Wall clock time and date at job start Tue Mar 31 2020 11:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47111 * 2 1 4 4 H 1.09003 * 109.46565 * 52.57035 * 3 2 1 5 5 S 1.81392 * 109.47035 * 292.56969 * 3 2 1 6 6 C 1.81395 * 103.00096 * 170.41772 * 5 3 2 7 7 C 1.50695 * 109.47187 * 172.56756 * 3 2 1 8 8 O 1.21285 * 120.00076 * 100.00190 * 7 3 2 9 9 N 1.34774 * 120.00528 * 280.00376 * 7 3 2 10 10 C 1.46501 * 120.00664 * 180.02562 * 9 7 3 11 11 C 1.52993 * 109.47423 * 179.97438 * 10 9 7 12 12 H 1.09008 * 108.45579 * 62.11868 * 11 10 9 13 13 C 1.46916 * 108.62275 * 179.97438 * 11 10 9 14 14 N 1.50116 * 106.77842 * 177.91832 * 13 11 10 15 15 C 1.36940 * 120.63625 * 111.37873 * 14 13 11 16 16 H 1.07994 * 120.00016 * 154.53770 * 15 14 13 17 17 C 1.38812 * 119.99793 * 334.52859 * 15 14 13 18 18 N 1.31621 * 120.00339 * 343.40645 * 17 15 14 19 19 Si 1.86805 * 119.99721 * 163.40866 * 17 15 14 20 20 H 1.48499 * 109.46995 * 59.99944 * 19 17 15 21 21 H 1.48493 * 109.46778 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.46859 * 300.00089 * 19 17 15 23 23 C 1.43427 * 118.72410 * 291.35334 * 14 13 11 24 24 C 1.55324 * 116.24332 * 89.35977 * 23 14 13 25 25 C 1.55190 * 108.86852 * 319.45810 * 24 23 14 26 26 O 1.39640 * 110.56646 * 322.14415 * 25 24 23 27 27 H 1.09001 * 109.46972 * 185.63684 * 1 2 3 28 28 H 1.08996 * 109.47852 * 305.63997 * 1 2 3 29 29 H 1.09004 * 109.46837 * 65.64488 * 1 2 3 30 30 H 1.09003 * 109.47685 * 239.99989 * 2 1 3 31 31 H 1.09000 * 109.47209 * 119.99742 * 2 1 3 32 32 H 1.09003 * 109.47752 * 185.43419 * 6 5 3 33 33 H 1.09004 * 109.47227 * 305.43928 * 6 5 3 34 34 H 1.09002 * 109.47366 * 65.42978 * 6 5 3 35 35 H 0.97008 * 119.99708 * 359.97438 * 9 7 3 36 36 H 1.08994 * 109.46991 * 59.99221 * 10 9 7 37 37 H 1.09002 * 109.46345 * 299.99764 * 10 9 7 38 38 H 1.09004 * 109.98853 * 58.59962 * 13 11 10 39 39 H 1.09003 * 109.99090 * 297.23340 * 13 11 10 40 40 H 0.96992 * 120.00185 * 180.02562 * 18 17 15 41 41 H 1.09001 * 108.12231 * 211.11625 * 23 14 13 42 42 H 1.08999 * 108.12644 * 327.80758 * 23 14 13 43 43 H 1.08997 * 109.57353 * 79.27374 * 24 23 14 44 44 H 1.09000 * 109.57204 * 199.64429 * 24 23 14 45 45 H 1.08995 * 109.26035 * 82.42663 * 25 24 23 46 46 H 1.09004 * 109.25595 * 201.86946 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5721 1.9932 0.8161 5 16 1.6227 2.2314 -1.5792 6 6 2.0305 3.9742 -1.2852 7 6 3.5357 1.4465 0.1838 8 8 4.2642 1.5858 -0.7758 9 7 4.0639 1.2953 1.4144 10 6 5.5179 1.2998 1.5932 11 6 5.8502 1.1126 3.0748 12 1 5.4706 0.1417 3.3937 13 6 7.3109 1.1193 3.2325 14 7 7.5888 0.9853 4.7017 15 6 8.1561 -0.1556 5.2034 16 1 8.7200 -0.1186 6.1237 17 6 8.0061 -1.3597 4.5292 18 7 7.0727 -1.4875 3.6100 19 14 9.1289 -2.7987 4.9265 20 1 8.9745 -3.1668 6.3569 21 1 8.7663 -3.9594 4.0743 22 1 10.5388 -2.4136 4.6639 23 6 7.2492 2.0755 5.5696 24 6 5.8138 2.0596 6.1630 25 6 4.8206 1.6019 5.0618 26 8 5.1873 2.1277 3.8212 27 1 -0.3633 -1.0227 0.1009 28 1 -0.3635 0.5988 0.8351 29 1 -0.3633 0.4238 -0.9363 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.7270 4.5689 -2.1468 33 1 1.5045 4.3258 -0.3975 34 1 3.1053 4.0754 -1.1343 35 1 3.4812 1.1843 2.1820 36 1 5.9236 2.2505 1.2475 37 1 5.9573 0.4860 1.0163 38 1 7.7216 2.0576 2.8596 39 1 7.7479 0.2792 2.6926 40 1 6.9677 -2.3289 3.1391 41 1 7.9582 2.0834 6.3974 42 1 7.3722 3.0039 5.0120 43 1 5.7734 1.3655 7.0024 44 1 5.5475 3.0608 6.5016 45 1 4.8225 0.5134 5.0057 46 1 3.8182 1.9465 5.3162 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149541397.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:41 Heat of formation + Delta-G solvation = -74.647531 kcal Electronic energy + Delta-G solvation = -25847.719598 eV Core-core repulsion = 22284.892437 eV Total energy + Delta-G solvation = -3562.827161 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.13806 -40.26764 -36.80940 -35.97748 -35.71455 -33.82199 -32.91867 -30.52453 -29.95239 -28.92598 -27.07010 -26.77314 -24.29984 -23.04614 -22.41177 -21.49394 -21.26792 -18.99964 -18.38250 -17.87207 -17.62526 -16.74863 -16.58444 -16.36446 -16.13495 -15.82163 -15.71001 -15.49334 -14.90945 -14.71561 -14.57415 -14.31131 -14.20733 -13.99998 -13.61532 -13.55239 -13.25040 -13.15263 -12.99606 -12.92267 -12.61290 -12.51264 -12.31664 -12.15559 -11.95870 -11.94354 -11.78717 -11.39225 -11.20291 -11.06769 -10.88258 -10.56847 -10.28285 -10.10798 -8.71007 -8.61072 -7.89618 -5.32880 0.56180 1.41394 1.48011 1.51763 1.56406 1.61379 2.20663 2.51667 3.10007 3.28055 3.49110 3.61448 3.71024 3.94978 4.14458 4.26732 4.28172 4.30488 4.34608 4.36824 4.39740 4.47088 4.55967 4.72252 4.77356 4.78496 4.79096 4.85219 4.95637 5.07036 5.08525 5.14481 5.17940 5.18691 5.33730 5.37407 5.41243 5.42276 5.50688 5.66953 6.36490 6.48620 6.51387 7.10647 7.16619 7.82292 8.35341 9.15878 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.016950 B = 0.003557 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.542959 B = 7869.856546 C = 8478.139221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 C -0.072 4.072 4 H 0.132 0.868 5 S -0.231 6.231 6 C -0.122 4.122 7 C 0.504 3.496 8 O -0.565 6.565 9 N -0.701 5.701 10 C 0.135 3.865 11 C 0.082 3.918 12 H 0.086 0.914 13 C 0.144 3.856 14 N -0.602 5.602 15 C -0.266 4.266 16 H 0.063 0.937 17 C -0.034 4.034 18 N -0.918 5.918 19 Si 0.960 3.040 20 H -0.280 1.280 21 H -0.294 1.294 22 H -0.286 1.286 23 C 0.154 3.846 24 C -0.165 4.165 25 C 0.068 3.932 26 O -0.367 6.367 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.118 0.882 33 H 0.094 0.906 34 H 0.059 0.941 35 H 0.411 0.589 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.021 0.979 39 H 0.079 0.921 40 H 0.251 0.749 41 H 0.030 0.970 42 H 0.033 0.967 43 H 0.053 0.947 44 H 0.078 0.922 45 H 0.037 0.963 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.433 7.002 -3.339 16.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.137 4.137 3 C -0.204 4.204 4 H 0.149 0.851 5 S -0.004 6.004 6 C -0.291 4.291 7 C 0.287 3.713 8 O -0.444 6.444 9 N -0.352 5.352 10 C 0.010 3.990 11 C 0.023 3.977 12 H 0.103 0.897 13 C 0.020 3.980 14 N -0.323 5.323 15 C -0.396 4.396 16 H 0.080 0.920 17 C -0.230 4.230 18 N -0.564 5.564 19 Si 0.789 3.211 20 H -0.206 1.206 21 H -0.220 1.220 22 H -0.213 1.213 23 C 0.026 3.974 24 C -0.206 4.206 25 C -0.010 4.010 26 O -0.285 6.285 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.136 0.864 33 H 0.113 0.887 34 H 0.079 0.921 35 H 0.247 0.753 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.039 0.961 39 H 0.097 0.903 40 H 0.061 0.939 41 H 0.048 0.952 42 H 0.052 0.948 43 H 0.072 0.928 44 H 0.097 0.903 45 H 0.055 0.945 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.356 6.716 -5.099 16.650 hybrid contribution 1.386 -0.659 1.712 2.300 sum -12.970 6.057 -3.387 14.710 Atomic orbital electron populations 1.21780 0.92214 1.02989 1.03163 1.21321 0.98726 0.90340 1.03293 1.23634 0.93236 1.03361 1.00203 0.85053 1.86666 1.83304 1.07946 1.22476 1.23487 1.04316 0.93958 1.07328 1.21051 0.91463 0.76039 0.82738 1.90719 1.62684 1.50441 1.40557 1.45751 1.07742 1.72702 1.08977 1.21370 0.80719 1.00839 0.96118 1.21731 0.95321 0.91595 0.89044 0.89681 1.20668 0.93869 0.98258 0.85247 1.44189 1.70860 1.15453 1.01803 1.19387 1.25456 0.86343 1.08375 0.91972 1.25491 0.98710 0.98878 0.99938 1.69948 1.32310 1.25475 1.28661 0.85471 0.79057 0.79223 0.77366 1.20604 1.21973 1.21266 1.20488 0.93876 0.90006 0.93009 1.23493 0.97890 1.01006 0.98197 1.22407 0.97193 0.97253 0.84122 1.87501 1.75671 1.37533 1.27792 0.91182 0.91017 0.91904 0.92082 0.89564 0.86367 0.88669 0.92145 0.75317 0.92584 0.92154 0.96062 0.90299 0.93935 0.95170 0.94829 0.92773 0.90323 0.94503 0.89357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.67 71.98 0.70 -1.46 16 2 C -0.10 -1.96 5.36 30.59 0.16 -1.79 16 3 C -0.07 -1.62 2.57 29.85 0.08 -1.54 16 4 H 0.13 2.25 8.13 -2.39 -0.02 2.23 16 5 S -0.23 -5.49 20.06 -56.49 -1.13 -6.62 16 6 C -0.12 -2.37 10.65 113.37 1.21 -1.17 16 7 C 0.50 15.37 6.89 87.66 0.60 15.97 16 8 O -0.57 -21.93 16.04 -3.04 -0.05 -21.98 16 9 N -0.70 -21.08 5.40 -463.08 -2.50 -23.58 16 10 C 0.14 4.92 5.27 86.38 0.45 5.37 16 11 C 0.08 3.24 2.00 28.70 0.06 3.30 16 12 H 0.09 3.82 5.22 -2.38 -0.01 3.81 16 13 C 0.14 6.54 4.70 83.79 0.39 6.93 16 14 N -0.60 -28.54 2.61 -706.00 -1.84 -30.38 16 15 C -0.27 -13.78 9.63 84.03 0.81 -12.97 16 16 H 0.06 3.23 7.86 -2.91 -0.02 3.20 16 17 C -0.03 -1.74 4.98 84.86 0.42 -1.32 16 18 N -0.92 -47.88 9.45 21.65 0.20 -47.68 16 19 Si 0.96 42.72 29.59 68.60 2.03 44.75 16 20 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 22 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 23 C 0.15 6.26 5.33 87.75 0.47 6.73 16 24 C -0.16 -5.64 6.75 32.14 0.22 -5.42 16 25 C 0.07 2.29 6.38 72.73 0.46 2.76 16 26 O -0.37 -13.20 9.34 -137.19 -1.28 -14.48 16 27 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.07 0.88 8.13 -2.39 -0.02 0.86 16 29 H 0.06 1.01 7.44 -2.38 -0.02 0.99 16 30 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.09 1.65 8.13 -2.39 -0.02 1.63 16 32 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.41 10.60 8.19 -92.70 -0.76 9.84 16 36 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.08 4.00 6.02 -2.39 -0.01 3.99 16 40 H 0.25 13.00 8.31 -92.71 -0.77 12.23 16 41 H 0.03 1.22 7.97 -2.39 -0.02 1.20 16 42 H 0.03 1.33 7.98 -2.39 -0.02 1.31 16 43 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.04 1.46 6.66 -2.39 -0.02 1.44 16 46 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 Total: -1.00 -60.70 373.59 1.66 -59.04 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: 0.20 Total: 25.53 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: 6.03 Total: 15.39 kcal Atomic # 7 Polarization: -97.49 SS G_CDS: -4.14 Total: -101.63 kcal Atomic # 8 Polarization: -35.13 SS G_CDS: -1.33 Total: -36.46 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Atomic # 16 Polarization: -5.49 SS G_CDS: -1.13 Total: -6.62 kcal Total: -60.70 1.66 -59.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149541397.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.607 kcal (2) G-P(sol) polarization free energy of solvation -60.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds