Wall clock time and date at job start Tue Mar 31 2020 11:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53009 * 109.46755 * 2 1 4 4 H 1.08997 * 109.46852 * 304.99415 * 3 2 1 5 5 C 1.50702 * 109.46681 * 184.99993 * 3 2 1 6 6 H 1.08000 * 119.99813 * 239.99994 * 5 3 2 7 7 C 1.37874 * 120.00425 * 59.99887 * 5 3 2 8 8 N 1.31520 * 119.99836 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00282 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47093 * 60.00152 * 9 7 5 11 11 H 1.48499 * 109.47086 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47194 * 299.99875 * 9 7 5 13 13 N 1.46495 * 109.47162 * 65.00236 * 3 2 1 14 14 C 1.34783 * 119.99780 * 274.99740 * 13 3 2 15 15 O 1.21280 * 119.99833 * 359.97438 * 14 13 3 16 16 C 1.50698 * 119.99914 * 180.02562 * 14 13 3 17 17 H 1.09006 * 110.21783 * 34.62438 * 16 14 13 18 18 C 1.54474 * 110.24704 * 272.69261 * 16 14 13 19 19 C 1.54631 * 101.76665 * 215.58322 * 18 16 14 20 20 C 1.51287 * 104.19193 * 24.80028 * 19 18 16 21 21 O 1.21283 * 124.93867 * 163.77091 * 20 19 18 22 22 N 1.34560 * 110.13888 * 343.67561 * 20 19 18 23 23 C 1.39922 * 124.42954 * 179.64728 * 22 20 19 24 24 C 1.38878 * 120.07223 * 294.72501 * 23 22 20 25 25 C 1.38113 * 119.92813 * 179.67602 * 24 23 22 26 26 C 1.38279 * 120.07276 * 0.62813 * 25 24 23 27 27 C 1.38286 * 120.13827 * 359.66993 * 26 25 24 28 28 C 1.38106 * 120.07340 * 0.02562 * 27 26 25 29 29 H 1.09001 * 109.47401 * 300.00165 * 1 2 3 30 30 H 1.09005 * 109.47348 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47084 * 60.00100 * 1 2 3 32 32 H 1.08999 * 109.47084 * 119.99900 * 2 1 3 33 33 H 1.09001 * 109.47401 * 239.99835 * 2 1 3 34 34 H 0.96994 * 120.00233 * 179.97438 * 8 7 5 35 35 H 0.97001 * 120.00432 * 94.99437 * 13 3 2 36 36 H 1.09000 * 110.97128 * 333.70409 * 18 16 14 37 37 H 1.09003 * 110.97089 * 97.42687 * 18 16 14 38 38 H 1.08998 * 110.48178 * 143.47475 * 19 18 16 39 39 H 1.08999 * 110.48851 * 266.12286 * 19 18 16 40 40 H 1.07998 * 120.02868 * 359.97438 * 24 23 22 41 41 H 1.08003 * 119.96192 * 180.34128 * 25 24 23 42 42 H 1.07994 * 119.93018 * 179.69922 * 26 25 24 43 43 H 1.08007 * 119.96011 * 180.02562 * 27 26 25 44 44 H 1.07998 * 120.03632 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1432 0.8785 -1.2279 8 7 3.4062 0.3366 -2.1728 9 14 6.0049 0.8814 -1.3817 10 1 6.5974 0.1474 -0.2348 11 1 6.3977 0.2179 -2.6508 12 1 6.4994 2.2816 -1.3821 13 7 1.6523 2.0975 1.2518 14 6 0.4350 2.6644 1.3669 15 8 -0.3394 2.6327 0.4340 16 6 0.0365 3.3387 2.6544 17 1 0.9018 3.8185 3.1118 18 6 -0.5810 2.3102 3.6276 19 6 -1.6712 3.1539 4.3280 20 6 -1.9902 4.2478 3.3328 21 8 -2.9767 4.9525 3.3676 22 7 -1.0193 4.3270 2.4045 23 6 -1.0165 5.2327 1.3380 24 6 -1.9859 5.1444 0.3474 25 6 -1.9843 6.0442 -0.7005 26 6 -1.0112 7.0241 -0.7709 27 6 -0.0409 7.1108 0.2106 28 6 -0.0406 6.2181 1.2644 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.8292 -0.0612 -2.9497 35 1 2.2718 2.1232 1.9978 36 1 -1.0232 1.4753 3.0839 37 1 0.1605 1.9573 4.3444 38 1 -2.5553 2.5474 4.5246 39 1 -1.2867 3.5811 5.2542 40 1 -2.7430 4.3759 0.3990 41 1 -2.7412 5.9794 -1.4682 42 1 -1.0093 7.7234 -1.5938 43 1 0.7175 7.8776 0.1530 44 1 0.7172 6.2867 2.0308 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181954359.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:06 Heat of formation + Delta-G solvation = -39.025019 kcal Electronic energy + Delta-G solvation = -27311.803954 eV Core-core repulsion = 23615.077550 eV Total energy + Delta-G solvation = -3696.726404 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.13486 -38.83787 -38.44929 -36.28551 -34.97788 -33.14414 -32.39502 -31.07555 -30.77287 -28.96268 -28.41296 -26.68242 -23.39124 -23.00077 -22.67685 -22.12831 -20.56279 -19.57140 -19.42044 -17.85942 -17.31569 -16.57457 -16.08671 -15.65220 -15.38666 -14.98828 -14.80443 -14.57453 -14.30241 -14.09730 -13.51586 -13.43682 -13.27122 -13.03044 -12.91916 -12.72083 -12.49627 -12.30007 -11.72080 -11.53838 -11.43432 -11.29823 -11.24527 -11.07526 -11.04314 -10.86559 -10.38082 -10.24873 -10.00429 -9.70017 -9.48065 -9.12038 -9.02436 -8.75533 -8.54976 -8.21253 -7.89126 -6.17114 -4.27052 1.40061 1.59074 2.48945 2.81068 3.20833 3.22276 3.27769 3.28256 3.87204 3.88206 4.29790 4.31803 4.42822 4.77557 4.86008 5.05170 5.08898 5.14401 5.20570 5.26501 5.38272 5.48234 5.54375 5.63618 5.69110 5.73186 5.82199 6.15116 6.32308 6.38297 6.42255 6.53934 6.58810 6.65109 6.71717 6.95703 7.00771 7.13306 7.19122 7.28813 7.35846 7.55245 7.65750 7.83790 8.12101 8.13354 8.55826 8.70828 9.01286 9.40283 10.88067 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013849 B = 0.004446 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.381219 B = 6295.876233 C = 7238.819280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.273 3.727 4 H 0.049 0.951 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.702 5.702 14 C 0.494 3.506 15 O -0.525 6.525 16 C 0.108 3.892 17 H 0.099 0.901 18 C -0.118 4.118 19 C -0.150 4.150 20 C 0.522 3.478 21 O -0.524 6.524 22 N -0.553 5.553 23 C 0.158 3.842 24 C -0.081 4.081 25 C -0.112 4.112 26 C -0.121 4.121 27 C -0.113 4.113 28 C -0.123 4.123 29 H 0.037 0.963 30 H 0.022 0.978 31 H 0.049 0.951 32 H 0.031 0.969 33 H 0.099 0.901 34 H 0.265 0.735 35 H 0.388 0.612 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.121 0.879 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.804 6.794 10.427 13.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.172 3.828 4 H 0.067 0.933 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.351 5.351 14 C 0.276 3.724 15 O -0.402 6.402 16 C 0.001 3.999 17 H 0.116 0.884 18 C -0.157 4.157 19 C -0.190 4.190 20 C 0.311 3.689 21 O -0.399 6.399 22 N -0.282 5.282 23 C 0.068 3.932 24 C -0.100 4.100 25 C -0.131 4.131 26 C -0.139 4.139 27 C -0.132 4.132 28 C -0.142 4.142 29 H 0.056 0.944 30 H 0.041 0.959 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.117 0.883 34 H 0.075 0.925 35 H 0.220 0.780 36 H 0.109 0.891 37 H 0.120 0.880 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.139 0.861 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.142 0.858 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.868 7.058 9.520 13.697 hybrid contribution 1.522 -0.179 0.139 1.539 sum -5.346 6.879 9.659 13.008 Atomic orbital electron populations 1.21832 0.98377 0.98011 1.01106 1.21938 0.92528 0.99804 1.02334 1.18781 0.94197 0.89091 0.80746 0.93339 1.21166 0.90625 1.39233 1.06356 0.92162 1.24872 0.98566 0.94757 0.95361 1.69878 1.35258 1.37418 1.09325 0.86527 0.84870 0.78324 0.77495 1.20143 1.21123 1.20199 1.46478 1.14096 1.55872 1.18616 1.20173 0.83384 0.80304 0.88516 1.90718 1.51181 1.58771 1.39541 1.21873 0.91659 0.90030 0.96320 0.88353 1.22590 0.98376 0.97222 0.97464 1.22336 1.01347 0.96693 0.98604 1.21004 0.81586 0.84349 0.81966 1.90726 1.27490 1.46727 1.74954 1.45367 1.22993 1.33840 1.26027 1.17282 0.97183 0.90329 0.88377 1.21114 0.98601 0.97955 0.92373 1.21003 0.99051 0.95145 0.97886 1.21135 0.95132 0.98812 0.98833 1.20922 0.98861 0.99090 0.94312 1.21105 0.99056 0.94712 0.99348 0.94436 0.95870 0.93210 0.94990 0.88296 0.92467 0.77973 0.89060 0.88035 0.87495 0.87340 0.86088 0.85840 0.86032 0.85810 0.86151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 8.51 37.15 0.32 -2.55 16 2 C -0.13 -2.93 5.45 -26.73 -0.15 -3.07 16 3 C 0.27 6.47 2.24 -69.08 -0.15 6.31 16 4 H 0.05 1.37 7.58 -51.93 -0.39 0.97 16 5 C -0.54 -13.46 8.73 -34.44 -0.30 -13.76 16 6 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.03 11.29 55.43 0.63 -23.40 16 9 Si 0.90 19.99 29.54 -169.99 -5.02 14.96 16 10 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 11 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 13 N -0.70 -13.11 5.02 -54.93 -0.28 -13.38 16 14 C 0.49 8.79 5.15 -10.98 -0.06 8.74 16 15 O -0.53 -11.32 12.28 5.56 0.07 -11.25 16 16 C 0.11 1.43 3.63 -68.17 -0.25 1.18 16 17 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 18 C -0.12 -1.18 6.67 -25.10 -0.17 -1.35 16 19 C -0.15 -1.46 6.86 -26.74 -0.18 -1.64 16 20 C 0.52 7.71 7.91 -10.79 -0.09 7.63 16 21 O -0.52 -9.53 17.67 5.56 0.10 -9.43 16 22 N -0.55 -8.38 2.65 -106.43 -0.28 -8.66 16 23 C 0.16 2.63 4.12 -83.69 -0.35 2.28 16 24 C -0.08 -1.38 9.14 -39.39 -0.36 -1.74 16 25 C -0.11 -1.66 10.04 -39.61 -0.40 -2.06 16 26 C -0.12 -1.63 10.04 -39.55 -0.40 -2.03 16 27 C -0.11 -1.54 10.04 -39.61 -0.40 -1.94 16 28 C -0.12 -1.83 9.92 -39.39 -0.39 -2.22 16 29 H 0.04 0.75 5.65 -51.93 -0.29 0.45 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 1.15 7.85 -51.93 -0.41 0.74 16 32 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.10 2.57 5.95 -51.93 -0.31 2.26 16 34 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 35 H 0.39 6.12 8.54 -40.82 -0.35 5.77 16 36 H 0.09 1.04 7.91 -51.93 -0.41 0.63 16 37 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.12 2.13 8.06 -52.49 -0.42 1.71 16 41 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 42 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 43 H 0.12 1.35 8.06 -52.48 -0.42 0.92 16 44 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 362.19 15.07 5.46 5.46 Total: -1.00 -32.20 362.19 -9.09 -41.29 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -6.35 Total: 8.97 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -3.41 Total: -4.55 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 0.07 Total: -45.45 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: 0.17 Total: -20.68 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.20 -9.09 -41.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181954359.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.266 kcal (2) G-P(sol) polarization free energy of solvation -32.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds