Wall clock time and date at job start Tue Mar 31 2020 11:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 H 1.08998 * 109.46845 * 305.55830 * 3 2 1 5 5 C 1.50694 * 109.47214 * 185.55739 * 3 2 1 6 6 H 1.08004 * 119.99742 * 245.60300 * 5 3 2 7 7 C 1.37879 * 120.00562 * 65.60651 * 5 3 2 8 8 N 1.31505 * 120.00295 * 196.28743 * 7 5 3 9 9 Si 1.86803 * 119.99620 * 16.28391 * 7 5 3 10 10 H 1.48499 * 109.46999 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47178 * 300.00153 * 9 7 5 12 12 H 1.48500 * 109.47146 * 59.99948 * 9 7 5 13 13 N 1.46499 * 109.46998 * 65.55420 * 3 2 1 14 14 C 1.34774 * 120.00201 * 275.00234 * 13 3 2 15 15 O 1.21279 * 120.00154 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00213 * 179.97438 * 14 13 3 17 17 C 1.53004 * 109.47380 * 179.97438 * 16 14 13 18 18 N 1.46496 * 109.46893 * 180.02562 * 17 16 14 19 19 C 1.46738 * 125.62112 * 90.00706 * 18 17 16 20 20 C 1.50830 * 106.25179 * 179.97438 * 19 18 17 21 21 C 1.37574 * 133.24489 * 179.97438 * 20 19 18 22 22 C 1.38475 * 119.95891 * 180.02562 * 21 20 19 23 23 C 1.38380 * 120.18883 * 0.02562 * 22 21 20 24 24 C 1.37940 * 120.32036 * 359.97438 * 23 22 21 25 25 C 1.39626 * 119.82818 * 359.97438 * 24 23 22 26 26 C 1.34419 * 125.62675 * 269.68956 * 18 17 16 27 27 O 1.21554 * 124.85715 * 359.97438 * 26 18 17 28 28 H 1.09008 * 109.47032 * 299.99427 * 1 2 3 29 29 H 1.09000 * 109.47548 * 59.99665 * 1 2 3 30 30 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47032 * 240.00572 * 2 1 3 32 32 H 1.09000 * 109.47548 * 120.00335 * 2 1 3 33 33 H 0.96998 * 120.00193 * 354.82844 * 8 7 5 34 34 H 0.97002 * 119.99591 * 94.99944 * 13 3 2 35 35 H 1.08999 * 109.47228 * 300.00351 * 16 14 13 36 36 H 1.09004 * 109.46893 * 60.00119 * 16 14 13 37 37 H 1.08999 * 109.47279 * 300.00383 * 17 16 14 38 38 H 1.08998 * 109.46537 * 60.00164 * 17 16 14 39 39 H 1.08998 * 110.09768 * 299.16893 * 19 18 17 40 40 H 1.08995 * 110.09832 * 60.78025 * 19 18 17 41 41 H 1.08000 * 120.01917 * 0.02562 * 21 20 19 42 42 H 1.07995 * 119.90320 * 180.02562 * 22 21 20 43 43 H 1.08000 * 119.84575 * 179.97438 * 23 22 21 44 44 H 1.08001 * 120.08840 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4447 -0.1376 6 1 4.1567 1.8042 0.6734 7 6 4.1272 0.9880 -1.2988 8 7 5.4071 0.6861 -1.3143 9 14 3.1039 0.7979 -2.8499 10 1 3.9631 0.2936 -3.9511 11 1 2.0022 -0.1664 -2.6011 12 1 2.5325 2.1147 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4477 2.6599 1.3855 15 8 -0.3356 2.6305 0.4601 16 6 0.0606 3.3290 2.6792 17 6 -1.3593 3.8864 2.5602 18 7 -1.7353 4.5373 3.8176 19 6 -1.5155 5.9501 4.1477 20 6 -2.0655 6.1492 5.5379 21 6 -2.1458 7.2400 6.3725 22 6 -2.7204 7.1110 7.6258 23 6 -3.2140 5.8871 8.0423 24 6 -3.1384 4.7871 7.2135 25 6 -2.5615 4.9095 5.9479 26 6 -2.3440 3.9404 4.8569 27 8 -2.6676 2.7693 4.8932 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 5.9548 0.8552 -0.5318 34 1 2.2902 2.1166 1.9978 35 1 0.0991 2.6017 3.4901 36 1 0.7539 4.1436 2.8885 37 1 -1.3974 4.6138 1.7493 38 1 -2.0528 3.0720 2.3506 39 1 -0.4496 6.1773 4.1304 40 1 -2.0463 6.5870 3.4402 41 1 -1.7611 8.1963 6.0503 42 1 -2.7834 7.9679 8.2800 43 1 -3.6605 5.7927 9.0211 44 1 -3.5252 3.8339 7.5422 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178833996.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:53 Heat of formation + Delta-G solvation = -38.391585 kcal Electronic energy + Delta-G solvation = -25672.701234 eV Core-core repulsion = 21976.002298 eV Total energy + Delta-G solvation = -3696.698937 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.40138 -39.32287 -38.36893 -36.42520 -35.34175 -33.21206 -32.43950 -31.51863 -31.45956 -29.86061 -27.31144 -27.01351 -25.18871 -22.73571 -22.22975 -22.04632 -20.55194 -19.94733 -19.52778 -17.86844 -17.28740 -17.07295 -16.55561 -16.12293 -15.69101 -15.52338 -15.16114 -14.77106 -14.50617 -14.10236 -13.69317 -13.58632 -13.50226 -13.32978 -13.29661 -12.88401 -12.51371 -12.46436 -12.28021 -12.17288 -12.10547 -11.70864 -11.47925 -11.12343 -10.87496 -10.67891 -10.43624 -10.07706 -9.89562 -9.59960 -9.51604 -9.36262 -9.22983 -9.05178 -8.88257 -8.35291 -8.09854 -6.59198 -4.23319 0.41790 0.86809 2.50760 2.55627 3.20872 3.38384 3.43431 3.45731 3.58684 3.72407 4.03819 4.09216 4.40891 4.45819 4.56779 4.85263 4.86792 4.89718 5.00706 5.05708 5.06270 5.15457 5.28459 5.32227 5.50986 5.54657 5.69660 5.81037 5.86758 5.91912 5.97127 6.09586 6.12337 6.29792 6.35228 6.39522 6.70342 6.79389 6.81581 6.96208 7.06383 7.36370 7.39942 7.64498 7.93414 8.21751 8.45225 8.68807 8.95605 9.45903 10.81422 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.028658 B = 0.002498 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.799413 B =11206.279862 C =11534.081649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.140 4.140 3 C 0.247 3.753 4 H 0.042 0.958 5 C -0.617 4.617 6 H 0.061 0.939 7 C 0.038 3.962 8 N -0.899 5.899 9 Si 1.041 2.959 10 H -0.284 1.284 11 H -0.268 1.268 12 H -0.280 1.280 13 N -0.700 5.700 14 C 0.507 3.493 15 O -0.553 6.553 16 C -0.161 4.161 17 C 0.154 3.846 18 N -0.613 5.613 19 C 0.138 3.862 20 C -0.082 4.082 21 C -0.104 4.104 22 C -0.090 4.090 23 C -0.129 4.129 24 C -0.047 4.047 25 C -0.155 4.155 26 C 0.555 3.445 27 O -0.521 6.521 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.030 0.970 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.268 0.732 34 H 0.393 0.607 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.132 0.868 42 H 0.132 0.868 43 H 0.132 0.868 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.289 14.656 17.289 27.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.178 4.178 3 C 0.143 3.857 4 H 0.060 0.940 5 C -0.655 4.655 6 H 0.079 0.921 7 C -0.168 4.168 8 N -0.532 5.532 9 Si 0.869 3.131 10 H -0.210 1.210 11 H -0.195 1.195 12 H -0.206 1.206 13 N -0.348 5.348 14 C 0.291 3.709 15 O -0.432 6.432 16 C -0.203 4.203 17 C 0.033 3.967 18 N -0.346 5.346 19 C 0.015 3.985 20 C -0.083 4.083 21 C -0.122 4.122 22 C -0.108 4.108 23 C -0.147 4.147 24 C -0.066 4.066 25 C -0.158 4.158 26 C 0.344 3.656 27 O -0.398 6.398 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.226 0.774 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.150 0.850 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -15.877 13.407 14.918 25.580 hybrid contribution 0.484 0.627 2.147 2.288 sum -15.393 14.034 17.065 26.928 Atomic orbital electron populations 1.21880 0.97308 0.98938 1.01934 1.22364 0.93867 0.99783 1.01831 1.19054 0.95753 0.88594 0.82266 0.94049 1.22095 0.89744 1.49532 1.04098 0.92126 1.25689 0.97545 0.92338 1.01236 1.70874 1.07086 1.40907 1.34302 0.84106 0.75499 0.77716 0.75826 1.20951 1.19463 1.20626 1.46260 1.14583 1.55794 1.18114 1.20179 0.82717 0.79276 0.88722 1.90671 1.50805 1.60336 1.41432 1.22055 0.98304 1.01905 0.98019 1.21131 0.95103 0.98338 0.82134 1.48022 1.59597 1.10151 1.16804 1.20519 1.01999 0.83126 0.92861 1.20512 0.97806 0.94216 0.95781 1.20321 1.00623 0.97699 0.93559 1.21334 0.96176 0.97796 0.95519 1.21148 1.00856 0.92561 1.00115 1.20905 0.95104 0.99355 0.91258 1.20494 1.03813 0.95415 0.96114 1.18316 0.77716 0.86886 0.82726 1.90805 1.51918 1.16087 1.80993 0.93272 0.93024 0.95075 0.91309 0.93123 0.92134 0.77439 0.88972 0.89104 0.88867 0.88575 0.88413 0.88400 0.85037 0.84987 0.85005 0.85002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.53 37.15 0.32 -2.65 16 2 C -0.14 -3.16 5.28 -26.73 -0.14 -3.30 16 3 C 0.25 5.85 1.82 -69.08 -0.13 5.72 16 4 H 0.04 1.06 6.26 -51.93 -0.32 0.74 16 5 C -0.62 -16.57 9.01 -34.44 -0.31 -16.88 16 6 H 0.06 1.70 7.96 -52.48 -0.42 1.28 16 7 C 0.04 1.08 5.32 -17.82 -0.09 0.98 16 8 N -0.90 -26.71 13.69 55.43 0.76 -25.96 16 9 Si 1.04 25.05 26.27 -169.99 -4.47 20.59 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.07 5.67 56.52 0.32 -5.75 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.70 -13.84 5.03 -54.94 -0.28 -14.12 16 14 C 0.51 9.17 6.42 -10.99 -0.07 9.10 16 15 O -0.55 -11.55 13.12 5.56 0.07 -11.48 16 16 C -0.16 -2.17 6.02 -27.88 -0.17 -2.34 16 17 C 0.15 1.97 5.35 -4.04 -0.02 1.95 16 18 N -0.61 -7.10 2.97 -176.14 -0.52 -7.62 16 19 C 0.14 1.09 7.38 -5.00 -0.04 1.05 16 20 C -0.08 -0.69 6.38 -104.26 -0.66 -1.35 16 21 C -0.10 -0.64 10.03 -39.74 -0.40 -1.04 16 22 C -0.09 -0.51 10.05 -39.44 -0.40 -0.90 16 23 C -0.13 -0.84 10.02 -39.64 -0.40 -1.24 16 24 C -0.05 -0.43 10.10 -39.17 -0.40 -0.82 16 25 C -0.16 -1.69 6.26 -105.05 -0.66 -2.35 16 26 C 0.56 7.67 7.97 -12.63 -0.10 7.57 16 27 O -0.52 -9.19 17.71 5.32 0.09 -9.10 16 28 H 0.05 1.01 5.63 -51.92 -0.29 0.72 16 29 H 0.05 1.10 7.88 -51.93 -0.41 0.69 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 1.62 4.74 -51.92 -0.25 1.38 16 32 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.27 7.90 8.73 -40.82 -0.36 7.54 16 34 H 0.39 6.99 8.53 -40.82 -0.35 6.65 16 35 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.09 1.09 8.10 -51.93 -0.42 0.67 16 38 H 0.10 1.44 7.96 -51.93 -0.41 1.03 16 39 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 42 H 0.13 0.39 8.06 -52.49 -0.42 -0.03 16 43 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 44 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 361.46 15.07 5.45 5.45 Total: -1.00 -33.98 361.46 -8.89 -42.87 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -6.33 Total: 5.87 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -3.66 Total: -6.50 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: -0.04 Total: -47.70 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: 0.17 Total: -20.58 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -4.47 Total: 20.59 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.98 -8.89 -42.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178833996.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.480 kcal (2) G-P(sol) polarization free energy of solvation -33.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds