Wall clock time and date at job start Tue Mar 31 2020 11:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 H 1.08998 * 109.46845 * 305.55830 * 3 2 1 5 5 C 1.50694 * 109.47214 * 185.55739 * 3 2 1 6 6 H 1.08004 * 119.99742 * 245.60300 * 5 3 2 7 7 C 1.37879 * 120.00562 * 65.60651 * 5 3 2 8 8 N 1.31505 * 120.00295 * 196.28743 * 7 5 3 9 9 Si 1.86803 * 119.99620 * 16.28391 * 7 5 3 10 10 H 1.48499 * 109.46999 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47178 * 300.00153 * 9 7 5 12 12 H 1.48500 * 109.47146 * 59.99948 * 9 7 5 13 13 N 1.46499 * 109.46998 * 65.55420 * 3 2 1 14 14 C 1.34774 * 120.00201 * 275.00234 * 13 3 2 15 15 O 1.21279 * 120.00154 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00213 * 179.97438 * 14 13 3 17 17 C 1.53004 * 109.47380 * 179.97438 * 16 14 13 18 18 N 1.46496 * 109.46893 * 180.02562 * 17 16 14 19 19 C 1.46738 * 125.62112 * 90.00706 * 18 17 16 20 20 C 1.50830 * 106.25179 * 179.97438 * 19 18 17 21 21 C 1.37574 * 133.24489 * 179.97438 * 20 19 18 22 22 C 1.38475 * 119.95891 * 180.02562 * 21 20 19 23 23 C 1.38380 * 120.18883 * 0.02562 * 22 21 20 24 24 C 1.37940 * 120.32036 * 359.97438 * 23 22 21 25 25 C 1.39626 * 119.82818 * 359.97438 * 24 23 22 26 26 C 1.34419 * 125.62675 * 269.68956 * 18 17 16 27 27 O 1.21554 * 124.85715 * 359.97438 * 26 18 17 28 28 H 1.09008 * 109.47032 * 299.99427 * 1 2 3 29 29 H 1.09000 * 109.47548 * 59.99665 * 1 2 3 30 30 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47032 * 240.00572 * 2 1 3 32 32 H 1.09000 * 109.47548 * 120.00335 * 2 1 3 33 33 H 0.96998 * 120.00193 * 354.82844 * 8 7 5 34 34 H 0.97002 * 119.99591 * 94.99944 * 13 3 2 35 35 H 1.08999 * 109.47228 * 300.00351 * 16 14 13 36 36 H 1.09004 * 109.46893 * 60.00119 * 16 14 13 37 37 H 1.08999 * 109.47279 * 300.00383 * 17 16 14 38 38 H 1.08998 * 109.46537 * 60.00164 * 17 16 14 39 39 H 1.08998 * 110.09768 * 299.16893 * 19 18 17 40 40 H 1.08995 * 110.09832 * 60.78025 * 19 18 17 41 41 H 1.08000 * 120.01917 * 0.02562 * 21 20 19 42 42 H 1.07995 * 119.90320 * 180.02562 * 22 21 20 43 43 H 1.08000 * 119.84575 * 179.97438 * 23 22 21 44 44 H 1.08001 * 120.08840 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4447 -0.1376 6 1 4.1567 1.8042 0.6734 7 6 4.1272 0.9880 -1.2988 8 7 5.4071 0.6861 -1.3143 9 14 3.1039 0.7979 -2.8499 10 1 3.9631 0.2936 -3.9511 11 1 2.0022 -0.1664 -2.6011 12 1 2.5325 2.1147 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4477 2.6599 1.3855 15 8 -0.3356 2.6305 0.4601 16 6 0.0606 3.3290 2.6792 17 6 -1.3593 3.8864 2.5602 18 7 -1.7353 4.5373 3.8176 19 6 -1.5155 5.9501 4.1477 20 6 -2.0655 6.1492 5.5379 21 6 -2.1458 7.2400 6.3725 22 6 -2.7204 7.1110 7.6258 23 6 -3.2140 5.8871 8.0423 24 6 -3.1384 4.7871 7.2135 25 6 -2.5615 4.9095 5.9479 26 6 -2.3440 3.9404 4.8569 27 8 -2.6676 2.7693 4.8932 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 5.9548 0.8552 -0.5318 34 1 2.2902 2.1166 1.9978 35 1 0.0991 2.6017 3.4901 36 1 0.7539 4.1436 2.8885 37 1 -1.3974 4.6138 1.7493 38 1 -2.0528 3.0720 2.3506 39 1 -0.4496 6.1773 4.1304 40 1 -2.0463 6.5870 3.4402 41 1 -1.7611 8.1963 6.0503 42 1 -2.7834 7.9679 8.2800 43 1 -3.6605 5.7927 9.0211 44 1 -3.5252 3.8339 7.5422 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178833996.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:52 Heat of formation + Delta-G solvation = -61.203810 kcal Electronic energy + Delta-G solvation = -25673.690447 eV Core-core repulsion = 21976.002298 eV Total energy + Delta-G solvation = -3697.688149 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.19095 -40.83208 -39.15918 -37.49282 -37.00970 -34.47637 -34.21091 -33.09770 -32.06231 -30.83652 -29.11401 -27.72715 -26.24640 -24.29311 -23.42889 -22.63694 -22.08856 -21.21640 -20.86432 -19.80144 -18.26167 -18.04814 -17.49898 -17.32952 -16.89734 -16.60400 -16.51940 -15.68802 -15.54715 -15.18499 -14.99004 -14.84669 -14.60487 -14.48056 -14.43695 -14.24121 -14.03912 -13.76983 -13.69761 -13.44815 -13.09133 -12.75395 -12.71390 -12.50660 -12.34587 -12.21756 -11.99676 -11.79521 -11.41892 -11.12628 -11.05631 -10.78942 -10.49230 -10.22324 -9.92227 -9.81143 -9.66813 -8.80322 -6.45329 -0.22990 0.34492 1.45605 1.49510 1.60617 1.69276 1.72284 1.74682 2.41074 2.57339 2.82148 3.00186 3.08666 3.39877 3.75952 3.90936 3.92557 4.01145 4.18590 4.29639 4.35144 4.38286 4.40474 4.45293 4.49189 4.52045 4.55267 4.62533 4.80285 4.82907 4.85797 5.00727 5.08198 5.15298 5.19109 5.28408 5.38167 5.46203 5.52447 5.54750 5.64805 5.67740 5.86840 5.93160 5.99942 6.52064 6.82851 6.96037 7.27875 7.42812 8.59113 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.028658 B = 0.002498 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.799413 B =11206.279862 C =11534.081649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.138 4.138 3 C 0.252 3.748 4 H 0.026 0.974 5 C -0.612 4.612 6 H 0.039 0.961 7 C -0.006 4.006 8 N -0.929 5.929 9 Si 1.071 2.929 10 H -0.284 1.284 11 H -0.246 1.246 12 H -0.270 1.270 13 N -0.704 5.704 14 C 0.507 3.493 15 O -0.579 6.579 16 C -0.145 4.145 17 C 0.159 3.841 18 N -0.610 5.610 19 C 0.133 3.867 20 C -0.080 4.080 21 C -0.101 4.101 22 C -0.079 4.079 23 C -0.129 4.129 24 C -0.066 4.066 25 C -0.193 4.193 26 C 0.541 3.459 27 O -0.580 6.580 28 H 0.045 0.955 29 H 0.043 0.957 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.257 0.743 34 H 0.402 0.598 35 H 0.091 0.909 36 H 0.122 0.878 37 H 0.109 0.891 38 H 0.067 0.933 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.165 0.835 42 H 0.168 0.832 43 H 0.157 0.843 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.445 17.475 18.528 30.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.176 4.176 3 C 0.147 3.853 4 H 0.044 0.956 5 C -0.650 4.650 6 H 0.058 0.942 7 C -0.207 4.207 8 N -0.564 5.564 9 Si 0.894 3.106 10 H -0.210 1.210 11 H -0.171 1.171 12 H -0.196 1.196 13 N -0.353 5.353 14 C 0.294 3.706 15 O -0.460 6.460 16 C -0.186 4.186 17 C 0.037 3.963 18 N -0.341 5.341 19 C 0.012 3.988 20 C -0.081 4.081 21 C -0.119 4.119 22 C -0.097 4.097 23 C -0.146 4.146 24 C -0.085 4.085 25 C -0.196 4.196 26 C 0.332 3.668 27 O -0.461 6.461 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.236 0.764 35 H 0.109 0.891 36 H 0.140 0.860 37 H 0.127 0.873 38 H 0.085 0.915 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.182 0.818 42 H 0.185 0.815 43 H 0.174 0.826 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -17.034 16.278 16.192 28.589 hybrid contribution 0.834 -0.132 1.892 2.072 sum -16.199 16.146 18.084 29.158 Atomic orbital electron populations 1.21760 0.95615 1.00248 1.01407 1.22276 0.95273 0.98702 1.01390 1.18739 0.93423 0.89521 0.83642 0.95587 1.22282 0.91524 1.48050 1.03135 0.94237 1.26828 0.97712 0.92080 1.04055 1.70977 1.08089 1.43340 1.34016 0.83717 0.75090 0.78755 0.73051 1.20956 1.17098 1.19587 1.46126 1.15726 1.56232 1.17188 1.20839 0.81513 0.78378 0.89877 1.90657 1.51330 1.61089 1.42896 1.21946 0.99297 1.02384 0.94927 1.20953 0.93885 0.98135 0.83306 1.48062 1.58543 1.11755 1.15716 1.20848 1.03789 0.80874 0.93303 1.20687 0.97544 0.93831 0.96080 1.20743 0.99748 0.98156 0.93225 1.21827 0.93982 0.98284 0.95613 1.21467 1.00422 0.92113 1.00635 1.21056 0.95768 1.00225 0.91431 1.20416 1.06948 0.95805 0.96414 1.18966 0.77179 0.86714 0.83947 1.90749 1.54614 1.18533 1.82251 0.93564 0.93753 0.92843 0.92235 0.93095 0.93317 0.76355 0.89082 0.85960 0.87327 0.91471 0.86044 0.86014 0.81781 0.81471 0.82585 0.85998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.34 8.53 71.98 0.61 -4.72 16 2 C -0.14 -6.12 5.28 30.59 0.16 -5.95 16 3 C 0.25 11.83 1.82 44.24 0.08 11.91 16 4 H 0.03 1.33 6.26 -2.39 -0.01 1.31 16 5 C -0.61 -33.15 9.01 25.60 0.23 -32.92 16 6 H 0.04 2.26 7.96 -2.91 -0.02 2.24 16 7 C -0.01 -0.35 5.32 84.66 0.45 0.10 16 8 N -0.93 -56.22 13.69 21.45 0.29 -55.92 16 9 Si 1.07 50.20 26.27 68.60 1.80 52.01 16 10 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 11 H -0.25 -10.59 5.67 99.48 0.56 -10.03 16 12 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 13 N -0.70 -27.42 5.03 -446.11 -2.24 -29.66 16 14 C 0.51 17.91 6.42 87.66 0.56 18.47 16 15 O -0.58 -23.82 13.12 -3.03 -0.04 -23.86 16 16 C -0.14 -3.70 6.02 29.85 0.18 -3.52 16 17 C 0.16 3.96 5.35 86.38 0.46 4.42 16 18 N -0.61 -13.62 2.97 -829.66 -2.46 -16.08 16 19 C 0.13 1.73 7.38 85.63 0.63 2.37 16 20 C -0.08 -1.15 6.38 -19.63 -0.13 -1.27 16 21 C -0.10 -0.83 10.03 22.17 0.22 -0.61 16 22 C -0.08 -0.56 10.05 22.36 0.22 -0.33 16 23 C -0.13 -1.36 10.02 22.23 0.22 -1.14 16 24 C -0.07 -1.18 10.10 22.53 0.23 -0.95 16 25 C -0.19 -4.15 6.26 -20.14 -0.13 -4.28 16 26 C 0.54 15.42 7.97 86.75 0.69 16.12 16 27 O -0.58 -21.90 17.71 -3.89 -0.07 -21.96 16 28 H 0.05 1.86 5.63 -2.38 -0.01 1.85 16 29 H 0.04 1.83 7.88 -2.39 -0.02 1.81 16 30 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.06 2.74 4.74 -2.38 -0.01 2.73 16 32 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.26 15.61 8.73 -92.71 -0.81 14.80 16 34 H 0.40 14.08 8.53 -92.71 -0.79 13.29 16 35 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.12 2.39 8.14 -2.39 -0.02 2.38 16 37 H 0.11 2.36 8.10 -2.39 -0.02 2.34 16 38 H 0.07 2.08 7.96 -2.39 -0.02 2.06 16 39 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.16 0.30 8.06 -2.91 -0.02 0.27 16 42 H 0.17 0.04 8.06 -2.91 -0.02 0.01 16 43 H 0.16 0.81 8.06 -2.91 -0.02 0.78 16 44 H 0.12 2.27 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -77.20 361.46 2.04 -75.16 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: 0.05 Total: 22.64 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: 4.71 Total: -2.31 kcal Atomic # 7 Polarization: -97.25 SS G_CDS: -4.41 Total: -101.66 kcal Atomic # 8 Polarization: -45.72 SS G_CDS: -0.11 Total: -45.83 kcal Atomic # 14 Polarization: 50.20 SS G_CDS: 1.80 Total: 52.01 kcal Total: -77.20 2.04 -75.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178833996.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.958 kcal (2) G-P(sol) polarization free energy of solvation -77.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds