5988 0.8351 29 1 -0.3633 0.4238 -0.9363 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.7270 4.5689 -2.1468 33 1 1.5045 4.3258 -0.3975 34 1 3.1053 4.0754 -1.1343 35 1 3.4812 1.1843 2.1820 36 1 5.9236 2.2505 1.2475 37 1 5.9573 0.4860 1.0163 38 1 7.7216 2.0576 2.8596 39 1 7.7479 0.2792 2.6926 40 1 6.9677 -2.3289 3.1391 41 1 7.9582 2.0834 6.3974 42 1 7.3722 3.0039 5.0120 43 1 5.7734 1.3655 7.0024 44 1 5.5475 3.0608 6.5016 45 1 4.8225 0.5134 5.0057 46 1 3.8182 1.9465 5.3162 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149541397.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:42 Heat of formation + Delta-G solvation = -58.191554 kcal Electronic energy + Delta-G solvation = -25847.006014 eV Core-core repulsion = 22284.892437 eV Total energy + Delta-G solvation = -3562.113576 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.73268 -38.78583 -35.06282 -34.79064 -34.52175 -32.17698 -31.19330 -29.31082 -28.77009 -27.83487 -25.41003 -25.16712 -22.72510 -22.10067 -20.83513 -20.17302 -19.62744 -17.36874 -17.02279 -16.65747 -16.05271 -15.44112 -15.19143 -14.92751 -14.75240 -14.52455 -14.23701 -13.91323 -13.74292 -13.56337 -13.26997 -13.08707 -12.89677 -12.56442 -12.38974 -12.25672 -12.08881 -11.94767 -11.43784 -11.35017 -11.24462 -11.13070 -10.87518 -10.77257 -10.53242 -10.21325 -10.10643 -10.01735 -9.74259 -9.63269 -9.53060 -8.85509 -8.72268 -8.54872 -7.64557 -6.84122 -5.95272 -3.36625 1.50367 2.37347 2.80558 3.31328 3.37964 3.39450 3.43571 4.39979 4.59638 4.61887 4.71546 4.88589 5.04745 5.12193 5.15549 5.20377 5.25199 5.27380 5.53356 5.67128 5.67158 5.77255 5.78990 5.87417 5.89830 5.94784 6.09100 6.09962 6.28149 6.37653 6.43663 6.51986 6.62440 6.66107 6.77322 6.87560 6.91274 7.08270 7.30362 7.67541 7.73181 8.08291 8.29576 8.40896 9.03866 9.71121 10.25669 11.13602 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.016950 B = 0.003557 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.542959 B = 7869.856546 C = 8478.139221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.099 4.099 3 C -0.084 4.084 4 H 0.104 0.896 5 S -0.202 6.202 6 C -0.129 4.129 7 C 0.504 3.496 8 O -0.525 6.525 9 N -0.708 5.708 10 C 0.122 3.878 11 C 0.062 3.938 12 H 0.107 0.893 13 C 0.143 3.857 14 N -0.587 5.587 15 C -0.250 4.250 16 H 0.069 0.931 17 C 0.003 3.997 18 N -0.910 5.910 19 Si 0.906 3.094 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.284 1.284 23 C 0.161 3.839 24 C -0.172 4.172 25 C 0.067 3.933 26 O -0.371 6.371 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.400 0.600 36 H 0.060 0.940 37 H 0.079 0.921 38 H 0.018 0.982 39 H 0.106 0.894 40 H 0.256 0.744 41 H 0.033 0.967 42 H 0.031 0.969 43 H 0.056 0.944 44 H 0.049 0.951 45 H 0.063 0.937 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.584 6.154 -4.214 14.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.138 4.138 3 C -0.216 4.216 4 H 0.123 0.877 5 S 0.024 5.976 6 C -0.298 4.298 7 C 0.286 3.714 8 O -0.401 6.401 9 N -0.359 5.359 10 C -0.002 4.002 11 C 0.003 3.997 12 H 0.125 0.875 13 C 0.018 3.982 14 N -0.308 5.308 15 C -0.379 4.379 16 H 0.086 0.914 17 C -0.194 4.194 18 N -0.556 5.556 19 Si 0.736 3.264 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.210 1.210 23 C 0.032 3.968 24 C -0.213 4.213 25 C -0.010 4.010 26 O -0.289 6.289 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.119 0.881 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.234 0.766 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.036 0.964 39 H 0.124 0.876 40 H 0.066 0.934 41 H 0.051 0.949 42 H 0.049 0.951 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.081 0.919 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -12.478 5.852 -6.004 15.033 hybrid contribution 0.763 -0.456 1.971 2.162 sum -11.715 5.396 -4.032 13.514 Atomic orbital electron populations 1.21824 0.94183 1.02043 1.02779 1.21291 0.97104 0.91472 1.03928 1.23635 0.96244 1.02104 0.99602 0.87737 1.86540 1.83680 1.05950 1.21383 1.23443 1.05477 0.95369 1.05519 1.20413 0.89966 0.77427 0.83614 1.90735 1.61260 1.48724 1.39373 1.45880 1.08849 1.72912 1.08275 1.21736 0.78988 1.01900 0.97620 1.22210 0.96984 0.92369 0.88151 0.87520 1.20752 0.92241 0.99359 0.85815 1.44077 1.70216 1.15385 1.01108 1.19239 1.24984 0.85378 1.08316 0.91368 1.24934 0.97683 0.97138 0.99684 1.69816 1.31799 1.25555 1.28383 0.86305 0.80734 0.81688 0.77658 1.21009 1.21583 1.21044 1.20370 0.92096 0.90964 0.93358 1.23580 0.99910 0.99371 0.98463 1.22342 0.95349 0.98686 0.84671 1.87502 1.75973 1.38030 1.27421 0.92165 0.92438 0.91504 0.90358 0.89970 0.88123 0.90676 0.90105 0.76599 0.92117 0.90277 0.96390 0.87647 0.93374 0.94882 0.95082 0.92483 0.93203 0.91898 0.93160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.67 37.15 0.36 -0.94 16 2 C -0.10 -1.06 5.36 -26.73 -0.14 -1.21 16 3 C -0.08 -1.01 2.57 -27.88 -0.07 -1.08 16 4 H 0.10 1.06 8.13 -51.92 -0.42 0.64 16 5 S -0.20 -2.53 20.06 -107.50 -2.16 -4.69 16 6 C -0.13 -1.37 10.65 101.05 1.08 -0.29 16 7 C 0.50 7.85 6.89 -10.99 -0.08 7.78 16 8 O -0.52 -10.08 16.04 5.55 0.09 -9.99 16 9 N -0.71 -10.94 5.40 -60.30 -0.33 -11.26 16 10 C 0.12 2.20 5.27 -4.04 -0.02 2.18 16 11 C 0.06 1.22 2.00 -29.65 -0.06 1.16 16 12 H 0.11 2.37 5.22 -51.92 -0.27 2.10 16 13 C 0.14 3.19 4.70 -4.93 -0.02 3.17 16 14 N -0.59 -13.87 2.61 -174.50 -0.46 -14.32 16 15 C -0.25 -6.42 9.63 -15.06 -0.14 -6.57 16 16 H 0.07 1.75 7.86 -52.49 -0.41 1.34 16 17 C 0.00 0.08 4.98 -17.43 -0.09 0.00 16 18 N -0.91 -23.35 9.45 55.49 0.52 -22.82 16 19 Si 0.91 20.64 29.59 -169.99 -5.03 15.61 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 C 0.16 3.34 5.33 -4.44 -0.02 3.32 16 24 C -0.17 -3.13 6.75 -24.34 -0.16 -3.30 16 25 C 0.07 1.21 6.38 38.32 0.24 1.46 16 26 O -0.37 -6.99 9.34 -31.94 -0.30 -7.29 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.45 8.13 -51.93 -0.42 0.02 16 29 H 0.07 0.60 7.44 -51.93 -0.39 0.21 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.08 0.85 8.13 -51.93 -0.42 0.43 16 32 H 0.10 0.88 8.14 -51.92 -0.42 0.46 16 33 H 0.07 0.68 8.14 -51.92 -0.42 0.25 16 34 H 0.08 0.99 8.14 -51.92 -0.42 0.57 16 35 H 0.40 5.51 8.19 -40.82 -0.33 5.18 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 38 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.11 2.59 6.02 -51.93 -0.31 2.28 16 40 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 41 H 0.03 0.68 7.97 -51.93 -0.41 0.26 16 42 H 0.03 0.63 7.98 -51.93 -0.41 0.22 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.06 1.28 6.66 -51.93 -0.35 0.93 16 46 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 373.59 15.07 5.63 5.63 Total: -1.00 -28.05 373.59 -9.10 -37.15 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -7.94 Total: 6.31 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: 0.87 Total: 5.68 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: -0.26 Total: -48.41 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.21 Total: -17.28 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.03 Total: 15.61 kcal Atomic # 16 Polarization: -2.53 SS G_CDS: -2.16 Total: -4.69 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -28.05 -9.10 -37.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149541397.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.041 kcal (2) G-P(sol) polarization free energy of solvation -28.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds