Wall clock time and date at job start Tue Mar 31 2020 10:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46895 * 2 1 4 4 H 1.09004 * 109.47048 * 179.70416 * 3 2 1 5 5 C 1.50699 * 109.47187 * 59.70527 * 3 2 1 6 6 H 1.07995 * 120.00057 * 244.29621 * 5 3 2 7 7 C 1.37873 * 119.99998 * 64.29650 * 5 3 2 8 8 N 1.31516 * 119.99935 * 8.32900 * 7 5 3 9 9 Si 1.86802 * 120.00316 * 188.05028 * 7 5 3 10 10 H 1.48498 * 109.47165 * 90.00044 * 9 7 5 11 11 H 1.48494 * 109.47362 * 210.00302 * 9 7 5 12 12 H 1.48503 * 109.46988 * 330.00150 * 9 7 5 13 13 N 1.46497 * 109.47119 * 299.70332 * 3 2 1 14 14 C 1.38777 * 120.00151 * 274.16866 * 13 3 2 15 15 C 1.40156 * 119.23443 * 5.80469 * 14 13 3 16 16 C 1.36288 * 119.88734 * 179.97438 * 15 14 13 17 17 C 1.40926 * 118.32019 * 359.97438 * 16 15 14 18 18 C 1.40437 * 121.15126 * 180.02562 * 17 16 15 19 19 C 1.36437 * 119.67902 * 179.97438 * 18 17 16 20 20 O 1.35983 * 119.65906 * 180.02562 * 19 18 17 21 21 C 1.42902 * 117.00195 * 359.97438 * 20 19 18 22 22 C 1.40250 * 120.68043 * 359.97438 * 19 18 17 23 23 O 1.35894 * 119.56723 * 180.02562 * 22 19 18 24 24 C 1.42894 * 116.99929 * 179.97438 * 23 22 19 25 25 C 1.36502 * 120.86628 * 0.03902 * 22 19 18 26 26 C 1.40465 * 119.80709 * 359.96130 * 25 22 19 27 27 N 1.31722 * 119.23265 * 185.53558 * 14 13 3 28 28 H 1.09003 * 109.47158 * 63.50494 * 1 2 3 29 29 H 1.09000 * 109.46752 * 183.50197 * 1 2 3 30 30 H 1.08994 * 109.47387 * 303.50360 * 1 2 3 31 31 H 1.09000 * 109.47211 * 239.99860 * 2 1 3 32 32 H 1.09002 * 109.47135 * 119.99764 * 2 1 3 33 33 H 0.97001 * 120.00562 * 3.65022 * 8 7 5 34 34 H 0.97005 * 120.00058 * 94.17395 * 13 3 2 35 35 H 1.08000 * 120.05188 * 359.97012 * 15 14 13 36 36 H 1.07999 * 120.84070 * 179.97438 * 16 15 14 37 37 H 1.07999 * 120.16264 * 0.02562 * 18 17 16 38 38 H 1.09003 * 109.47170 * 299.99911 * 21 20 19 39 39 H 1.09003 * 109.47031 * 60.00439 * 21 20 19 40 40 H 1.09002 * 109.47163 * 179.97438 * 21 20 19 41 41 H 1.09004 * 109.47401 * 179.97438 * 24 23 22 42 42 H 1.08994 * 109.47845 * 300.00177 * 24 23 22 43 43 H 1.09004 * 109.47256 * 60.00342 * 24 23 22 44 44 H 1.08004 * 120.09529 * 179.97438 * 25 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4426 0.0053 5 6 1.5316 2.1550 1.2268 6 1 0.8553 2.9907 1.1245 7 6 1.9301 1.7400 2.4797 8 7 2.8757 0.8342 2.6026 9 14 1.1325 2.4700 4.0030 10 1 -0.0498 1.6550 4.3815 11 1 2.1101 2.4727 5.1207 12 1 0.7029 3.8626 3.7178 13 7 1.5575 2.1310 -1.1997 14 6 2.2695 2.0373 -2.3872 15 6 3.3785 1.1830 -2.4547 16 6 4.0870 1.0803 -3.6144 17 6 3.6726 1.8479 -4.7213 18 6 4.3589 1.7876 -5.9450 19 6 3.9313 2.5434 -6.9974 20 8 4.5958 2.4843 -8.1823 21 6 5.7267 1.6132 -8.2492 22 6 2.8128 3.3800 -6.8698 23 8 2.4063 4.1226 -7.9328 24 6 1.2606 4.9551 -7.7423 25 6 2.1274 3.4581 -5.6920 26 6 2.5430 2.6923 -4.5902 27 7 1.8840 2.7492 -3.4263 28 1 -0.3633 0.4585 -0.9198 29 1 -0.3633 -1.0258 0.0628 30 1 -0.3634 0.5672 0.8569 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.3296 0.4968 1.8145 34 1 0.7403 2.6525 -1.1640 35 1 3.6712 0.6072 -1.5892 36 1 4.9444 0.4272 -3.6835 37 1 5.2205 1.1454 -6.0529 38 1 6.4682 1.9232 -7.5128 39 1 5.4111 0.5912 -8.0391 40 1 6.1631 1.6604 -9.2469 41 1 1.0442 5.4924 -8.6657 42 1 0.4040 4.3380 -7.4715 43 1 1.4598 5.6704 -6.9443 44 1 1.2680 4.1068 -5.6075 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161053315.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:22 Heat of formation + Delta-G solvation = -37.582909 kcal Electronic energy + Delta-G solvation = -26066.080701 eV Core-core repulsion = 22369.416831 eV Total energy + Delta-G solvation = -3696.663870 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.10157 -40.62044 -39.52547 -38.53504 -36.31232 -34.28844 -34.15458 -32.57837 -30.64489 -30.25593 -28.42918 -28.09514 -27.38304 -25.87569 -24.32727 -23.76501 -22.87385 -21.70380 -19.88716 -19.49180 -18.99898 -18.52999 -17.26463 -17.10582 -17.05656 -16.71977 -16.17372 -15.80786 -15.68988 -15.54225 -15.41764 -15.24548 -14.90834 -14.69150 -14.43564 -13.98024 -13.91510 -13.43961 -13.30993 -13.26852 -12.94781 -12.66482 -12.46571 -12.39951 -12.22494 -12.16127 -12.12718 -11.95896 -11.77121 -11.63663 -11.28174 -10.74590 -10.49721 -10.36038 -9.83041 -9.16758 -8.62911 -8.19977 -6.35066 -0.49208 0.06074 1.05206 1.56594 1.62362 1.79906 1.96041 2.19115 2.32147 2.38730 2.59687 3.15573 3.19957 3.51220 3.75916 3.89514 3.92591 4.07939 4.24942 4.27045 4.32733 4.36857 4.37860 4.43984 4.46641 4.54956 4.56692 4.63254 4.71078 4.78651 4.82415 4.88962 4.94779 5.02308 5.11938 5.22253 5.30034 5.38235 5.43563 5.52135 5.62593 5.85110 5.97491 6.04061 6.36277 6.51534 6.55578 6.86975 7.27337 7.43383 8.75602 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.022425 B = 0.002923 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.313900 B = 9576.289308 C =10205.671901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.127 4.127 3 C 0.273 3.727 4 H 0.012 0.988 5 C -0.611 4.611 6 H 0.050 0.950 7 C -0.011 4.011 8 N -0.925 5.925 9 Si 1.110 2.890 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.692 5.692 14 C 0.418 3.582 15 C -0.235 4.235 16 C -0.013 4.013 17 C -0.167 4.167 18 C -0.131 4.131 19 C 0.074 3.926 20 O -0.326 6.326 21 C 0.015 3.985 22 C 0.145 3.855 23 O -0.318 6.318 24 C 0.016 3.984 25 C -0.203 4.203 26 C 0.176 3.824 27 N -0.589 5.589 28 H 0.042 0.958 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.041 0.959 32 H 0.051 0.949 33 H 0.263 0.737 34 H 0.396 0.604 35 H 0.131 0.869 36 H 0.173 0.827 37 H 0.171 0.829 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.120 0.880 41 H 0.127 0.873 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.886 1.123 -20.115 20.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.029 0.971 5 C -0.649 4.649 6 H 0.068 0.932 7 C -0.212 4.212 8 N -0.561 5.561 9 Si 0.933 3.067 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.320 5.320 14 C 0.170 3.830 15 C -0.258 4.258 16 C -0.037 4.037 17 C -0.171 4.171 18 C -0.150 4.150 19 C 0.028 3.972 20 O -0.240 6.240 21 C -0.079 4.079 22 C 0.097 3.903 23 O -0.231 6.231 24 C -0.078 4.078 25 C -0.224 4.224 26 C 0.052 3.948 27 N -0.313 5.313 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.230 0.770 35 H 0.149 0.851 36 H 0.191 0.809 37 H 0.189 0.811 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.138 0.862 41 H 0.146 0.854 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.284 1.595 -18.654 18.861 hybrid contribution 0.279 -0.257 -1.022 1.090 sum 2.563 1.338 -19.677 19.888 Atomic orbital electron populations 1.21439 0.95387 1.00129 1.00939 1.21874 0.97396 0.98065 0.99295 1.18644 0.93219 0.89548 0.81727 0.97060 1.22182 1.31892 1.18360 0.92492 0.93202 1.26869 0.95385 0.95198 1.03705 1.70877 1.22406 1.29273 1.33590 0.82996 0.75555 0.75745 0.72426 1.19838 1.21220 1.20230 1.45008 1.26853 1.53531 1.06637 1.18904 0.88812 0.88720 0.86603 1.21484 0.98978 1.04333 1.01008 1.21491 0.97567 0.94850 0.89829 1.18508 0.99402 1.03035 0.96203 1.20946 1.02072 1.01476 0.90502 1.17935 0.93491 0.98524 0.87253 1.86128 1.43715 1.64325 1.29821 1.23394 0.85994 0.93309 1.05245 1.18067 0.92750 0.92402 0.87070 1.86126 1.47569 1.55309 1.34054 1.23393 0.85749 0.93483 1.05178 1.20460 1.04550 1.06369 0.90986 1.18439 0.91394 0.94111 0.90901 1.67531 1.35226 1.28446 1.00049 0.93930 0.93266 0.93123 0.94006 0.93029 0.92603 0.76985 0.85115 0.80949 0.81145 0.91590 0.91509 0.86205 0.85441 0.91965 0.92086 0.83391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.86 9.52 71.98 0.69 -4.18 16 2 C -0.13 -5.52 5.39 30.59 0.16 -5.36 16 3 C 0.27 12.76 1.55 44.25 0.07 12.83 16 4 H 0.01 0.59 5.98 -2.39 -0.01 0.58 16 5 C -0.61 -31.58 7.34 25.60 0.19 -31.39 16 6 H 0.05 2.60 7.74 -2.91 -0.02 2.58 16 7 C -0.01 -0.57 5.22 84.65 0.44 -0.13 16 8 N -0.93 -51.69 12.87 21.45 0.28 -51.41 16 9 Si 1.11 47.56 29.91 68.60 2.05 49.61 16 10 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 11 H -0.29 -12.33 7.11 99.48 0.71 -11.63 16 12 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 13 N -0.69 -29.77 4.53 -327.92 -1.49 -31.26 16 14 C 0.42 17.02 7.61 133.59 1.02 18.04 16 15 C -0.23 -8.46 8.62 22.28 0.19 -8.26 16 16 C -0.01 -0.36 9.87 22.47 0.22 -0.14 16 17 C -0.17 -5.09 5.75 -21.24 -0.12 -5.21 16 18 C -0.13 -3.16 8.74 22.38 0.20 -2.96 16 19 C 0.07 1.94 6.67 22.34 0.15 2.09 16 20 O -0.33 -7.57 10.25 -79.06 -0.81 -8.38 16 21 C 0.01 0.19 9.80 113.37 1.11 1.30 16 22 C 0.15 4.10 6.66 22.35 0.15 4.25 16 23 O -0.32 -8.08 10.25 -78.06 -0.80 -8.88 16 24 C 0.02 0.28 9.80 113.37 1.11 1.39 16 25 C -0.20 -6.21 8.94 22.41 0.20 -6.01 16 26 C 0.18 6.20 6.60 40.22 0.27 6.47 16 27 N -0.59 -23.53 10.37 -186.19 -1.93 -25.46 16 28 H 0.04 1.62 7.72 -2.39 -0.02 1.61 16 29 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.05 2.18 7.08 -2.39 -0.02 2.16 16 31 H 0.04 1.68 7.24 -2.39 -0.02 1.66 16 32 H 0.05 2.46 6.34 -2.39 -0.02 2.45 16 33 H 0.26 14.69 6.15 -92.71 -0.57 14.12 16 34 H 0.40 16.96 8.66 -92.70 -0.80 16.16 16 35 H 0.13 4.80 5.77 -2.91 -0.02 4.79 16 36 H 0.17 3.45 8.06 -2.91 -0.02 3.43 16 37 H 0.17 2.78 6.19 -2.91 -0.02 2.77 16 38 H 0.07 0.72 7.64 -2.39 -0.02 0.70 16 39 H 0.07 0.71 7.63 -2.39 -0.02 0.69 16 40 H 0.12 1.01 8.14 -2.39 -0.02 1.00 16 41 H 0.13 1.42 8.14 -2.38 -0.02 1.41 16 42 H 0.06 1.02 7.63 -2.39 -0.02 1.00 16 43 H 0.06 1.01 7.63 -2.39 -0.02 0.99 16 44 H 0.15 4.16 6.17 -2.91 -0.02 4.14 16 Total: -1.00 -65.45 355.64 3.77 -61.68 By element: Atomic # 1 Polarization: 30.94 SS G_CDS: 0.44 Total: 31.38 kcal Atomic # 6 Polarization: -23.31 SS G_CDS: 6.04 Total: -17.27 kcal Atomic # 7 Polarization: -104.99 SS G_CDS: -3.14 Total: -108.13 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -1.61 Total: -17.27 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.05 Total: 49.61 kcal Total: -65.45 3.77 -61.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161053315.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.093 kcal (2) G-P(sol) polarization free energy of solvation -65.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds